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* [svn-r26482] Opening source files now reuses the flags from the virtual file.Neil Fortner2015-03-191-5/+24
| | | | | | | | | Added tests for I/O on virtual dataset with source datasets in unopened files. Note there are still some code coverage assertions in the selection matching algorithm - if you hit these try taking them out. Note make check still fails in h5dump test (unrelated to this checkin). Tested: ummon
* [svn-r26469] INCOMPLETE, UNWORKING CODENeil Fortner2015-03-171-0/+155
| | | | Commit progress through 3/17/15
* [svn-r26421] This is Neils' change exposed when I ran bin/reconfigure for ↵Elena Pourmal2015-03-101-1/+1
| | | | examples.
* [svn-r26411] Add support for I/O in very simple cases (virtual mapping and ↵Neil Fortner2015-03-092-2/+215
| | | | | | | | | file space are both H5S_ALL). Note make check fails in h5dump test (unrelated to this checkin). Tested: ummon
* [svn-r26346] Add more test cases, refactor test code to reduce code ↵Neil Fortner2015-03-031-103/+615
| | | | | | | | | duplication. Minor fixes in src. Note make check still fails in h5ls test. Tested: ummon
* [svn-r26306] Merge r26296 through 26304 from trunk to vds branch.Neil Fortner2015-02-253-3/+259
|\ | | | | | | | | | | | | It should no longer be necessary to use --enable-using-memchecker make check fails due to an issue with h5ls apparently unrelated to the merge Tested: ummon
| * [svn-r26303] remove files with .clog2 extension generated by MPE when doing ↵Mohamad Chaarawi2015-02-251-3/+3
| | | | | | | | make clean.
| * [svn-r26301] Description:Quincey Koziol2015-02-251-0/+92
| | | | | | | | | | | | | | | | Bring Neil's fix for error in H5S_extent_copy() back to the trunk. Tested on: Mac OSX/64 10.10.2 (amazon) w/serial (h5committest forthcoming)
| * [svn-r26300] Description:Quincey Koziol2015-02-251-0/+164
| | | | | | | | | | | | | | | | | | Add H5Sis_regular_hyperslab() and H5Sget_regular_hyperslab() API routines, along with tests. Tested on: Mac OSX/64 10.10.2 (amazon) w/serial (h5committest forthcoming)
* | [svn-r26296] Merge r26050 through 26295 from trunk to vds branch.Neil Fortner2015-02-243-5/+3
|\ \ | |/ | | | | Tested: ummon
| * [svn-r26225] Removes broken open() call work-around that was specific to the nowDana Robinson2015-02-191-2/+0
| | | | | | | | | | | | | | | | | | | | unsupported Code Warrior compiler. Also removes the H5_NO_SHARED_WRITING symbol from the pubconf file. Fixes: HDFFV-9080 Tested on: jam only, after bin/reconfigure (all platforms should see no source changes)
| * [svn-r26208] Update cmake minimumsAllen Byrne2015-02-181-1/+1
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| * [svn-r26188] Merged autotools fixes into the trunk:Scot Breitenfeld2015-02-161-1/+2
| | | | | | | | HDFFV-9089, HDFFV-9091, HDFFV-9092, HDFFV-9094, HDFFV-9095
| * [svn-r26180] merge configure fixes for HDFFV-9068,9069,9096,9097,9135 from ↵Mohamad Chaarawi2015-02-161-1/+0
| | | | | | | | | | | | | | | | | | | | | | | | autotools_rework branch: - Remove Infering parallel compilers (C and Fortran) from configure.ac - Remove restriction to build shared with parallel - Cleanup parallel sections in configure.ac - remove large file support checks - MPE fixes. tested with h5committest.
| * [svn-r26106] Disable flush1/flush2 test under debug VFD on Windows.Allen Byrne2015-02-021-12/+77
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| * [svn-r26074] fix test destinationAllen Byrne2015-01-291-2/+2
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* | [svn-r26293] Implement patching of virtual dataspace extent in mapping ↵Neil Fortner2015-02-241-16/+21
| | | | | | | | | | | | | | | | dataspaces when opening virtual dataset. Add tests for this. Tested: ummon
* | [svn-r26283] Correct test folder handling (merge from trunk)Allen Byrne2015-02-231-14/+79
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* | [svn-r26282] Update source file list and test listAllen Byrne2015-02-232-0/+2
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* | [svn-r26268] Added VDS example.Elena Pourmal2015-02-221-1/+1
| | | | | | | | | | | | | | I ran bin/reconfigure on jam and it modified test/Makefile.in. May be Neil fixed Makefile.am, but didn't run reconfigure? Tested on jam.
* | [svn-r26261] Commit working but incomplete prototype. Does not perform I/O.Neil Fortner2015-02-202-29/+299
| | | | | | | | Tested: ummon
* | [svn-r26199] INCOMPLETE, UNWORKING CODENeil Fortner2015-02-171-226/+0
| | | | | | | | Fix doubled vds.c
* | [svn-r26198] INCOMPLETE, UNWORKING CODENeil Fortner2015-02-173-9/+478
|/ | | | Commit progress through 1610 CST 2/17/15
* [svn-r26036] HDFFV-8736: Patch H5PL.c and test for cygwin plugin support.Allen Byrne2015-01-261-2/+10
| | | | Tested: local linux and cygwin
* [svn-r25994] revert adding the has_mpi_atomicity feature flag and use the ↵Mohamad Chaarawi2015-01-211-1/+2
| | | | | | has_mpi flag instead.
* [svn-r25990] Add VFD flush2 depends on flush1 property to testAllen Byrne2015-01-211-0/+1
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* [svn-r25986] HDFFV-9060: Changed test folder to use different test folders ↵Allen Byrne2015-01-201-46/+180
| | | | | | for VFDs and regular. Needed to set srcdir env var and specify working folder to the folders where all the reference files were copied. Tested: local linux
* [svn-r25984] change the message flag H5O_MSG_FLAG_FAIL_IF_UNKNOWN toMohamad Chaarawi2015-01-203-9/+26
| | | | | | | | H5O_MSG_FLAG_FAIL_IF_UNKNOWN_AND_OPEN_FOR_WRITE. Will add a new H5O_MSG_FLAG_FAIL_IF_UNKNOWN_ALWAYS with the new avoid_truncate patch coming later. tested h5committest
* [svn-r25953] Comment out printf statement as it caused system resource ↵Allen Byrne2015-01-051-3/+5
| | | | | | issues on Windows. Test now executes in 1/10 of time. Tested: local linux and Windows
* [svn-r25766] Description:Quincey Koziol2014-11-031-1526/+301
| | | | | | | | | | Revert r25273, 25283 & 25439 (the hyperslab improvement changes). They are buggy and it's taking me a long time to correct the problem. I'll check in a revised form of the changes when I've got them straightened out. Tested on: Mac OSX 10.10.0 (amazon) w/gcc 4.9.x, C++, FORTRAN Linux 2.6.x (jam) w/parallel
* [svn-r25750] use MPI_File_get_size() instead of stat when retrieving the ↵Mohamad Chaarawi2014-10-281-4/+17
| | | | file size for the MPIO driver.
* [svn-r25659] fix filename generation with prefix for perf test.Mohamad Chaarawi2014-10-022-22/+76
| | | | tested h5commitest, jam & platypus parallel.
* [svn-r25607] Add 10 sec timeout to VFD - flush2 tests instead of default 20 min.Allen Byrne2014-09-221-0/+1
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* [svn-r25531] remove use of C99 PRI that failed on windows in dtypes.cMohamad Chaarawi2014-08-115-55/+65
| | | | fix bugs where hid_t were assumed to be 32 bit ints or herr_t.
* [svn-r25527] fix printf format warnings in dtypes test.Mohamad Chaarawi2014-08-111-2/+2
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* [svn-r25500] fix HDFFV-8888 - H5Ldelete_by_idx fails on non-existent group name.Mohamad Chaarawi2014-07-311-0/+6
| | | | tested Jam. minor change.
* [svn-r25496] Description:Quincey Koziol2014-07-3021-112/+109
| | | | | | | | | Merge 64-bit ID changes from branch to trunk. (Plus a few minor cleanups that aren't on the branch) Tested on: Mac OSX/64 10.9.4 (amazon) w/C++ & FORTRAN (h5committested on branch already for a week)
* [svn-r25468] some code refactoring to align trunk with VOL branch.Mohamad Chaarawi2014-07-221-4/+1
| | | | tested with h5committest.
* [svn-r25465] BUg fix: HDFFV-8881Albert Cheng2014-07-221-9/+14
| | | | | | | | | | | testfrome.c has incorrectly exit code (using -1). Fixed by replacing them with C defined EXIT_FAILURE. Verified by temporary decreaing MAXNUMTESTS to introduce failure in testhdf to see the changed code did work. Also replaced all other correctly coded exit codes with the C defined EXIT_SUCCESS and EXIT_FAILURE. This would help portability for non-Unix systems. Tested: h5committest.
* [svn-r25450] Description:Quincey Koziol2014-07-211-1/+0
| | | | | | | | Initial tweaks to align with VOL branch. Tested on: Mac OSX/64 10.9.3 (amazon) w/gcc 4.9 (h5committest not required, too small)
* [svn-r25401] add serial and parallel regression tests for zero dset ↵Mohamad Chaarawi2014-07-091-0/+76
| | | | read/write bug.
* [svn-r25397] - remove configure checks for MPI_File_get_size and BigMohamad Chaarawi2014-07-071-1/+0
| | | | | MPI_File_set_size as they are supported by most MPI implementations. - fix bug in t_mpi.c (HDFFV-8856)
* [svn-r25357] Change default timeout to 1200 seconds or 20 minsAllen Byrne2014-06-251-4/+4
| | | | adjust up for certain tests.
* [svn-r25343] Add more vfd tests to smaller timeout limitsAllen Byrne2014-06-231-0/+3
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* [svn-r25310] Add max time for VFD objcopy testAllen Byrne2014-06-181-0/+1
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* [svn-r25283] Description:Quincey Koziol2014-06-141-16/+16
| | | | | | | | | | Correct error in new hyperslab selection test to use the right # of dimensions for start/stride/count/block arrays. Also, switch H5Sselect_select to H5Smodify_select. Tested on: MacOSX/64 10.9.3 (amazon) w/gcc 4.9.1, OpenMPI, C++, FORTRAN & threadsafe (Too minor to require h5committest)
* [svn-r25273] Description:Quincey Koziol2014-06-131-298/+1523
| | | | | | | | | | | Bring in Chao/Neil/my changes to optimize hyperslab selection operations further, along with 3 new public API routines: H5Scombine_hyperslab(), H5Sselect_select() and H5Scombine_select(), along with many minor cleanups to the code and fixing a few compiler warnings. Tested on: Mac OSX/64 10.9.3 w/gcc 4.9.x and parallel w/OpenMPI (h5commttest forthcoming)
* [svn-r25261] limit vfd flush1 test timeAllen Byrne2014-06-111-0/+1
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* [svn-r25188] Implement change to cmake_ext_mod config folderAllen Byrne2014-05-142-10/+13
| | | | Tested: local linux
* [svn-r25117] Removed LT_ADD_LIBHDF5_DEPENDENCY configure conditional to roll ↵Larry Knox2014-04-251-1/+0
| | | | | | | | | | | back fix for removing rpaths from l ib files. The fix also removed dependencies on libhdf5, etc. when the --disable-sharedlib-rpath co nfigure option was invoked. Added instead configure variable hardcode_into_lib=no. This removes rpath from lib files on Linux and solaris machines. Tested with h5committest on jam, koala, ostrich and platypus (cmake), and with configure option --disable-sharedlib-rpath on emu, platypus and quail.
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