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* [svn-r12495] Description:Quincey Koziol2006-07-251-7/+7
| | | | | | | | | | Checkpoint further work on object deletion code for fractal heaps. I believe everything is finally working for this sub-task. More regression tests soon, but I don't foresee any problems. Machines: FreeBSD 4.11 (sleipnir) Linux 2.4 (chicago)
* [svn-r12491] Description:Quincey Koziol2006-07-221-149/+441
| | | | | | | | | | Refactored object deletion code for fractal heap to fix scaling problems. Passing all previous tests again now. Tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (chicago) Mac OS X (amazon)
* [svn-r12474] Quincey Koziol2006-07-155-9/+5
| | | | | | | | Clean up some compiler warnings. Tested on: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r12465] Add regression test to check that the library handles files ↵Quincey Koziol2006-07-143-47/+425
| | | | | | | | with merged object header messages properly. Too minor to require h5committest
* [svn-r12462] Committed a variety of metadata cache related changes:John Mainzer2006-07-134-32/+1966
| | | | | | | | | | | | | | | | | | | | | | 1) Added trace file support to the metadata cache. This allows capture of all metadata cache calls in trace files for purposes of optimization and debuging. 2) Added an expunge entry function. This allows an entry to be deleteded from the cache without writing it to disk even if it is dirty. 3) Added a function call to resize pinned entries. 4) Added code to deal with entries that are dirty on load. This is needed in support of a bug fix which can alter object headers on load to repair files. 5) Added progress reporting code to the "MDC API smoke check" test in cache_api.c. To enable the progress reporting, set report_progress to TRUE in mdc_api_call_smoke_check(). Tested with h5committest, and a parallel test on phoenix (dual athelon linux box).
* [svn-r12461] Cleaned up the names of some internal API functions, cleaned up ↵starfire2006-07-102-13/+13
| | | | | | | | | comments, fixed a few tests that used incorrect names for H5L APIs (formerly hidden behind H5_GROUP_REVISION ifdefs Mostly cosmetic changes, tested on mir.
* [svn-r12455] Purpose:Albert Cheng2006-07-062-16/+24
| | | | | | | | | | | | adjustment Description: These tests (fheap, btree2) are under development and are not used by the library yet. Move them to the end so that their failure do not block other current library code tests. Platforms tested: heping.
* [svn-r12452] Purpose:James Laird2006-07-057-202/+1076
| | | | | | | | | | | | | | | | | | | | | | Feature Description: Revised Link APIs. Solution: New link APIs use H5L* H5*create_expand do not create links to the objects created; this must be done manually with H5Llink. Added APIs to link an object given its ID (H5Llink), to copy links (H5Lcopy), and changed creation APIs (H5Lcreate_hard and H5Lcreate_soft) and query API (H5Lget_linkinfo instead of H5Gget_objinfo). All old APIs are still supported in H5Gdeprec.c . Platforms tested: sol, mir, copper Misc. update: Forgot to update MANIFEST and release docs. Will do after checkin.
* [svn-r12449] Purpose:Quincey Koziol2006-07-011-11/+8
| | | | | | | | | | | | | Code checkpoint Description: Revise fractal heap code to support deletions in up to 2nd level deep indirect blocks. Needs some revisions to support deeper indirect blocks... Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (chicago) h5committest
* [svn-r12443] Purpose:Albert Cheng2006-06-282-34/+40
| | | | | | | | | | | | | | | Added/adjusted Test Express mode. Description: btree2: Added TestExpress mode to skip some long tests (the 5th recursive and the two random tests.) fheap: Changed the express mode messages to be more informative. Un-excluded some tests from express mode. Platforms tested: Red Storm.
* [svn-r12440] Purpose:Quincey Koziol2006-06-2720-493/+493
| | | | | | | | | | | Code cleanup Description: Trim trailing whitespace in Makefile.am and C/C++ source files to make diffing changes easier. Platforms tested: None necessary, whitespace only change
* [svn-r12439] Purpose:Quincey Koziol2006-06-261-73/+177
| | | | | | | | | | | | | New feature Description: Check in Peter's code to add support for "shallow copy", "create intermediate groups", "no attributes" and "expand soft links" support. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (chicago) w/ & w/o group-revision enabled h5committest
* [svn-r12435] Purpose: Bug fixRaymond Lu2006-06-231-3/+15
| | | | | | | | | | | | Description: Mac OS 10.4 on PowerPC chip has some errors to convert (unsigned) long long to long double. When the bit sequences are 0x003ff..., 0x007fff..., 0x00ffff..., 0x01ffff..., 0x7fffff..., the converted values are twice as big as they should be. Solution: Detect the error in configure and disable the compiler conversion and test case. Platforms tested: h5committest, Mac OS 10.4, and fuss.
* [svn-r12432] Purpose:James Laird2006-06-211-4/+4
| | | | | | | | | | | | | | Bug fix Description: Since the new default Express level is 1, some fheap tests were being skipped. Solution: At least temporarily, fheap now skips these tests if it is run at express level 2 or greater. Platforms tested: mir
* [svn-r12431] Purpose:James Laird2006-06-212-17/+7
| | | | | | | | | | | | | | Configuration feature Description: 'make install' now tests both static and shared libraries if both are installed. Solution: Previously, shared libraries were only tested when static libraries were not installed. Also cleaned up line in commence.am that was including HL library in all Makefiles. Platforms tested: mir (Makefile change only)
* [svn-r12430] Purpose:James Laird2006-06-211-17/+36
| | | | | | | | | | | | | | | | testing feature Description: HDF5 Test Express change; now accepts values 0 to 3. Solution: As explained in the RFC and documented in the code, there are now four levels of "express-ness", 0 (no limit) to 3 (1 min limit). It is now up to test writers to take advantage of the various levels to tune their tests' run times. Platforms tested: mir (minor change)
* [svn-r12425] Purpose: Bug fixRaymond Lu2006-06-201-3/+19
| | | | | | | | | | | | | | | Description: Data conversion from long double to (unsigned) long long returns some incorrect values on Mac OS 10.4 and SGI IRIX64 6.5. The conversions start to go wrong when the long double is 20041683600089727.779961 (0x4351ccf385ebc8a0bfcc2a...). If adjusting the values higher by assigning 0x...c8a0cf... or 0x...c8a0df..., the converted values go wild. Solution: Detect this error in configure.in and disable compiler conversions from long double to (unsigned) long long for Mac OS 10.4 and IRIX64 6.5. Platforms tested: h5committest, Mac OS 10.4, and IRIX64 6.5.
* [svn-r12424] Purpose:Quincey Koziol2006-06-191-1322/+3802
| | | | | | | | | | | | | | | | | Code checkpoint Description: Add in more new features for the fractal heap code, mostly bringing in more ability for deleting objects (which isn't completely working yet). Also, checkpoint free space manager code, which is essentially complete (although it needs some more work after the metadata cache has some additional features) Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (chicago) h5committest
* [svn-r12414] Purpose:Quincey Koziol2006-06-171-0/+320
| | | | | | | | | | | | | | | | | Bug fix Description: Fix bug which could lead to files with incorrect count of messages in the header for an object. The exact sequence of operations is complicated and is described in the release notes. Solution: Mark merged null header messages as dirty. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (chicago) Mac OS/X (amazon)
* [svn-r12411] Purpose:James Laird2006-06-131-0/+1
| | | | | | | | | | | | | | Bug fix - bugzilla #552 Description: On Cray X1, trying to use : as an argument confused the system. Solution: Added a test in configure to see if : as an argument is bad. If so, skipped the test. Platforms tested: mir, Cray X1 (change to configure only)
* [svn-r12399] Purpose:Quincey Koziol2006-06-021-0/+4
| | | | | | | | | | Bug fix Description: Disable this file generator unless the group revision flag is enabled. Platforms tested: None, just eyeballed - very minor change
* [svn-r12395] Purpose:Albert Cheng2006-06-012-0/+33
| | | | | | | | | | | | | | Feature Description: Sometimes the parallel prefix is given in the form of nfs:/mnt/pfs which if given to a non-MPIO VFD like the default H5Fcreate, it would fail. Added a new routine h5_rmprefix which would return the non-prefix component part of the file name which would be okay for the default H5Fcreate and such. Platforms tested: Tested in heping parallel.
* [svn-r12386] Purpose:Albert Cheng2006-05-311-27/+42
| | | | | | | | | | | | | | | | | | Added Exress Test mode. Description: The test takes a long time to run. It tempted developers to skip the h5committest. Solution: Added Express Test mode to allow tester an option to run it in express mode (shorter time.) There are already encoded QAK macro which skips many tests. Follow that pattern to skip tests when HDF5TestExpress is set. Platforms tested: Tested in heping, both serial and parallel.
* [svn-r12374] Purpose:John Mainzer2006-05-243-1257/+517
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | 1) Check in potential fix to unreproduceable bug in t_cache observed on Cobalt 2) Check in code supporting added pinned entry features in the metadata cache. Description: 1) Elena encountered a bug in t_cache when running on Cobalt. On investigation I found a potential race condition in t_cache that could explain her observation. 2) Quincey requested additions to the metadata cache allowing renaming of pinned entryies, and marking of pinned or protected entries as dirty. Solution: 1) Modified t_cache.c to prevent the potential race condition. Elena was unable to reproduce the bug on Cobalt, so we don't know if my fix actually addressed the problem. 2) Added code supporting the requested functions. The changes were relatively trivial, but required substantial new test code. Platforms tested: h5committest, serial test on heping, parallel test on phoenix. Misc. update:
* [svn-r12362] Purpose:Quincey Koziol2006-05-221-11/+1046
| | | | | | | | | | | | | | | | | | | | | Code checkpoint Description: Update fractal heap code to allow objects to be deleted Fix bugs in fractal heap object insertion Improve free space manager code to allow sections to be merged and shrink the container Another try at making the Windows compilers happy... Platforms tested: FreeBSD 4.11 (sleipnir) Mac OS X.4/PPC (amazon) Linux 2.4 (chicago & heping) Solaris 2.9 (shanti) AIX 5.? (copper) w/parallel
* [svn-r12358] Purpose:Albert Cheng2006-05-191-1/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug fix. Description: The ${TR}, though avoid the error, is inconvenient. It is needed because configure.in use the char range in the style of 'a-z'. The other style of '[a-z]' is more commonly accepted by all tr but autoconf tends to strip away [], making the syntax rather clumsy. Solution: Learned from autoconf that it avoids the use of character range by just spell all the letters out. Changed our tr commands to use those variables defined by autoconf. Also removed the definition of ${TR} since it will cause inconsistancy when autoconf also use plain 'tr' in its generated code. The Makefile.in are changed because the elimination of ${TR} from configure triggered its removal from all Makefil.in. That is okay because ${TR} is not used at all in Makefile. Platforms tested: h5committested. (sol failed to connected). also tested in shanti using both /usr/ucb/tr and /bin/tr (the bad one before.) Misc. update: Updated both INSTALL and RELEASE files.
* [svn-r12349] Purpose:Quincey Koziol2006-05-151-393/+1847
| | | | | | | | | | | | | | | Code checkpoint Description: Checkpoint fractal heap improvements, as well as move the free space manager code that it's using into a separate package. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4/64 (mir) w/C++ & FORTRAN Linux 2.4/32 (heping) Solaris 2.9 (shanti) AIX 5.? (copper) w/FORTRAN & parallel
* [svn-r12345] Purpose: Codes for backward compatibility.Raymond Lu2006-05-123-4/+5
| | | | | | | | | | Description: Function prototype H5E_walk_t and structure H5E_error_t wasn't backward compatible. Solution: Make them compatible with v1.6 and provide new definitions of H5E_walk_stack_t and H5E_error_stack_t. Platforms tested: fuss and h5committest.
* [svn-r12341] Elena Pourmal2006-05-081-0/+1
| | | | | | | | | | | | | | | | | Purpose: Maintenance Description: dtypes.c compilation failed with gcc 4.1 due to the missing prototype of the opaque_funcs function. Failure was reported by a user who tried to build hdf5-1.8.0-alpha2. I reproduced the failure on sleipnir with gcc41 compiler. Solution: Added prototype definition. Platforms tested: sleipnir with gcc41, heping and copper Misc. update:
* [svn-r12327] Purpose:James Laird2006-05-031-0/+4
| | | | | | | | | | | | | | Bug fix Description: A datatype wasn't being closed in th5s.c Solution: This minor oversight caused an error with my Object Header code. The datatype is now closed in the test. Platforms tested: windows, mir, copper
* [svn-r12322] Purpose: Test some functionsRaymond Lu2006-05-024-5/+733
| | | | | | | | Description: Test some data type functions that are and aren't supposed to work with some data types. Platforms tested: h5committest and fuss.
* [svn-r12321] Purpose:John Mainzer2006-05-021-197/+201
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug fix Description: Fix two test bugs: 1) Unitialized variable bug in test of H5C_get_entry_status() (in test/cache.c) 2) Incorrect initialization of constant in t_cache when running with MPE. (in testpar/t_cache.c) Solution: 1) Don't test uninitialize variable. 2) Correct initialzation of constant in MPE case. Platforms tested: Tested on Heping and Copper. Misc. update:
* [svn-r12317] Purpose:Quincey Koziol2006-04-301-553/+3601
| | | | | | | | | | | | | | | | Code checkpoint Description: More progress on fractal heap, can now re-open an existing heap, although the free space algorithm still needs work. Also, use the new "pinned entry" metadata cache code. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (heping) Solaris 9 (shanti) Linux 2.4/64 (mir)
* [svn-r12316] Purpose:Quincey Koziol2006-04-293-26/+33
| | | | | | | | | | | | | | | Code cleanup/feature twist Description: Adjust recent H5AC routines to take H5F_t pointers instead of H5C_t pointers, to match the rest of the H5AC routines. This change propagated into a few of the tests, which also had some compiler warnings cleaned up... Platforms tested: FreeBSD 4.11 (sleipnir) w/parallel Linux 2.4/64 (mir) w/C++ & FORTRAN
* [svn-r12311] Purpose:John Mainzer2006-04-283-24/+3986
| | | | | | | | | | | | | | | | | | | | | | | | | Add pinned entry capability to cache. Description: For frequently accessed cache entries, the protect/unprotect overhead is sometimes a bottleneck. Solution: Allow entries to be pinned in the cache. Pinned entries can't be evicted, but can be flushed or modified. Platforms tested: h5committested -- minus one small typo in test/cache.c whose fix was tested on copper and heping only. Misc. update:
* [svn-r12295] Purpose:James Laird2006-04-212-4/+6
| | | | | | | | | | | | | | | | | | | Several bug fixes Description: Added config file for Cray X1 (previous file was misnamed) Simplified some code in hyperslab.c test that seemed to have been confusing compiler on Cray X1. Fixed typo in config/commence.am Cleaned up hl/src/Makefile.am Solution: All four fixes should be straightforward. The failure on Cray was very difficult to debug, but involved arithmetic errors. This change seems to fix it. Platforms tested: heping, copper, sol, some Cray X1 (more testing when system comes back up)
* [svn-r12292] Purpose:Quincey Koziol2006-04-201-1/+1
| | | | | | | | | | | | | Code maintenance Description: Remove flexible parallel code Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (heping) Solaris 2.9 (shanti) Linux 2.4/64 (mir)
* [svn-r12286] Purpose: Fix bugBinh-Minh Ribler2006-04-202-3/+3
| | | | | | | | | | | | | | | | | Description: The file size test in C++ library failed on Copper because the value returned by h5_get_file_size was intepreted incorrectly due to different interger sizes. Solution: H5private.h: Added check to use stat64 and off64_t where appropriate. h5test.c and h5test.h: used h5_stat_size_t in place of off_t. tattr.cpp: used h5_stat_size_t in place of off_t. Platforms tested: Linux 2.4 (heping) AIX 5.1 (copper) SunOS 5.8 64-bit (sol) - still on going
* [svn-r12280] Purpose:HDF Admin2006-04-191-1/+4
| | | | | | | | | | | | | | Bug fix. Description: It did not handle the case when version sub-release string is not empty. Solution: Fixed the sed substitution to remove the sub-release string too. Platforms tested: Heping.
* [svn-r12259] Purpose:Quincey Koziol2006-04-151-3/+288
| | | | | | | | | | | | | Code checkpoint Description: Add more regression tests for odd insertion patterns Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (heping) Linux 2.4/64 (mir) Solaris 2.9 (shanti)
* [svn-r12258] Purpose:Quincey Koziol2006-04-151-2649/+2056
| | | | | | | | | | | | | | | | | | | Code checkpoint Description: Add in more fractal heap support for odd allocation patterns (entries that are too large for various block sizes, etc.) Broke out fractal heap code into more source code modules. Refactored fractal heap test to make it more understandable and maintainable for the long term. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (heping) Linux 2.4/64 (mir) Solaris 2.9 (shanti)
* [svn-r12254] Purpose:Quincey Koziol2006-04-148-67/+69
| | | | | | | | | | | | | | Anti-feature Description: Revert changes to H5G_stat_t struct, to make it compatible with the 1.6.x branch again. The information that was added to the H5G_stat_t struct will be reported through other API routines. Platforms tested: FreeBSD 4.11 (sleipnir) w/C++ Linux 2.4/64 (mir) w/C++ & Fortran Solaris 2.9 (shanti)
* [svn-r12229] Purpose:Pedro Vicente Nunes2006-04-122-2/+5
| | | | | | | | | | | | | | | | | | | | | new feature Description: 1) separated the HL library into "public" and "private" header files, with the same caracteristics as the basic library 2) added the public headers to hdf5.h (with a conditional include macro, defined in configure.in) 3) added the path to HL in all Makefile.am 's , because of the inclusion in hdf5.h Solution: Platforms tested: linux 32, 64 AIX solaris with fortran and c++ (one packet table example fails) Misc. update:
* [svn-r12221] Purpose:Quincey Koziol2006-04-108-0/+18
| | | | | | | | | | | | | | | "Hide" file format changes (for now) Description: Add ifdef's (controlled by the --enable-group-revision configure flag) to disable group revision changes to the file format, in order to allow alpha release to go ahead without releasing an unsupported version into the wild. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 32-bit (heping) Linux 2.4 64-bit (mir) Solaris 2.9 (shanti)
* [svn-r12210] Purpose:Albert Cheng2006-04-072-0/+49
| | | | | | | | | | | | feature Description: Added the GetTestExpress and SetTestExpress to support the TestExpress mode according to $HDF5TextExpress. For now, it is just defined or not, the actual value does not matter. Platforms tested: heping(serial), mir (PP).
* [svn-r12209] Purpose:Albert Cheng2006-04-071-32/+49
| | | | | | | | | | | | | | | | Bug fix. Description: getenv_all would fail if one calls it without calling MPI_initialized first. This may happen if one uses PHDF5 library to build a serial nature code and does not make any MPI calls. Solution: Added code to detect if MPI has been initialized. If not, use the original getenv. Platforms tested: heping (serial) and mir (parallel).
* [svn-r12191] Purpose:Quincey Koziol2006-04-021-7/+7
| | | | | | | | | | | | | Bug fix Description: Correct the handling of the group creation property list when copying objects with the "create intermediate groups" flag. Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest (once I pay attention to the compiler warnings... :-)
* [svn-r12190] Purpose:Quincey Koziol2006-04-011-13/+135
| | | | | | | | | | | | Code checkpoint Description: Update fractal heap code to allow skipping direct blocks (that are too small to hold object) when the root indirect block is created. Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r12189] Purpose:Quincey Koziol2006-04-011-114/+1487
| | | | | | | | | | | | | | New/expanded features Description: Check in Peter's changed for the object copy code: - Allow/fix copying datasets using named variable-length datatypes - Start adding framework for property list to control how object copying occurs. Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r12184] Purpose:Quincey Koziol2006-03-311-95/+428
| | | | | | | | | | | | | | | Code checkpoint Description: Checkpoint recent additions to fractal heap code, which allow for better support of objects that don't fit into current direct block, requiring skipped direct blocks to be tracked in free section list. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (chicago & heping) Linux 2.4 (mir) w/64-bit & FORTRAN & C++ Mac OSX (amazon)
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