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* Changes made based on feedback from pull request #1039.Vailin Choi2018-05-1417-254/+257
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* Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Vailin Choi2018-05-144-304/+287
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'dcc66a4f157ace0858b788228550f3e104df3242': (35 commits) GGC requires attribute before function Correct COMPILE defs usage Add missing module_dir property Text cleanup Correct sentence punctuation. Add release note. Use set_property for MT flag Correct command usage Remove APPEND Fix typo Add missing test lib add missing folder to path Fix another command revert Missed a command revert Revert to old style for LINK_FLAGS gen expr not working LINK_FLAGS must be separate property sets Fix link flags syntax Revert refactor link flags refactor link flags to interface Refactor link flags ...
| * Correct COMPILE defs usageAllen Byrne2018-05-091-1/+1
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| * Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2018-04-302-205/+207
| |\ | | | | | | | | | | | | | | | | | | * commit '1f8cb03e11a46f853881f45dac18eff2dd68401e': Fix errors in Makefile.am files that cause "make check" to repeat test, even when there are no changes to source files. (Also add a ggenerated script to the list of files cleaned up on 'make distclean') Further minor cleanups Checkpoint normalization against incoming hyperslab / selection / dataspace improvements.
| | * Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-04-291-1/+1
| | |\ | | | | | | | | | | | | merge_hyperslab_updates
| | | * Fix errors in Makefile.am files that cause "make check" to repeat test, evenQuincey Koziol2018-04-291-1/+1
| | | | | | | | | | | | | | | | | | | | when there are no changes to source files. (Also add a ggenerated script to the list of files cleaned up on 'make distclean')
| | * | Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-04-29213-14725/+20146
| | |\ \ | | | |/ | | | | | | | | merge_hyperslab_updates
| | * | Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2017-04-115-688/+1550
| | |\ \ | | | | | | | | | | | | | | | merge_hyperslab_updates
| | * \ \ Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2017-03-284-8/+125
| | |\ \ \ | | | | | | | | | | | | | | | | | | merge_hyperslab_updates
| | * | | | Checkpoint normalization against incoming hyperslab / selection / dataspaceQuincey Koziol2017-03-281-204/+206
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| * | | | | TRILABS-19 remove add_defintions and use generator expressionsAllen Byrne2018-04-262-99/+80
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* | | | | Fix for HDFFV-10180 Performance issues with H5Oget_info.Vailin Choi2018-04-2423-309/+639
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* | | | TRILABS-20 set a compiler name on all project commandsAllen Byrne2018-04-201-1/+1
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* | | | TRILABS-19 Initial conversion of include_directories to targetsAllen Byrne2018-04-172-6/+23
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* | | | HDFFV-10444 fix soversion numbers for librariesAllen Byrne2018-04-101-4/+4
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* | | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2018-04-093-15/+12
|\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | * commit '3211e907f4f9349ba7510d70cfbcc6ee36d99c58': Remove vestiges of H5_DEBUG_BUILD macro, switching it to the more standard H5CX_DEBUG form. Minor warning cleanup while working on VOL issues.
| * | | | Minor warning cleanup while working on VOL issues.Dana Robinson2018-04-063-15/+12
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* | | | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2018-04-0636-4872/+4395
|\ \ \ \ \ | |/ / / / | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '048ae59d2970dd21810577c999f756c028b6faaf': Correct errors with non-"instrumented library" builds (production & parallel, generally speaking). Update java error stack tests Revert using H5MF_sect_small_can_shrink and H5MF_sect_small_shrink for the file's free space manager (and add a comment about them). Add comment for the file flush when the file low / high bounds are changed after a file is open. Expanded comments abuot H5CX_t fields. Add an assert to verify that we don't write when between MPI_Barrier() calls during a flush. Add comments for internal structs. Remove redundant 'is_collective' parameter from H5CX_set_loc. Correct typo in comment. Revert some tangential code cleanups. Add API context source files to CMake configuration file. Corrections for parallel I/O & tests. Update handling of reporting for breaking collective I/O when the default DXPL is used. Update encoded DXPLs to reflect changes in properties. Correct typo for error checking malloc return value. Refactor H5CX code to reduce duplication. Cleanup API context function usage. Add API context interface and use it throughout the library.
| * | | | Update encoded DXPLs to reflect changes in properties.Quincey Koziol2018-03-208-0/+0
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| * | | | Cleanup API context function usage.Quincey Koziol2018-03-1917-206/+218
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| * | | | Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-03-181-53/+59
| |\ \ \ \ | | | | | | | | | | | | | | | | | | merge_func_enter_vol
| * \ \ \ \ Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-03-1863-4820/+8779
| |\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | merge_func_enter_vol Plus initial steps toward merging API context push into FUNC_ENTER_API* macros
| * | | | | | Add API context interface and use it throughout the library.Quincey Koziol2018-03-1523-4371/+4057
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* | | | | | | Use var instead of absolute numberAllen Byrne2018-04-051-2/+2
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* | | | | | Fix memory leak simply by capturing allocation in varAllen Byrne2018-03-161-53/+59
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* | | | | Merge pull request #931 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to ↵Vailin Choi2018-03-121-0/+128
|\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | develop * commit 'f08b8fa10e7bac5ae26e3b06f938d38ebb3f28e1': Enhancement to the tool h5clear (HDFFV-10360) Fix for HDFFV-10209 VDS SWMR test failure Free the object header when there are chksum retries.
| * | | | | Enhancement to the tool h5clear (HDFFV-10360)Vailin Choi2018-03-121-0/+128
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* | | | | | Merge pull request #935 in HDFFV/hdf5 from ~BMRIBLER/hdf5_bmr:develop to developBinh-Minh Ribler2018-03-121-6/+19
|\ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Notes for gen_bounds.c * commit '8155dba8d7cb8dbe2532c17c7ea5a27f52e3095b': Improve code Description: Added notes and changed argument to H5Fcreate to clarify the latest situation Platforms tested: Linux/64 (jelly)
| * | | | | | Improve codeBinh-Minh Ribler2018-03-101-6/+19
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: Added notes and changed argument to H5Fcreate to clarify the latest situation Platforms tested: Linux/64 (jelly)
* | | | | | | Change CMake min to 3.10Allen Byrne2018-03-091-1/+1
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* | | | | | Improving testsBinh-Minh Ribler2018-03-091-1/+1
|/ / / / / | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: Fixed typos that caused daily test failure on Ostrich Platforms tested: Linux/64 (jelly) Linux/ppc64 (ostrich)
* | | | | Merge pull request #901 in HDFFV/hdf5 from ↵Binh-Minh Ribler2018-03-075-151/+548
|\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~BMRIBLER/version_bounds_bmr:develop to develop tests for version bounds. * commit 'f05f9d4cffab5e008c67e19034c1b248e1b01b3c': Miscellaneous test fixes Description: - dtypes.c: added the use of highest version of nested datatypes to verify the datatype's version. - miscellaneous typos Platforms tested: Linux/64 (jelly) Darwin (osx1010test) Added h5repack tests Description: Added tests SUPERBLOCK and INVALIDBOUNDS, composed by ADB. Platforms tested: Linux/64 (jelly) - cmake Added bounds_latest_latest.h5 Misc improvement Description: - Added test file for h5repack test VERIFY_INVALIDBOUNDS - Updated MANIFEST - Removed unnecessary header file in test - Update h5repack script to copy the new file to the test location Platforms tested: Linux/64 (jelly) Darwin (osx1010test) Improving tests Description: - Added test for version bounds with nested datatypes - Added script for additional version bound test in h5repack - Cleaned up tests for consistency - Removed extra included header files Platforms tested: Linux/64 (jelly) Linux/64 (moohan) Darwin (osx1010test)
| * | | | | Miscellaneous test fixesBinh-Minh Ribler2018-03-062-10/+35
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: - dtypes.c: added the use of highest version of nested datatypes to verify the datatype's version. - miscellaneous typos Platforms tested: Linux/64 (jelly) Darwin (osx1010test)
| * | | | | Misc improvementBinh-Minh Ribler2018-02-281-1/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: - Added test file for h5repack test VERIFY_INVALIDBOUNDS - Updated MANIFEST - Removed unnecessary header file in test - Update h5repack script to copy the new file to the test location Platforms tested: Linux/64 (jelly) Darwin (osx1010test)
| * | | | | Improving testsBinh-Minh Ribler2018-02-174-149/+522
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: - Added test for version bounds with nested datatypes - Added script for additional version bound test in h5repack - Cleaned up tests for consistency - Removed extra included header files Platforms tested: Linux/64 (jelly) Linux/64 (moohan) Darwin (osx1010test)
* | | | | | plist testfiles need to be copied into VFD test folders as wellAllen Byrne2018-03-061-0/+15
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* | | | | | Fix test loopAllen Byrne2018-03-011-39/+39
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* | | | | | Correct if-endif blockAllen Byrne2018-03-011-1/+1
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* | | | | | Correct use of LIST varAllen Byrne2018-02-281-1/+1
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* | | | | | Fix list varAllen Byrne2018-02-273-6/+7
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* | | | | | Fix IN_LIST usageAllen Byrne2018-02-273-4/+4
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* | | | | | Inc CMake min, Add new tests, rework test CMake filesAllen Byrne2018-02-273-571/+535
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* | | | | | Fix for daily test failure for test/fheap.cVailin Choi2018-02-191-0/+27
|/ / / / / | | | | | | | | | | | | | | | | | | | | | | | | | The failure occurs when HDF5TestExpress is set to 0. The check for file size check fails due to persisting free-space when creating the file. The fix is to set libver bounds (v18, latest) when creating the test file.
* | | | | Fixed daily test failureBinh-Minh Ribler2018-02-171-2/+11
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: Added missing H5Pclose that caused daily test failure. Platforms tested: Linux/64 (jelly) Linux/64 (moohan) Darwin (osx1010test)
* | | | | Fix for daily test failureVailin Choi2018-02-141-1/+6
| | | | | | | | | | | | | | | | | | | | Fix for test/testhdf5.sh for configuration with --enable-using-memchecker.
* | | | | Merge pull request #895 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2018-02-1425-2780/+2744
|\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'e09ccc4a2168e79b9f7500b8ec68ed5f829c8604': More includes cleanup Cleanup overuse of include files
| * \ \ \ \ Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2018-02-141-3/+10
| |\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '0b98ddd12324e5dae17dd8135bf72094d66e5d17': Fixed DT failure Description: Added a missing return statement to a non-void function. Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
| * | | | | | More includes cleanupAllen Byrne2018-02-1413-1840/+1823
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| * | | | | | Cleanup overuse of include filesAllen Byrne2018-02-1412-940/+921
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* | | | | | | Merge branch 'develop' of ↵Vailin Choi2018-02-141-3/+10
|\ \ \ \ \ \ \ | | |/ / / / / | |/| | | | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~vchoi/my_hdf5_fork into develop
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