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* [svn-r13488] Description:Quincey Koziol2007-03-104-19/+4
| | | | | | | | | Remove unused "min. creation order" field from link info object header message. Tested on: FreeBSD/32 6.2 (duty) Mac OS X/32 10.4.8 (amazon)
* [svn-r13487] Description:Quincey Koziol2007-03-101-4/+4
| | | | | | | | | Eliminate message count from new version of object header prefix - it can be computed when the header is loaded and the table of messages is built. Tested on: FreeBSD/32 6.2 (duty)
* [svn-r13486] Description:Quincey Koziol2007-03-102-5/+4
| | | | | | | | | Move attribute tracking information out of object header prefix and make it into a message that is inserted only when attributes are present on the object. Tested on: FreeBSD/32 6.2 (duty)
* [svn-r13477] Description:Quincey Koziol2007-03-085-34/+57
| | | | | | | | | | | | | | | | | | | | The main purpose of this checkin was to eliminate the space used for tracking creation time indices when there is no way they can be used (i.e. attributes can't be shared in the file and the user hasn't turned on attribute creation tracking), however there were some other minor changes which crept in: - Fix a cache locking deadlock when a shared attribute and one of its components end up in the same fractal heap direct block. (This is fixed the "slow" way for right now, until John has time to add support for readers/writer locking to the cache. - Optimize attribute copying when a copy will be kept during a v2 B-tree search. - When freeing a block on disk, attempt to merge it with the metadata and "small data" aggregators. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 6.2 (duty)
* [svn-r13471] Description:Quincey Koziol2007-03-061-4/+4
| | | | | | | | Fix a couple of expected size values that were missed earlier. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13465] Description:Quincey Koziol2007-03-061-2/+87
| | | | | | | | | | | | Fix bug in external links when "strong" file close degree is used. Make external link callbacks use standard error reporting mechanisms. Other minor code cleanups... Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 6.2 (duty)
* [svn-r13458] Adding copying reg_ref attributes to the testPeter Cao2007-03-051-2/+76
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* [svn-r13449] Description:Quincey Koziol2007-03-041-27/+194
| | | | | | | | | | | | | Add object creation property (H5P[s|g]et_obj_track_times) to disable storing timestamps on objects, which makes the object's header size smaller. Also, added object header status flags to H5O_info_t struct (for H5Oget_info/H5Oget_info_by_idx) and cleaned up other field names in the struct as well. Tested on: FreeBSD/32 6.2 (duty) Mac OS X/32 10.4.8 (amazon)
* [svn-r13440] Description:Quincey Koziol2007-03-014-0/+0
| | | | | | | | | | | | | | | | | | | Revise latest form of superblock format pretty drastically, to eliminate unused fields and move rarely used fields into superblock extension. Finished removing last vestiges of references to (never used) i"shared" object header message ID. Added object header messages for non-default v1 B-tree 'K' values and for driver info. Updated testfiles to reflect size changes, etc. Various minor cleanups, etc. Tested on: FreeBSD/32 6.2 (duty) Mac OS X/32 10.4.8 (amazon)
* [svn-r13433] external_link_self test cannot run on VMSElena Pourmal2007-02-281-1/+1
| | | | | | | Commented out for VMS only. Platforms tested: VMS server and kagiso
* [svn-r13432] Changed the detection of alignment requirement for Direct I/O ↵Raymond Lu2007-02-282-7/+1
| | | | | | from configuration to run-time detection in H5FD_direct_open in H5FDdirect.c.
* [svn-r13424] Problem:Elena Pourmal2007-02-271-0/+5
| | | | | | | | | External links test in tsohm.c tries to open a target file the second time. Therefore it fails for VMS. Solution: Commented out this test for VMS system. Platforms tested: VMS server and kagiso
* [svn-r13418] Cleaned up some old paths in config/commence.am and removed ↵James Laird2007-02-271-7/+7
| | | | | | | | some comments in the template file config/Makefile.am.blank. This is just a cleanup checkin. Tested on kagiso.
* [svn-r13388] Added a relative comparison between floating-point values to ↵Raymond Lu2007-02-263-7/+12
| | | | | | avoid compiler's warning of comparing values with "==" or "!=".
* [svn-r13379] Added 'make help' target. This actually runs a script, ↵James Laird2007-02-231-1/+4
| | | | | | | | bin/makehelp (formatting the output in the makefile was pretty hard). Tested that make still works on kagiso; no code changes at all.
* [svn-r13367] Description:Quincey Koziol2007-02-212-9/+289
| | | | | | | | | | Allow "big" attributes to push attribute storage into "dense" form immediately, to accomodate storing the attribute. (This is only allowed in the "latest" version of the format). Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13365] Bug fix.Albert Cheng2007-02-211-26/+0
| | | | | | | | | | | | Description: Multiple copies of Copyright appeared in Makefile.in. This was due to automake copying the copyright right in the included files such as config/commence.am. Solution: Automake treats double hashes as comments and does not copy them to Makefile.in. Changed all the copyright notices in config/*.am to use double hashes for the Copyright right notice. Tested: kagiso via bin/reconfigure.
* [svn-r13361] Description:Quincey Koziol2007-02-211-57/+387
| | | | | | | Add H5Aopen(), H5Aopen_by_idx() and H5Acreate2() routines. Tested on: Mac OS X/32 10.4.8 (amazon)
* [svn-r13360] Description:Quincey Koziol2007-02-212-191/+588
| | | | | | | | | | | | Finish H5Aiterate2() Add H5Arename2() and mark H5Arename as deprecated. Started on H5Oopen_by_idx(). Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 6.2 (duty)
* [svn-r13359] Fixed a bug where the -shlib flag for h5cc would end up on the ↵James Laird2007-02-201-5/+31
| | | | | | | | Dependency line in the Makefile. Makefile change only. Tested on kagiso, to be used to test on cobalt.
* [svn-r13353] Description:Quincey Koziol2007-02-201-24/+605
| | | | | | | | | | | | Checkpoint progress on H5Aiterate2(). Mark H5Aiterate() as deprecated. Various code cleanups. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13347] Description:Quincey Koziol2007-02-201-14/+14
| | | | | | | | | Deprecate H5Adelete in favor of H5Adelete2, which corresponds to the new pattern of specifying an object's location. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13346] Description:Quincey Koziol2007-02-201-0/+99
| | | | | | | | Wrap up attribute "delete by index" tests. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13344] Description:Quincey Koziol2007-02-201-3/+42
| | | | | | | | More progress on attribute deletion by index. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 6.2 (duty)
* [svn-r13342] Bug fix (#717): Nested VL data failed to free the space when ↵Raymond Lu2007-02-201-53/+64
| | | | | | the data is over- written with shorter length.
* [svn-r13341] Description:Quincey Koziol2007-02-201-77/+346
| | | | | | | Checkpoint "delete by index" code, which is partially finished. Tested on: FreeBSD/32 6.2 (duty)
* [svn-r13340] Fixed a bug where shared messages with the same hash values ↵James Laird2007-02-201-1/+1
| | | | | | | | | | could be sorted in the wrong order. This also makes the "unique but shareable" checkin a little easier. Tested on smirom, kagiso, and juniper.
* [svn-r13330] Added HDF5TestExpress functionality to tsohm.c. This may fix ↵James Laird2007-02-191-0/+12
| | | | | | | | | | the bug that sol's been having. When Express Testing (level 2 or 3) is enabled, the test will no longer repeatedly close and re-open a file, which should work better under AFS. Tested on kagiso (extremely minor change, no new code introduced).
* [svn-r13304] Description:Quincey Koziol2007-02-141-23/+23
| | | | | | | | Fix new API routines to use same pattern of arguments for specifying an object as the new H5G/L/O API routines. Tested on: Linux/32 2.6 (chicago)
* [svn-r13287] Description:Quincey Koziol2007-02-133-61/+254
| | | | | | | | | | | | | Add H5Aget_info_by_idx & H5Aget_name_by_idx routines, along with refactoring underlying indices code to handle those sort of queries. Simplify the link callback routines a bit. Minor other cleanups. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 6.2 (duty)
* [svn-r13282] Skip this test if the driver is direct and the express test mode isRaymond Lu2007-02-121-2/+9
| | | | set on because it takes too long on copper.
* [svn-r13278] The test case "complex group hierarchy" takes too long on ↵Raymond Lu2007-02-121-0/+18
| | | | | | | copper when running with direct driver. Skip this test if direct driver is used and the express test mode is set on.
* [svn-r13274] Description:Quincey Koziol2007-02-091-4/+27
| | | | | | | | | Relax restriction on the "location ID" for attribute operations to allow file IDs to be used as the location ID. If a file ID is used, the attribute operations will occur on the file's root group. Tested on: FreeBSD/32 6.2 (duty)
* [svn-r13273] The function test_copy_group_deep takes too long on copper when ↵Raymond Lu2007-02-081-2/+15
| | | | | | | tested with Direct driver. Added the express mode check and driver check to it. Skip it if the express mode is greater than 1 and the driver is "direct."
* [svn-r13272] Description:Quincey Koziol2007-02-081-43/+53
| | | | | | | | Checkpoint attribute creation order coding on "by index" routines. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13270] Description:Quincey Koziol2007-02-081-351/+912
| | | | | | | | | | | Clean up some of the file space allocation formatting. Beef up the attribute creation order tests to make certain they are handling shared atributes correctly (which they apparently are :-) Tested on: FreeBSD/32 6.2 (duty) Mac OS X/32 10.4.8 (amazon)
* [svn-r13267] Description:Quincey Koziol2007-02-081-0/+316
| | | | | | | | | Add more support for creation order index operations to attributes: get deletions & compact<->dense storage transitions working. Tested on: FreeBSD/32 6.2 (duty) Mac OS X/32 10.4.8 (amazon)
* [svn-r13264] Updated Makefile.am with new THG copyright notice.Albert Cheng2007-02-072-4/+6
| | | | Ran reconfigure to generate the Makefile.in files.
* [svn-r13261] Updated copyright notices.Albert Cheng2007-02-071-2/+3
| | | | Tested: visual inspection as they are all just comments.
* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-0793-186/+279
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
* [svn-r13250] Description:Quincey Koziol2007-02-072-4/+173
| | | | | | | | | | Add support for inserting attributes into creation order index. Also, update support for dense link & attribute storage in h5debug. Tested on: FreeBSD/32 6.2 (duty) Mac OS X/32 10.4.8 (amazon)
* [svn-r13248] Description:Quincey Koziol2007-02-062-3/+302
| | | | | | | | | More progress on creation order for attribbutes - they are now basically working for "compact" attribute storage. Tested on: FreeBSD/32 6.2 (duty) Mac OS X/32 10.4.8 (amazon)
* [svn-r13240] Description:Quincey Koziol2007-02-051-61/+5
| | | | | | | | | | More cleanups on the object header message handling code, to make it easier to work with and move forward on the creation order coding. Various other minor cleanups & warning fixes. Tested on: FreeBSD/32 6.2 (duty)
* [svn-r13238] A trial fix for the comparison of equality between ↵Raymond Lu2007-02-052-1/+20
| | | | | | floating-point values in hyperslab.c. A few macros are defined in h5test.h to check if the difference between two values is smaller than Epsilon.
* [svn-r13224] Fixed a bug where messages would report their "raw size" as the ↵James Laird2007-01-301-4/+25
| | | | | | | | | | | | | | size of a shared message rather than the full size of the unshared message, which confused some shared message code. Added a test that should make sure that some messages are too small to be written to the deletion test in tsohm.c. Also added a small optimization so that hash values don't need to be calculated on deletes in list indexes. Tested on Windows, smirom, and kagiso.
* [svn-r13223] Description:Quincey Koziol2007-01-303-27/+21
| | | | | | | | | | | | Move datatype messages into new shared message method interface Clean up various formatting & compiler warnings Minor optimizations Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13219] Description:Quincey Koziol2007-01-291-4/+4
| | | | | | | | | | | Move dataspace messages into new shared header message method calling scheme. Minor other cleanups, etc. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13218] Description:Quincey Koziol2007-01-291-1/+3
| | | | | | | | | Add "old" fill value messages to "new" fill value message sharing (and keep them both in the same shared message index). Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13217] Description:Quincey Koziol2007-01-291-1/+1
| | | | | | | | | | | Move fill value messages into new shared message method calling scheme. Only update an opened dataset's fill value property if it's different from the default fill value settings. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13215] Added a comment.Raymond Lu2007-01-291-0/+3
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