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* Updated CMake for the splitting of external.c and vds.c.Songyu Lu2019-04-102-0/+108
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* Minor fixes: updating the test vds_env.c according to the set up of vds.c.Songyu Lu2019-04-101-7/+47
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* Merge branch 'develop' of ↵Songyu Lu2019-04-095-484/+1440
|\ | | | | | | https://bitbucket.hdfgroup.org/scm/~songyulu/hdf5_ray into HDFFV-10658-performance-drop-from-1-8
| * Modifications based on PR feedback:Vailin Choi2019-04-081-0/+194
| | | | | | | | | | (1) Add H5Sdeprec.c to src/CMakeLists.txt (2) Add test for H5Sencode1.
| * HDFFV-10365: Changes as described in the RFC: H5Sencode/H5Sdecode Format Change.Vailin Choi2019-04-065-485/+1247
| | | | | | | | This also addresses HDFFV-10255: H5Sencode/decode performance issue.
* | Left out this file in previous commit.Songyu Lu2019-04-091-11/+10
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* | HDFFV-10658 - setting and getting properties in API context:Songyu Lu2019-04-094-36/+57
| | | | | | | | | | 1. switched to use the existing H5F_prefix_open_t for enum type; 2. put the common private function used by external.c and external_env.c into external_common.c
* | Merge branch 'develop' of ↵Songyu Lu2019-04-087-165/+271
|\ \ | |/ | | | | https://bitbucket.hdfgroup.org/scm/~songyulu/hdf5_ray into HDFFV-10658-performance-drop-from-1-8
| * Fix for HDFFV-10271 hyperslab encoding incorrect length.Vailin Choi2019-04-051-0/+79
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| * Set V112 as the latest format and extend the arrays of version bounds.Vailin Choi2019-04-046-165/+192
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* | Merge branch 'develop' of ↵Songyu Lu2019-04-0417-240/+251
|\ \ | |/ | | | | https://bitbucket.hdfgroup.org/scm/~songyulu/hdf5_ray into HDFFV-10658-performance-drop-from-1-8
| * Merge remote-tracking branch 'origin/develop' into env_vol_loadQuincey Koziol2019-04-0311-65/+177
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| | * Merge pull request #1610 in HDFFV/hdf5 from ↵Binh-Minh Ribler2019-03-242-4/+26
| | |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~BMRIBLER/hdf5_bmr_fixbug:develop to develop * commit 'fe104cc38ffbdb39d3e04da107d86ebfc7e8b622': Test improvement Description Moved the new tests to a more appropriate test function. Platforms tested: Linux/64 (jelly) Fixed HDFFV-10210 and HDFFV-10587 Description: - Added parameter validation (HDFFV-10210) - Added detection of division by zero (HDFFV-10587 - CVE-2018-17438) - Fixed typos in various tests Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1011test)
| | | * Test improvementBinh-Minh Ribler2019-03-211-18/+25
| | | | | | | | | | | | | | | | | | | | | | | | | | | | Description Moved the new tests to a more appropriate test function. Platforms tested: Linux/64 (jelly)
| | | * Merge branch 'develop' of ↵Binh-Minh Ribler2019-03-2023-1550/+1443
| | | |\ | | | | | | | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_fixbug into develop
| | | * | Fixed HDFFV-10210 and HDFFV-10587Binh-Minh Ribler2019-03-202-1/+16
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: - Added parameter validation (HDFFV-10210) - Added detection of division by zero (HDFFV-10587 - CVE-2018-17438) - Fixed typos in various tests Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1011test)
| | * | | Changes that show the right way to iterate over enums.Dana Robinson2019-03-211-6/+10
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| | * | | Used the H5_INC_ENUM macro to squash enum value increment warnings.Dana Robinson2019-03-217-39/+39
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| | * | | Fix CMake error in nameAllen Byrne2019-03-191-2/+2
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| | * | Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Neil Fortner2019-03-151-1/+6
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| | | * | CMake: fix pthread linking to only be privateJerome Soumagne2019-03-131-1/+6
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| | * | | Fix issue with direct chunk write not updating the "last chunk" indexNeil Fortner2019-03-061-20/+101
| | |/ / | | | | | | | | | | | | | | | | cache. Fix issues involving datasets being "no allocated" when they contain cached raw data.
| * | | Specify the default VOL connector to use with an environment variable.Quincey Koziol2019-03-107-175/+74
| |/ / | | | | | | | | | | | | | | | | | | | | | This implicitly adds support for changing the VOL connector for command-line tools or any application linked with the library. Also, add 'make check-vol' support for all directories, clearing up necessary issues in testing scripts, etc.
* | | This commit basically has the following changes:Songyu Lu2019-04-048-430/+792
|/ / | | | | | | | | | | 1. restored the datatype, dataspace, and LCPL of the dataset for VOL connector back to the properties. 2. splitted external.c and vds.c because they called HDsetenv in the program, instead using shell scripts to set the environment variables. 3. changed H5CX_get_vds_prefix and H5CX_get_ext_file_prefix to use H5P_peek instead of H5P_get.
* | Correct varnameAllen Byrne2019-02-261-1/+1
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* | Revise "management" VOL callbacks into 'info' and object 'wrap / retrieval'Quincey Koziol2019-02-231-10/+14
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* | Merge pull request #1569 in HDFFV/hdf5 from ~JSOUMAGNE/hdf5:topic_threadsafe ↵Jerome Soumagne2019-02-221-1/+1
|\ \ | | | | | | | | | | | | | | | | | | to develop * commit 'bcf5c400c06bf06820b25c37eceaa97245f15f1f': Fix CMake H5_HAVE_THREADSAFE to set value in H5pubconf.h
| * | Fix CMake H5_HAVE_THREADSAFE to set value in H5pubconf.hJerome Soumagne2019-02-211-1/+1
| | | | | | | | | | | | | | | | | | Add REQUIRED to find_package(Threads) Link against thread library if static and not WIN32 platform
* | | Merge branch 'develop' into c_stdlib_posix_call_cleanupDana Robinson2019-02-1914-1427/+1295
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| * | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-02-171-366/+0
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '5ad3891d9b861593ebe25d540bed2d913eb83aba': Remove ' ' (typo). Code improvement Removed an extra "using" statement Adding documentation More changes to align with incoming selection improvements. Added C++ wrapper for H5Ovisit2 Adding a C++ wrapper
| | * \ Merge pull request #1548 in HDFFV/hdf5 from merge_hyperslab_updates_04 to ↵Quincey Koziol2019-02-151-366/+0
| | |\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | develop * commit '320eaf91b9adb36bb0fed9264d460e4a808200b7': More changes to align with incoming selection improvements.
| | | * | More changes to align with incoming selection improvements.Quincey Koziol2019-02-141-366/+0
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| * | | | HDFFV-10703 macro vars need quotesAllen Byrne2019-02-153-8/+8
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| * | | | HDFFV-10703 Update CMake commands to latest standardAllen Byrne2019-02-155-98/+98
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| * | | Skip testing of cache_image testAllen Byrne2019-02-143-0/+4
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| * | Merge pull request #1540 in HDFFV/hdf5 from merge_hyperslab_changes_01 to ↵Quincey Koziol2019-02-142-606/+612
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | develop * commit 'fb5d1a37c11bca613175a48262a2147e99c9dede': Align develop with incoming hyperslab_updates branch changes.
| | * | Align develop with incoming hyperslab_updates branch changes.Quincey Koziol2019-02-132-606/+612
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| * | | TRILAB-111 fixes for parallel testingAllen Byrne2019-02-134-242/+399
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| * | Refactor out timeout valuesAllen Byrne2019-02-063-22/+22
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| * Merge branch 'develop' of ↵Binh-Minh Ribler2019-01-261-9/+9
| |\ | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_fixbug into develop
| | * Fixed a bug identified by valgrind in the cork test.Dana Robinson2019-01-251-9/+9
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| * | Added test file for CMakeBinh-Minh Ribler2019-01-261-0/+1
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| * Merge branch 'develop' of ↵Binh-Minh Ribler2019-01-252-4/+11
| |\ | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_fixbug into develop
| | * Merge pull request #1479 in HDFFV/hdf5 from ↵Binh-Minh Ribler2019-01-241-0/+101
| | |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~BMRIBLER/hdf5_bmr_fixbug:develop to develop HDFFV-10586 and HDFFV-10588 * commit '25cd1ab02b9ddaf58a4f5422f4ab4fde411e050a': Added test for HDFFV-10588 Fixed HDFFV-10684 Fixed HDFFV-10586 and HDFFV-10588 Description: HDFFV-10586 CVE-2018-17434 Divide by zero inh5repack_filters Added a check for zero value HDFFV-10588 CVE-2018-17437 Memory leak in H5O_dtype_decode_helper This is actually an Invalid read issue. It was found that the attribute name length in an attribute message was corrupted, which caused the buffer pointer to be advanced too far and later caused an invalid read. Added a check to detect attribute name and its length mismatch. The fix is not perfect, but it'll reduce the chance of this issue when a name length is corrupted or the attribute name is corrupted. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1010test)
| | * | Fixed a memory issue flagged by valgrind in the direct_chunk test.Dana Robinson2019-01-171-2/+2
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| | * | Update usage for FAPLs, and reduce # of groups for smoke checksQuincey Koziol2019-01-161-2/+9
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| * | | Added data file for test and updated MANIFESTBinh-Minh Ribler2019-01-251-0/+0
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| * | Added test for HDFFV-10588Binh-Minh Ribler2019-01-241-0/+101
| |/ | | | | | | | | | | | | Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1010test)
| * Work around compiler fussiness on platypus.Quincey Koziol2019-01-111-13/+39
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| * Delta reduction against hyperslab_updates branch.Quincey Koziol2019-01-111-74/+6
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