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* Merge pull request #770 in HDFFV/hdf5 from ~NFORTNE2/hdf5_naf:develop to developNeil Fortner2017-11-131-0/+98
|\ | | | | | | | | | | * commit 'bca20b40b4966552a844051c3d912d6aec50592f': Initialize hid_t variables in test_Attr_bug9. Fix HDFFV-10274. When deleting all (or almost all) of the messages in an object header chunk, where the total amount deleted was greater than 64K, an error would occur due to an off by one error in the code that handled that case. Fixed this and added a test case.
| * Initialize hid_t variables in test_Attr_bug9.Neil Fortner2017-11-131-4/+4
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| * Merge branch 'develop' of ↵Neil Fortner2017-11-1015-1717/+2014
| |\ | | | | | | | | | ssh://bitbucket.hdfgroup.org:7999/~nfortne2/hdf5_naf into develop
| * | Fix HDFFV-10274. When deleting all (or almost all) of the messages inNeil Fortner2017-11-101-0/+98
| | | | | | | | | | | | | | | | | | an object header chunk, where the total amount deleted was greater than 64K, an error would occur due to an off by one error in the code that handled that case. Fixed this and added a test case.
* | | Fixed the problems with LDFLAGS and AM_LDFLAGS in filter plugins.Dana Robinson2017-11-131-4/+4
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* | | Merge pull request #767 in HDFFV/hdf5 from ↵Dana Robinson2017-11-111-1/+61
|\ \ \ | |_|/ |/| | | | | | | | | | | | | | ~DEROBINS/hdf5_der:zero_allocation_fix_develop to develop * commit '3e4f6138b60d8363c377e453d63f875775ec907a': Removed asserts from H5MM calls that conflict with stated behavior and added a test to ensure that this doesn't happen in the future.
| * | Removed asserts from H5MM calls that conflict with stated behaviorDana Robinson2017-11-091-1/+61
| |/ | | | | | | and added a test to ensure that this doesn't happen in the future.
* | Cleaned up misc warnings in src and test.Dana Robinson2017-11-101-3/+3
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* | Plugin test reworkDana Robinson2017-11-0914-1714/+2011
|/ | | | Cleanup of plugin test code. Renames many files. Prep for VOL branch merge.
* Merge pull request #705 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2017-10-112-1499/+1382
|\ | | | | | | | | | | | | | | | | | | | | | | * commit '11df540c92ac284a664be912b0cb045e8d92e7d3': Added older change that was added to last change HDFFV-10297 add release note - fix test step HDFFV-10297 Fix resource errors and cleanup whitespace HDFFV-10297 fix vl buffer error HDFFV-10297 update calls to H5Zfilter_avail HDFFV-10297 - code changes nullify error HDFFV-10297 - Fix test errors - five remaining HDFFV-10297 - fix repack individual objects includes H5Zfilter_avail() fix
| * HDFFV-10297 add release note - fix test stepAllen Byrne2017-10-111-0/+2
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| * HDFFV-10297 update calls to H5Zfilter_availAllen Byrne2017-10-091-1499/+1380
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* | Add "-rpath /nowhere" to *_la_LDFLAGS for plugin test libraries. Thislrknox2017-10-091-16/+14
|/ | | | | | allows them to be successfully linked but not installed. The change was added for the HDF5 1.8.20 release, but is also needed for all other HDF5 branches.
* Fix STREQUAL if commands.Allen Byrne2017-10-021-5/+5
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* Better segregate clean & dirty LRU lists so that they are only defined whenQuincey Koziol2017-09-302-4/+7
| | | | the H5C_MAINTAIN_CLEAN_AND_DIRTY_LRU_LISTS macro is defined.
* Style cleanups and misc. bugfixes discovered during full SWMR development.Quincey Koziol2017-09-231-2/+3
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* Modifications based on comments from pull request reviewVailin Choi2017-08-233-4/+39
| | | | | (1) Remove unnecessary asserts (2) Add code to insert bad offset values to the test file in gen_bad_offset.c
* Fix for HDFFV-10216 segfault in H5G_node_cmp3 with corrupt h5 fileVailin Choi2017-08-225-1/+170
| | | | | Fix H5HL_offset_into() to return error when offset exceeds heap data block size. Also fix other places that call this routine to detect error return.
* Minor tweaks in response to code review.Dana Robinson2017-08-011-21/+35
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* Merge branch 'develop' into h5pl_commitDana Robinson2017-08-013-0/+42
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| * Add test header for logAllen Byrne2017-07-261-0/+1
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| * Verify default paths exist in tableAllen Byrne2017-07-261-0/+2
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| * Skip test in test/fheap.c when:Vailin Choi2017-07-181-0/+16
| | | | | | | | | | | | a) multi/split drivers and b) persisting free-space or using paged aggregation strategy because the library will fail file creation (temporary) for the above conditions.
| * Changes made based on RFC review commentsVailin Choi2017-07-181-0/+17
| | | | | | | | Test the changes in a branch via daily testing.
* | Major rework of H5PL package code before bringing VOL changesDana Robinson2017-07-141-156/+270
|/ | | | | | | | over. Brings coding standards in line with the rest of the library, enforces better software engineering principles, and makes everything more maintainable.
* Fix for HDFFV-10217 infinite loop in H5VM_power2up().Vailin Choi2017-07-101-2/+95
| | | | | | The function H5VM_power2up() returns the next power of 2 for n. When n exceeds 2^63, it overflows and becomes 0 causing the infinite looping. The fix ensures that the function checks for n >= 2^63 and returns 0.
* Merge pull request #594 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:test_misc13 to ↵Dana Robinson2017-07-051-142/+140
|\ | | | | | | | | | | | | develop * commit '191147ec90d72619632a24242c003ecb3bccfffd': * Yanked the smoke check that was recently introduced to test the unused H5I_REFERENCE ID type in test_misc19(). This fails when running testhdf5 and skipping the reference test since the H5R package won't be initialized. H5I_REFERENCE will be going away soon and the ID type is unused so there's really no point to doing anything to test it. * Cleaned up test_misc13(), which is a basic test of userblock functionality, to not emit warnings due to the large global array.
| * * Yanked the smoke check that was recently introduced to testDana Robinson2017-07-051-142/+140
| | | | | | | | | | | | | | | | | | | | | | the unused H5I_REFERENCE ID type in test_misc19(). This fails when running testhdf5 and skipping the reference test since the H5R package won't be initialized. H5I_REFERENCE will be going away soon and the ID type is unused so there's really no point to doing anything to test it. * Cleaned up test_misc13(), which is a basic test of userblock functionality, to not emit warnings due to the large global array.
* | Skip HDFFV-10160 filenotclosed test for split/multi driverVailin Choi2017-07-052-1/+20
|/ | | | | | Temporary skip this test for split/multi driver. Further investigation to resolve the failure is needed. Please enter the commit message for your changes. Lines starting
* * Reverted removal of H5I_REFERENCE to avoid breaking binaryDana Robinson2017-07-033-0/+32
| | | | | | compatibility. * Added a quick H5I_REFERENCE smoke check to test_misc19() in tmisc.c.
* Added missing free() call to test_misc19().Dana Robinson2017-07-011-0/+2
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* Purged the unused H5I_REFERENCE from the library.Dana Robinson2017-07-013-5/+0
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* Added a test for VFD IDs to testhdf5.Dana Robinson2017-07-013-14/+156
| | | | | | | This required adding some code to generate a fake VFD class to pass to H5FDregister(). Also, a bunch of whitespace and comment tidying.
* Fix for HDFFV-10160Vailin Choi2017-06-295-5/+193
| | | | Modifications to fix the assertion/abort failure when the application does not close the file.
* Fix for HDFFV-7853 H5Ocopy doesn't work with open identifiersVailin Choi2017-06-111-117/+475
| | | | Changes made so that raw data for dataset objects are copied from cached info when possible instead of flushing objects to file and read them back in again.
* Merge branch 'develop' into windows_openDana Robinson2017-05-3111-24/+327
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| * Fixed typo in vfd.c from 'updated VFD feature flag' checkin.Dana Robinson2017-05-301-1/+1
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| * Added feature flag checks for a few other VFDs in test/vfd.c.Dana Robinson2017-05-261-10/+116
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| * Merge branch 'develop' into compat_feature_flagDana Robinson2017-05-268-13/+29
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| | * More minor warning fixes.Dana Robinson2017-05-252-1/+3
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| | * A few more warnings fixed.Dana Robinson2017-05-251-3/+3
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| | * Fixed additional minor warnings.Dana Robinson2017-05-251-0/+3
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| | * Fixed many minor warnings.Dana Robinson2017-05-255-9/+20
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| * | * Added new public H5FDdriver_query() API call.Dana Robinson2017-05-242-4/+49
| | | | | | | | | | | | | | | | | | * Changed return type of H5FD_driver_query() to herr_t. * Updated swmr.c to use H5FDdriver_query() instead of the private call. * Added some flags tests to vfd.c.
| * | * Made H5FD_driver_query() a private function instead of static.Dana Robinson2017-05-241-6/+30
| | | | | | | | | | | | | | | | | | | | | * Moved H5FD_driver_query() to H5FDint.c. * Minor typo fixes in H5I.c. * Updated swmr.c to check the VFD feature flags and skip the retries test when the VFD is not compatible with H5P_DEFAULT.
| * | Initialized IDs to -1 and minor code tidy.Dana Robinson2017-05-241-6/+6
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| * Call to H5Dopen has H5dopen2 arguments at line 12704 of test/dsets.c -lrknox2017-05-101-1/+1
| | | | | | | | | | changed to H5Dopen2 to fix failure with --with-default-api-version=v16 configure option.
| * Fix for the two issues reported in HDFFV-10051Vailin Choi2017-05-091-13/+6
| | | | | | | | | | Modifications made based on the review comments from pull request #494 Tested on moohan, mayll, kituo, platypus, ostrich, osx1010test, quail, emu.
| * Fix for the two issues reported in HDFFV-10051:Vailin Choi2017-05-071-0/+119
| | | | | | | | | | | | | | | | | | | | | | (1) Repeated open/close of a compact dataset fails due to the increment of ndims in the dataset structure for every open. --This is done only for chunked dataset via H5D__chunk_set_sizes(). (2) layout "dirty" flag for a compact dataset is not reset properly after flushing the data at dataset close. --Reset the "dirty" flag before flushing the message to the object header via H5O_msg_write(). Tested on moohan, kituo, platypus, ostrich, osx1010test, quail, emu.
| * Comment out install-exec-hooks to remove libdynlib* files. Allen didlrknox2017-04-281-2/+2
| | | | | | | | | | | | | | the same for hdf5_1_10 and hdf5_1_10_1 because the hooks don't reliably work. In the develop branch they are causing make install failures because the autotools' install commands sometimes attempt to chmod these files when they no longer exist.
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