| Commit message (Collapse) | Author | Age | Files | Lines |
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Modify semantics for constant messages slightly, to allow them to be
deleted, but not modified. This works around the issue where "old" style
groups are being created with the symbol table message marked constant in
the 1.6 (and prior) branch, but the 1.8 branch needs to remove the symbol table
message when the group has been changed to the "new" style (upon insertion
of a link that the "old" style can't handle).
Tested on:
Mac OS X/32 10.4.10 (amazon)
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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Fix problem with VL-datatype fill values when shrinking dataset's dimensions
Tested on:
Mac OS X/32 10.4.10 (amazon)
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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HDF5_DRIVER value to activate the use of latest_format for file access
property list.
Platform tested: h5committested.
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"Genericize" the datatypes for fill value testing when extending a dataset.
Tested on:
Mac OS X/32 10.4.10 (amazon)
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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A few more cleanups for testing [atomic] fill values and extending datasets
Tested on:
Mac OS X/32 10.4.10 (amazon)
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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Extract main test for extending a dataset into separate routine, to
facilitate testing different parameters.
Tested on:
Mac OS X/32 10.4.10 (amazon)
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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src/H5pubconf.h file.
2) Removing configuration of c++/src/H5cxx_pubconf.h file.
Reasoning: the additional pubconf file caused compilation complications, this is cleaner.
Tested: kagiso, smirom
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Description: added new configuration to generate a pubconf file
in the c++/src directory, H5cxx_pubconf.h. When C++
compiler recognizes 'offsetof', the macro
H5_CXX_HAVE_OFFSETOF is defined in the new
pubconf file.
tested: kagiso, smirom
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Uncomment some additional tests, which are [now?] working.
Tested on:
Mac OS X/32 10.4.10 (amazon)
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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Code & warning cleanups
Tested on:
Mac OS X/32 10.4.10 (amazon)
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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Clean up files generated during testing.
Tested on:
Linux/32 2.6 (chicago)
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Add some additional tests for reading non-contiguous selections from
datasets which haven't had any data written to them (both non-VL and VL
datatype fill values covered)
Tested on:
Mac OS X/32 10.4.9 (amazon)
FreeBSD/32 6.2 (duty)
FreeBSD/64 6.2 (liberty)
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company. The I/O is optimized when the source and destination
members are a subset of each other one way or another, and
the order is the same, and no conversion is needed. For example:
struct source { struct destination {
TYPE1 A; --> TYPE1 A;
TYPE2 B; --> TYPE2 B;
TYPE3 C; --> TYPE3 C;
}; TYPE4 D;
TYPE5 E;
};
or
struct destination { struct source {
TYPE1 A; --> TYPE1 A;
TYPE2 B; --> TYPE2 B;
TYPE3 C; --> TYPE3 C;
}; TYPE4 D;
TYPE5 E;
};
The optimization is simply moving data from the source to the
appropriate places in the buffer and bypass the reading of
the background data and data conversion.
Tested on smirom, liberty, sol, and copper.
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Fixed bugs w/VL-datatype fill values for chunked dataset storage.
Tested on:
Mac OS X/32 10.4.9 (amazon)
FreeBSD/32 6.2 (duty)
FreeBSD/64 6.2 (liberty)
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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Bug fix.
Description:
Test test_misc25b() open an existing test data file with RDWR unnecessarily.
(This was discovered during read-only test.)
Changed file open mode to RDONLY.
Tested platform:
Kagiso (readonly) only since it is a trivial change.
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Fix problems with 'check-vfd' target, that were [mostly] introduced with
the recent "unique, but sharable" ISOHM optimization.
The problems were mostly with using the 'core' VFD, so the
H5Pset_fapl_core() API call was changed to re-open existing files (therefore
operating more list the sec2, stdio, etc. VFDs). This allows many more of
the tests to run using the 'core' VFD, so those were enabled also.
Tested on:
Linux/64 2.6 (chicago2) w/check-vfd
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Fix writing variable-length datatype fill values for contiguous dataset
storage
Tested on:
Mac OS X/32 10.4.9 (amazon)
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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It's output file from big.c.
Tested on smirom because it's a simple change.
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DEFAULT_VFD).
Description: Changes made during this checkin need to be greatly
modified, so I'm removing them now rather than leaving them
in and fixing them later.
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Fix compact dataset storage to initialize VL datatype fill values
correctly.
Also, fix bug in global heap code when the fix action on a global
heap is to delete an object in a heap with no free space.
Tested on:
Mac OS X/32 10.4.9 (amazon)
FreeBSD/32 6.2 (duty)
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test/Makefile.
Description: a new configure flag has been created that will now set a macro
in the test/Makefile. The flag is with-default-vfd=. When set to
a virtual file driver (e.g. "--with-default-vfd=sec2"), the macro
DEFAULT_VFD will hold this value.
Tested: kagiso, smirom, linew
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Minor code cleanups
Tested on:
Mac OS X/32 10.4.9 (amazon)
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fro the Chicago company.
Tested on smirom and liberty because it's relatively simple.
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respectively.
Tested on smirom because it's simple change.
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doesn't return correct
file size from MPI_File_get_size. Bypass this problem by replacing it with
stat. Add an option --disable-mpi-size in configure to indicate this function
doesn't work properly. Add a test in testpar/t_mpi.c, too. If it returns wrong
file size, print out a warning.
Tested on kagiso (parallel) because already tested the same change to v1.6 on
several platforms (kagiso, cobalt, copper, and sol).
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Incremental step forward in fixing problems with fill values that have
a variable-length daattype. This set of changes fixes problems with the copying
the property list values.
tested Tn:
Mac OS X/32 10.4.9 (amazon)
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1) Back out last check in (forget to include the memory leak fix in compare_datasets())
2) Break the infinite loop when the ref_object points to itself at compare_data()
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Regenerate configuration files after latest checkin
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Fix possible file corruption when using "new" format object headers and the
size of chunk #0 for an object header transitions between needing 1->2->4->8-
byte encoding for the size and there are "clean" messages in the object header
already. (Usually triggered by flushing the file while adding attributes to
an object)
Tested on:
Mac OS X/32 10.4.9 (amazon)
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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Fix error which attempted to allocate space for attribute that has a
'null' dataspace.
Tested on:
Mac OS X/32 10.4.9 (amazon)
FreeBSD/32 6.2 (duty)
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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Clean up compiler warnings
Tested on:
Mac OS X/32 10.4.9 (amazon)
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Clean up ISOHM code further and get rid of several non-optimal ways
of working with object headers.
Tested on:
FreeBSD/32 6.2 (duty)
Mac OS X/32 10.4.9 (amazon)
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Clean temporary test files
Tested: linux, SunOS
Note: the files outside tools were generated by bin/reconfigure
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WIN32, so I've standardized all #ifdef's to use _WIN32. This should not affect any other platform.
Tested:
Visual Studio (32- and 64-bit) on Win XP
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Check in "unique, but sharable" optimization to ISOHM code, which
allows object header messages that are only used in one object to remain in
the sole user's header, but migrates messages that are used in more than one
header into the ISOHM heap.
Tested on:
Mac OS X/32 10.4.9 (amazon)
FreeBSD/32 6.2 (duty)
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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issue with Visual Studio. I've also turned this project on by default in Windows.
Tested:
VS6 on WinXP
kagiso
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Various minor cleanups found while working on the "unique, but sharable"
ISOHM changes.
Tested on:
Mac OS X/32 10.4.9 (amazon)
FreeBSD/32 6.2 (duty)
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Take further advantage of the readers/writer locking in the metadata cache
and push the locking of the local heap up to the routines which call B-tree
routines, which should drastically lower the number of metadata cache protect/
unprotect calls.
Tested on:
Mac OS X/32 10.4.9 (amazon)
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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Minor formatting & warning reduction code cleanups
Tested on:
Mac OS X/32 10.4.9 (amazon)
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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Add "fail if unknown" and "mark if unknown" flags to object header messages.
This gives the library a clean way to tell older libraries that a message should
not be just ignored if it's unknown, but that other actions should occur.
Tested on:
Mac OS X/32 10.4.9 (amazon)
FreeBSD/32 6.2 (duty)
FreeBSD/64 6.2 (liberty)
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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H5Premove(dcpl, H5D_CRT_EXT_FILE_LIST_NAME) causes memory leak.
Use new function H5P_reset_external_file_test(dcpl) instead.
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dereferenced object, they do not expect the name length to count the null terminator.
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Basic problem
was a failure to clean up properly after a test.
I reproduced the failure on Phoenix before fixing it. As the error
was relatively straight forward, I tested fix on Phoenix only.
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if available, to support big
files. 2. added a check in test/big.c to make sure the system supports big file.
Tested on smirom because already tested the same changes for v1.6 on liberty, smirom,
copper, and sol.
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Comment out cache test until John can take a look at it.
Tested on:
FreeBSD/32 6.2 (duty)
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Fully enable readers/writer locking in metadata cache and correct errors
in cache clients which were modifying a cache entry while only holding a
read lock on it.
Tested on:
Mac OS X/32 10.4.9 (amazon)
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
FreeBSD/32 6.2 (duty)
FreeBSD/64 6.2 (liberty)
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Clean up problems from error handling API changes in parallel and
threadsafe builds.
Tested on:
FreeBSD/64 6.2 (liberty) w/parallel & threadsafe
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Rename new error handling API routines from H5E<foo>_stack() to
H5E<foo>2().
Tested on:
Mac OS X/32 10.4.9 (amazon)
FreeBSD/32 6.2 (duty)
FreeBSD/64 6.2 (liberty)
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