| Commit message (Collapse) | Author | Age | Files | Lines |
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Straighten out some convoluted code when links were being deleted, which
could cause the "delete" callback for user-defined links to not get called when
the group they were in was deleted.
Had to compromise on the "delete" callback though - only calls the callback
with the ID for the file the link is in, instead of the group, since the group
is being held open upstream in the calling sequence during a group deletion and
this prevents a group and its ID from being created. (This could possibly be
worked around, but would cause a fair bit of havoc in the code and I'm not
entirely certain it's worth it...)
Tested on:
Linux/32 2.6 (chicago)
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Oops!
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This feature is still in progress; Shared Object Header Messages are not
complete as a feature and are not thoroughly tested. There are still
"TODO" comments in the code (comments with the word "JAMES" in them,
so as not to be confused with other TODO comments).
Hopefully this checkin will reduce the liklihood of conflicts as I finish
implementing this feature.
All current tests pass on juniper, copper (parallel), heping, kagiso, and mir.
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Add new H5Lget_val_by_idx() routine & tests.
Also includes most of changes for H5Ldelete_by_idx() routine.
Tested on:
Mac OS X/32 10.4.8 (amazon)
FreeBSD/32 4.11 (sleipnir)
Linux/32 2.4 (heping)
Linux/64 2.4 (mir)
AIX/32 5.? (copper)
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Add H5Lget_name_by_idx routine & tests
Move more H5G routines to deprecated API file
Tested on:
FreeBSD/32 4.11 (sleipnir) w/threadsafe
Linux/32 2.4 (heping) C++ & FORTRAN
Linux/64 2.4 (mir) w/build-all & enable_compat1.6
AIX/32 5.? (copper) w/parallel & FORTRAN
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Add H5Rget_name routine and tests...
Tested on:
FreeBSD/32 4.11 (sleipnir)
Linux/32 2.4 (heping)
Linux/64 2.4 (mir)
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Finished implementation of H5Lget_info_by_idx for all cases: old vs. new
group formats, compact vs. dense new link storage, increasing vs. decreasing
vs. native iteration order.
Also, refactor symbol table "foo by index" routines to be more generic
and share more code by using a single B-tree iteration callback which makes
callbacks to a specific "get <foo>" callback.
Tested on:
Mac OS X/32 10.4.8 (amazon)
FreeBSD/32 4.11 (sleipnir)
Linux/32 2.4 (heping)
Linux/64 2.4 (mir)
AIX/32 5.? (copper)
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Should disable linking against shared libraries in Fortran for compilers that
don't support shared libraries.
Should also fix problem when the wrong Fortran file extension was specified.
If these changes don't solve the Daily Test issues, I'll look at backing out
the autotool version change until I have time to fix them.
Tested on heping, kagiso, juniper.
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Linux machines.
Updated to the latest versions of autotools.
Tested on kagiso, heping, and juniper. Let me know if you have any problems.
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Description: Fix some memory-related bugs in the data transform code
Tested:
kagiso w/ valgrind 3.2.1
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Flesh out support for looking up link info by index, some cases for using
dense storage are working now.
Tested on:
Linux/32 2.6 (chicago)
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Clean up more compiler warnings.
Tested on:
Linux/64 2.6 (chicago2)
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Fix retrieving name for references to root group.
Also, move 'ref' test earlier in testing, right after 'getname' test
Tested on:
Linux/64 2.6 (chicago2)
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Add support for reverse index lookup to v2 B-trees (needed for reverse
index lookup of links in groups)
Tested on:
Linux/64 2.6 (chicago2)
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Implement basic framework for H5Lget_info_by_idx and get it working for
creation order indices on compact groups.
Clean up code a bit.
Close resource link in user-defined link traversal.
Tested on:
Linux/32 2.6 (chicago)
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systems like copper and sleipnir
doesn't require alignment for Direct I/O. If this's true, write or read data just like sec2
does.
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Rename new H5Gcopy() routine to H5Ocopy() as discussed in last Friday's
design discussion.
Tested on:
Linux/32 2.6 (chicago)
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Change name of H5Lunlink to H5Ldelete, per our design meeting last Friday.
Tested on:
Linux/32 2.6 (chicago)
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Changed H5Lget_linkval() to H5Lget_val(), per our design discussion last
Friday afternoon.
Tested on:
Linux/32 2.6 (chicago)
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Add actual error checking and set return value if a test fails.
Tested on:
FreeBSD/32 4.11 (sleipnir)
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Update H5Iget_name() tests to reflect that the name of the object for an
ID can be found in many more situations now.
Tested on:
FreeBSD/32 4.11 (sleipnir)
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Description: Test the ability to determine a path name given an object reference
Tested:
kagiso, sol
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Refactor generic property list initialization code to put property list
specific routines in property list modules, instead of scattered to the four
winds. Also, introduce property list class initialization objects, to make
adding new property list classes in the library easier.
Fix daily test failure by using H5Pget_elink_prefix() API routine instead
of looking at the "raw" generic property list information.
Tested on:
Mac OS X/32 10.4.8 (amazon)
FreeBSD/32 4.11 (sleipnir) w/threadsafe
Linux/32 2.4 (heping) w/C++ & FORTRAN
Linux/64 2.4 (mir) w/build-all & 1.6 compat
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Change H5Lget_linkinfo() to H5Lget_info() to better align with coming API
changes.
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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Uncomment out tests that were accidentally left out.
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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Clean up more warnings...
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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the size of
the linkval buffer, per Elena and Frank's suggestions while revising
the documentation. Added error checking using this size, as well as a
couple of tests.
Tested on juniper, kagiso, and sol.
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Finish internal work necessary to track creation order in v2 B-tree when
group is in "dense" storage form.
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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Clean up more compiler warnings, esp. on Linux/64 platform.
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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Clean up compiler warnings...
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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Correct typo that was causing tests to fail.
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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Rudimentary support for creating creation order index (but not inserting
links in it yet).
Testedon:
Mac OS X/32 10.4.8 (amazon)
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Add support for compress heap blocks in "managed" heaps.
Also, fix bug when the first direct block moves between having a parent
and not having one (and vice versa), which occurs when the heap moves between
having a direct root block and having an indirect root block.
Tested on:
FreeBSD 4.11 (sleipnir) w/threadsafe
Linux/32 2.4 (heping) w/C++ & FORTRAN
Linux/64 2.4 (mir) w/build-all & 1.6 compat
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made the test more complete by writing
two data sets. One is aligned, and the other isn't.
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Clean up compiler warnings, esp. on 64-bit Linux boxes.
Tested on:
FreeBSD/32 4.11 (sleipnir) w/threadsafe
Linux/32 2.4 (heping) w/C++ & FORTRAN
Linux/64 2.4 (mir) w/build-all & 1.6 compat
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size is set through
H5Pset_fapl_direct. It's been added to H5FD_direct_read in the previous checkin. Still, a test is
needed at later checkin.
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Reduce memory usage for common cases of I/O pipeline filter memory usage.
Also, clean up some more code...
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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existence of szip encoder.
Windows picked this up. Tested with VS 6.0 with szip enabled.
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Finish new version of the I/O pipeline message, which is much smaller than
the previous version. This version is used with the "use the latest version
of the format" flag.
Closed several memory leaks/overruns (found with valgrind).
Also, lots of compiler & formatting cleanups.
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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Fix several errors in the "latest version" of the object header format
changes and enable the new version when requested now.
Clean up several confusing or duplicated sections of code.
Tested on:
Linux/32 2.4 (heping)
Linux/64 2.4 (mir)
FreeBSD/32 4.11 (sleipnir)
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H5Pset_fapl_direct be a structure and passed
through driver info functions in H5FD_direct_open, H5FD_direct_read, and H5FD_direct_write. The
external change is to add a new API function H5Pget_fapl_direct to query 3 control values, the
memory boundary, file system block size, and the maximal buffer size for copying data.
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handle flush callbacks which can dirty other entries, and
resize and/or rename the target entry.
This feature is needed by the fractal heap code.
Also added associated test code.
H5Commit tested. Test failed on heping, but the
error appears to be a syntax error in an un-related
file.
Tests on copper & sol passed, along with tests on
phoenix.
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Add 'initval' parameter to "lookup3" checksum routine (and implicitly to
the metadata checksum routine), to allow chaining several checksums together
easily (which isn't used by these modules, but will be used in my next checkin)
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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Code cleanup to improve formatting & reduce compiler warnings.
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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H5Pset_fapl_direct to control
memory boundary, file block size, and maximal copy buffer size; second in H5FD_direct_write and
H5FD_direct_read, the library checks whether data buffer is aligned. If it is, then write and
read the data directly instead of making a copy buffer.
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Fix errors with check-vfd and recent modifications to tests.
Tested on:
Linux/64 2.4 (mir) w/check-vfd
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Bug fix (related to 544)
Description:
h5_get_file_size() was coded to return 0 if failed but
file size can be 0. Changed the failure return value to -1
which is allowed by the returned type of off_t which is a signed
type.
Also changed the checking code of the stat call to just == 0
since that is how it is defined.
Test:
Could test it in heping only. Both Sol and Copper failed to
compiled due to error in the Direct IO VFD code.
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the calling process.
So new flush2 tests generates false failures for DLL version on windows.
Two cases of flush2 tests were skipped temporarily on windows.
The inserted windows macros should be removed when a better solution is found.
Tested on vs6.0 and vs 7.1 and Linux.
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only tested
if it is enabled.
Added Direct VFD status to the configure summary.
Removed a line left over from pablo support. Oops!
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Update datasets and the layout, attributes and fill-value
object header messages to use the latest version
of the file format flag.
Tested on:
FreeBSD 4.11 (sleipnir)
Linux/64 2.4 (mir)
Linux/32 2.4 (heping)
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