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* [svn-r13365] Bug fix.Albert Cheng2007-02-211-26/+0
| | | | | | | | | | | | Description: Multiple copies of Copyright appeared in Makefile.in. This was due to automake copying the copyright right in the included files such as config/commence.am. Solution: Automake treats double hashes as comments and does not copy them to Makefile.in. Changed all the copyright notices in config/*.am to use double hashes for the Copyright right notice. Tested: kagiso via bin/reconfigure.
* [svn-r13361] Description:Quincey Koziol2007-02-211-57/+387
| | | | | | | Add H5Aopen(), H5Aopen_by_idx() and H5Acreate2() routines. Tested on: Mac OS X/32 10.4.8 (amazon)
* [svn-r13360] Description:Quincey Koziol2007-02-212-191/+588
| | | | | | | | | | | | Finish H5Aiterate2() Add H5Arename2() and mark H5Arename as deprecated. Started on H5Oopen_by_idx(). Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 6.2 (duty)
* [svn-r13359] Fixed a bug where the -shlib flag for h5cc would end up on the ↵James Laird2007-02-201-5/+31
| | | | | | | | Dependency line in the Makefile. Makefile change only. Tested on kagiso, to be used to test on cobalt.
* [svn-r13353] Description:Quincey Koziol2007-02-201-24/+605
| | | | | | | | | | | | Checkpoint progress on H5Aiterate2(). Mark H5Aiterate() as deprecated. Various code cleanups. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13347] Description:Quincey Koziol2007-02-201-14/+14
| | | | | | | | | Deprecate H5Adelete in favor of H5Adelete2, which corresponds to the new pattern of specifying an object's location. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13346] Description:Quincey Koziol2007-02-201-0/+99
| | | | | | | | Wrap up attribute "delete by index" tests. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13344] Description:Quincey Koziol2007-02-201-3/+42
| | | | | | | | More progress on attribute deletion by index. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 6.2 (duty)
* [svn-r13342] Bug fix (#717): Nested VL data failed to free the space when ↵Raymond Lu2007-02-201-53/+64
| | | | | | the data is over- written with shorter length.
* [svn-r13341] Description:Quincey Koziol2007-02-201-77/+346
| | | | | | | Checkpoint "delete by index" code, which is partially finished. Tested on: FreeBSD/32 6.2 (duty)
* [svn-r13340] Fixed a bug where shared messages with the same hash values ↵James Laird2007-02-201-1/+1
| | | | | | | | | | could be sorted in the wrong order. This also makes the "unique but shareable" checkin a little easier. Tested on smirom, kagiso, and juniper.
* [svn-r13330] Added HDF5TestExpress functionality to tsohm.c. This may fix ↵James Laird2007-02-191-0/+12
| | | | | | | | | | the bug that sol's been having. When Express Testing (level 2 or 3) is enabled, the test will no longer repeatedly close and re-open a file, which should work better under AFS. Tested on kagiso (extremely minor change, no new code introduced).
* [svn-r13304] Description:Quincey Koziol2007-02-141-23/+23
| | | | | | | | Fix new API routines to use same pattern of arguments for specifying an object as the new H5G/L/O API routines. Tested on: Linux/32 2.6 (chicago)
* [svn-r13287] Description:Quincey Koziol2007-02-133-61/+254
| | | | | | | | | | | | | Add H5Aget_info_by_idx & H5Aget_name_by_idx routines, along with refactoring underlying indices code to handle those sort of queries. Simplify the link callback routines a bit. Minor other cleanups. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 6.2 (duty)
* [svn-r13282] Skip this test if the driver is direct and the express test mode isRaymond Lu2007-02-121-2/+9
| | | | set on because it takes too long on copper.
* [svn-r13278] The test case "complex group hierarchy" takes too long on ↵Raymond Lu2007-02-121-0/+18
| | | | | | | copper when running with direct driver. Skip this test if direct driver is used and the express test mode is set on.
* [svn-r13274] Description:Quincey Koziol2007-02-091-4/+27
| | | | | | | | | Relax restriction on the "location ID" for attribute operations to allow file IDs to be used as the location ID. If a file ID is used, the attribute operations will occur on the file's root group. Tested on: FreeBSD/32 6.2 (duty)
* [svn-r13273] The function test_copy_group_deep takes too long on copper when ↵Raymond Lu2007-02-081-2/+15
| | | | | | | tested with Direct driver. Added the express mode check and driver check to it. Skip it if the express mode is greater than 1 and the driver is "direct."
* [svn-r13272] Description:Quincey Koziol2007-02-081-43/+53
| | | | | | | | Checkpoint attribute creation order coding on "by index" routines. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13270] Description:Quincey Koziol2007-02-081-351/+912
| | | | | | | | | | | Clean up some of the file space allocation formatting. Beef up the attribute creation order tests to make certain they are handling shared atributes correctly (which they apparently are :-) Tested on: FreeBSD/32 6.2 (duty) Mac OS X/32 10.4.8 (amazon)
* [svn-r13267] Description:Quincey Koziol2007-02-081-0/+316
| | | | | | | | | Add more support for creation order index operations to attributes: get deletions & compact<->dense storage transitions working. Tested on: FreeBSD/32 6.2 (duty) Mac OS X/32 10.4.8 (amazon)
* [svn-r13264] Updated Makefile.am with new THG copyright notice.Albert Cheng2007-02-072-4/+6
| | | | Ran reconfigure to generate the Makefile.in files.
* [svn-r13261] Updated copyright notices.Albert Cheng2007-02-071-2/+3
| | | | Tested: visual inspection as they are all just comments.
* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-0793-186/+279
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
* [svn-r13250] Description:Quincey Koziol2007-02-072-4/+173
| | | | | | | | | | Add support for inserting attributes into creation order index. Also, update support for dense link & attribute storage in h5debug. Tested on: FreeBSD/32 6.2 (duty) Mac OS X/32 10.4.8 (amazon)
* [svn-r13248] Description:Quincey Koziol2007-02-062-3/+302
| | | | | | | | | More progress on creation order for attribbutes - they are now basically working for "compact" attribute storage. Tested on: FreeBSD/32 6.2 (duty) Mac OS X/32 10.4.8 (amazon)
* [svn-r13240] Description:Quincey Koziol2007-02-051-61/+5
| | | | | | | | | | More cleanups on the object header message handling code, to make it easier to work with and move forward on the creation order coding. Various other minor cleanups & warning fixes. Tested on: FreeBSD/32 6.2 (duty)
* [svn-r13238] A trial fix for the comparison of equality between ↵Raymond Lu2007-02-052-1/+20
| | | | | | floating-point values in hyperslab.c. A few macros are defined in h5test.h to check if the difference between two values is smaller than Epsilon.
* [svn-r13224] Fixed a bug where messages would report their "raw size" as the ↵James Laird2007-01-301-4/+25
| | | | | | | | | | | | | | size of a shared message rather than the full size of the unshared message, which confused some shared message code. Added a test that should make sure that some messages are too small to be written to the deletion test in tsohm.c. Also added a small optimization so that hash values don't need to be calculated on deletes in list indexes. Tested on Windows, smirom, and kagiso.
* [svn-r13223] Description:Quincey Koziol2007-01-303-27/+21
| | | | | | | | | | | | Move datatype messages into new shared message method interface Clean up various formatting & compiler warnings Minor optimizations Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13219] Description:Quincey Koziol2007-01-291-4/+4
| | | | | | | | | | | Move dataspace messages into new shared header message method calling scheme. Minor other cleanups, etc. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13218] Description:Quincey Koziol2007-01-291-1/+3
| | | | | | | | | Add "old" fill value messages to "new" fill value message sharing (and keep them both in the same shared message index). Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13217] Description:Quincey Koziol2007-01-291-1/+1
| | | | | | | | | | | Move fill value messages into new shared message method calling scheme. Only update an opened dataset's fill value property if it's different from the default fill value settings. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13215] Added a comment.Raymond Lu2007-01-291-0/+3
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* [svn-r13207] Added a debug function to dump file sizes during one of the ↵James Laird2007-01-261-1/+27
| | | | | | | | tsohm.c tests. Also cleaned up a warning. Tested on kagiso; changes should only affect debugging.
* [svn-r13181] Added a configure check to prevent a failure on Cygwin.James Laird2007-01-231-1/+1
| | | | | | | | | | | | | | It seems that while Cygwin supports the time command, it has trouble with the syntax srcdir="../../hdf5/test" time ./testhdf5 and complains. The solution is to test the above case in configure and not to use the time command if it fails; Cygwin is fine with srcdir="../../hdf5/test" ./testhdf5 Tested on Cygwin and kagiso. This feature shouldn't be a major compatibility problem since every platform but Cygwin is already fine with the current syntax.
* [svn-r13180] Comment out the whole test when MULTI driver is used. It ↵Raymond Lu2007-01-231-1/+1
| | | | caused some problem on copper. Will enter a bug report for it and leave it for future debugging.
* [svn-r13167] Description:Quincey Koziol2007-01-221-1/+1
| | | | | | | | | | | Get rid of two different types of fill value struct (merge H5O_fill_t and H5O_fill_new_t) and clean up & simplify dataset initialization code. (In preparation for shared object header message method call refactoring). Tested on: FreeBSD/32 6.2 (duty) Mac OS X/32 10.4.8 (amazon)
* [svn-r13166] Fixed bug in H5Ocopy where shared attributes that were deleted ↵James Laird2007-01-221-0/+1
| | | | | | | | | | | during H5Ocopy would become shared NULL messages (oops!). Added a test for this case. Also fixed the #define that caused errors on Windows (and probably other platforms). This may fix the Daily Test error. Tested on Windows, smirom, kagiso, and juniper.
* [svn-r13155] Description:Quincey Koziol2007-01-191-5/+5
| | | | | | | | | | | | | | Add "set_crt_index" and "get_crt_index" methods for the object header message class. Unify fractal heap definitions for shared messages and attributes, under "object header" fractal heap definitions. Initial code for adding creation order index to object header messages. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13152] Description:Quincey Koziol2007-01-181-61/+118
| | | | | | | | | | | Add anotherdense/shared attribute test. Clean up minor attribute/object header codelets, in preparation for adding creation index to attributes. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 6.2 (duty)
* [svn-r13151] Description:Quincey Koziol2007-01-174-90/+89
| | | | | | | | Clean up compiler warnings, esp. on Windows Tested on: FreeBSD/32 6.2 (duty) Mac OS X/32 10.4.8 (amazon)
* [svn-r13149] Added tests to verify that H5Sselect_valid() returns FAIL when ↵Christian Chilan2007-01-171-3/+23
| | | | dataspace is not valid, or when dataspace is valid but closed.
* [svn-r13148] Added a test to verify that current dataspace dimensions cannot ↵Christian Chilan2007-01-171-0/+15
| | | | be H5S_UNLIMITED.
* [svn-r13145] Fixing warning message.Peter Cao2007-01-171-26/+2
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* [svn-r13144] Added a test case for VL type of compound type with VL string ↵Raymond Lu2007-01-161-0/+287
| | | | in the field.
* [svn-r13143] Refactoring.James Laird2007-01-161-31/+118
| | | | | | | | | | | | | | Added can_share callback for OH messages. This determines whether the message is allowed to be shared in the heap (committed and immutable datatypes can't be). Fixed a bug in the dense attribute storage that tried to open the shared message heap when it hadn't been created yet. Made the test to extend shared dataspace messages a bit more robust. Refactored the code the searches a shared message list index to be a little more efficient. A few other minor changes. Tested on smirom, kagiso, Windows, and juniper.
* [svn-r13139] Fixed the MULTI problem (Bug #731) that corrupted the data. ↵Raymond Lu2007-01-122-7/+56
| | | | | | | The problem came from the EOA for the whole MULTI file. It's taken out because it's meaningless for MULTI file. Instead, each individual file has its EOA.
* [svn-r13135] Continuing code cleanup.James Laird2007-01-111-1/+167
| | | | | | | | | Moved SOHM table version out of table encoding and completely into superblock. This is a file format change. Added test that extends shared dataspaces. Dynamically allocate arrays in shared message cache code. Clean up comments. Tested on windows, kagiso, smirom.
* [svn-r13130] Description:Quincey Koziol2007-01-101-62/+142
| | | | | | | | | Further tests & bugfixes for shared/committed components of shared/un- shared attributes using dense/compact storage. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 6.1 (duty)
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