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* Merge remote-tracking branch 'hdffv/develop' into rebased-fprintf-experimentDavid Young2020-07-307-3/+529
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| * Fixed additional typos in tselect.c comments.Dana Robinson2020-07-281-2/+2
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| * Fixes typo in tselect.cDana Robinson2020-07-281-1/+1
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| * Updates H5Sset_extent_none() to set H5S_NULLDana Robinson2020-07-281-2/+78
| | | | | | | | | | | | | | | | The API call used to set the internal H5S_NO_CLASS value which produced errors when such a dataspace was passed to many other API calls. Fixes HDFFV-11027
| * Merge pull request #2693 in HDFFV/hdf5 from ↵Vailin Choi2020-07-175-1/+181
| |\ | | | | | | | | | | | | | | | | | | | | | ~VCHOI/my_third_fork:bugfix/HDFFV-11080-heap-use-after-free-by-the-call to develop * commit '3023b34272cc6ada84aebfa7441a6a55afa3621c': Update MANIFEST. Add new test to Cmake. Fix for jira issue HDFFV-11080: (1) Patch up the file pointer when reading attribute of variable length datatype (2) Test to verify the fix when doing multiple threads
| | * Update MANIFEST.vchoi2020-07-161-0/+1
| | | | | | | | | | | | Add new test to Cmake.
| | * Fix for jira issue HDFFV-11080:vchoi2020-07-144-1/+180
| | | | | | | | | | | | | | | (1) Patch up the file pointer when reading attribute of variable length datatype (2) Test to verify the fix when doing multiple threads
| * | H5R: fix type conversion of references within vlen typeJerome Soumagne2020-07-161-0/+270
| |/ | | | | | | Update trefer.c with vlen test case
* | Fix code that made GCC complain about a NULL or `unsigned char *` arguments forDavid Young2020-07-072-28/+47
| | | | | | | | | | | | "%s". XXX The duplication between test/ros3.c test/s3comms.c is really annoying.
* | Correct a couple of format strings.David Young2020-07-071-2/+4
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* | Use PRIuHSIZE and PRIXHSIZE for portability.David Young2020-07-071-2/+2
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* | Squash my changes on branch `fprintf-experiment` into one commit forDavid Young2020-07-0714-85/+89
|/ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | reapplication to my new warnings branch, `warnings-again`. These changes are included: commit 915551b7bf64e777dd2007386ec77b1d117770da Merge: 63858c2 a8892bb Author: David Young <dyoung@hdfgroup.org> Date: Mon Nov 25 17:39:49 2019 -0600 Merge remote-tracking branch 'hdf5/develop' into fprintf-experiment commit a8892bb42d6f6e4fbc30fae0eb2b957f81c938b9 Merge: 5c911d8 f907b51 Author: David Young <dyoung@hdfgroup.org> Date: Mon Nov 25 17:33:54 2019 -0600 Merge pull request #2055 in HDFFV/hdf5 from ~DYOUNG/vchoi_fork:add-werror-and-squash-some to develop * commit 'f907b511d06612dafc7814a7c30f2f3d2b76d52b': Oops, remove more C99 designated initializers for VS 2010 compatibility. commit 63858c22e168acaec0af8ced6641f26102cc6bb0 Merge: 20ae787 5c911d8 Author: David Young <dyoung@hdfgroup.org> Date: Mon Nov 25 17:04:42 2019 -0600 Merge remote-tracking branch 'hdf5/develop' into fprintf-experiment commit 5c911d8baf3ee7fe654269088eebdf07f59a8192 Merge: b8a5671 62208b0 Author: David Young <dyoung@hdfgroup.org> Date: Mon Nov 25 16:58:27 2019 -0600 Merge pull request #2030 in HDFFV/hdf5 from ~DYOUNG/vchoi_fork:add-werror-and-squash-some to develop * commit '62208b056a09c01855fbac7f75146be58ad6bfe5': (44 commits) Add an #include to get a function declaration. Don't use C99 designated initializers, they're not compatible with Visual Studio 2010. Quiet some more maybe-uninitialized warnings---each is a false positive, *sigh*. This is more code that may not compile with VS2010, *sigh sigh*. Always warn on maybe-uninitialized. -Wincompatible-pointer-types was not available until GCC 5, so enable it only if that's the GCC version we're using. Only promote maybe-uninitialized warnings to errors on GCC 8. Even on GCC 8, there may be false positives at low optimization levels? I need to check. Only use -Werror=cast-function-type with GCC 8 and later. Put all of the -W options back into the order I found them in so that it's easier to compare old and new config/gnu-flags. Add new source files to CMakeLists.txt. Mention the -Werror= flags in libhdf5.settings.in. free -> HDfree Promote decleration-after-statement warnings to errors. Quiet decleration-after-statement warnings. Move a statement under some declarations since some vintages of Visual Studio don't like declarations after statements. Document H5D__chunk_mem_xfree_wrapper(). Undo accidental test deletion. Oops, delete a debug printf that snuck in here. Undo my changes to the HD macros, hadn't really intended those to be on this branch.... Make errors of some more warnings. Move disabled warnings to DEVELOPER_WARNING_CFLAGS. Put just one warning option on a line, and sort some of the options. Cast to the parameter type, H5VL_token_t *, instead of to unsigned char *. Change hdset_reg_ref_t and H5R_ref_t from arrays of unsigned char to structs containing those arrays. Encapsulating the arrays in this way makes it easier to write and think about pointers to these types, casts to/from these types, etc. ... commit 20ae7877e33931b95e8c3502b027d6c3fe94a11f Merge: 46f8c61 edd5297 Author: David Young <dyoung@hdfgroup.org> Date: Fri Nov 22 15:34:09 2019 -0600 Merge remote-tracking branch 'origin/add-werror-and-squash-some' into fprintf-experiment commit 46f8c613d5117a8be5bc8385a072daa0b4262f06 Author: David Young <dyoung@hdfgroup.org> Date: Fri Nov 22 15:29:00 2019 -0600 GCC really wants us to use `ll` to format `long long`, so try to make that work before any other format modifier. Seems like we're not compiling the autoconf test program with -Werror=format ? Probably should. commit eee35b8ef3759c391327cd48a9b3c56b6f8abc99 Author: David Young <dyoung@hdfgroup.org> Date: Fri Nov 22 15:28:05 2019 -0600 It's hard to know just how wide an HDoff_t will be, and I don't think POSIX or C standards provide a PRI macro for it, so cast to intmax_t and format using PRIdMAX. commit 86eab12df7a89b546a38e99f8178dd2adbcb3433 Author: David Young <dyoung@hdfgroup.org> Date: Fri Nov 22 15:26:25 2019 -0600 URemove some casts.se the right format string for the argument. Here and there stop casting a printf argument. commit f722f7cbecbaa99449941484b014426f62f1bed5 Merge: 58e3743 6d5ec83 Author: David Young <dyoung@hdfgroup.org> Date: Fri Nov 22 14:44:16 2019 -0600 Merge branch 'add-werror-and-squash-some' into fprintf-experiment commit 58e3743b7faa9836606ee91798fe80dfc0040da7 Author: David Young <dyoung@hdfgroup.org> Date: Wed Nov 20 21:07:21 2019 -0600 Remove custom HDfprintf implementation, using the standard library's, instead. Take a swipe at repairing fprintf format strings, mainly replacing "%Hu" with "%" PRIuHSIZE, "%a" with "%" PRIuHADDR, "%Zu" with "%zu". Here and there remove an awkward cast of a printf argument to `long long` and use PRI[doux]8, PRI[doux]32, or PRI[doux]64, instead. Change occurrences of "%t" to "%s" and perform a suitable change of argument, `cond` -> `cond ? "TRUE" : "FALSE"`. Some occurrences of %Hu, %a, and %t remain, they just weren't flagged by the compiler because of #ifdef'age. commit d4366909293fa970c23512ac80e5d865d76cddbf Author: David Young <dyoung@hdfgroup.org> Date: Wed Nov 20 20:54:32 2019 -0600 Promote format-string warnigns to errors.
* Add new source files to CMake buildQuincey Koziol2020-06-281-0/+1
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* Clean up warningsQuincey Koziol2020-06-281-21/+20
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* Merge remote-tracking branch 'origin/develop' into monotonic_timerQuincey Koziol2020-06-273-54/+134
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| * * Fix intermittent error with Splitter VFD.Jacob Smith2020-06-253-54/+134
| | | | | | | | | | | | | | | | Mismatch in time of test file creation was creating false negatives. Add file-duplication routine: `h5_duplicate_file_by_bytes()`. * Change library calls in `h5test.c:h5_compare_file_bytes()` to their HD-prefixed equivalents.
* | Merge remote-tracking branch 'origin/develop' into monotonic_timerQuincey Koziol2020-06-26226-49539/+88368
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| * Merge pull request #2615 in HDFFV/hdf5 from ↵Jake Smith2020-06-151-1/+2
| |\ | | | | | | | | | | | | | | | | | | ~JAKE.SMITH/hdf5:bugfix/splitter_valgrind_patch to develop * commit '6462c67b6578e48c1ef6d847be59c0b5e3598a50': Patch a few holes in the Splitter VFD implementation.
| | * Patch a few holes in the Splitter VFD implementation.Jacob Smith2020-05-291-1/+2
| | | | | | | | | | | | | | | * Missing logfile close on driver-open failure. * Initialize empty string in test/vfd (logfile path in W/O compat check).
| * | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Larry Knox2020-06-071-7/+7
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | * commit 'aa338c3a87a4544ccb164832422e3e2462a57b88': Detect when there's the same-shaped selection of a single block of elements on both selections, but with different selection types (i.e. one selection defined as an 'all' type and the other as a hyperslab or point type), without falling into the generic selection iteration case. Normalization of H5T.c with 1.10. Normalization of H5D.c with 1.10.
| | * | Detect when there's the same-shaped selection of a single block of elements onQuincey Koziol2020-06-051-7/+7
| | | | | | | | | | | | | | | | | | | | | | | | both selections, but with different selection types (i.e. one selection defined as an 'all' type and the other as a hyperslab or point type), without falling into the generic selection iteration case.
| * | | Add flags from config/clang-warnings/*general files to H5 C and CXX flags ↵Larry Knox2020-06-061-3/+3
| |/ / | | | | | | | | | | | | | | | | | | for all versions of Clang and Clang++ compilers. Switched from cut to awk in testcheck_version.sh.in to avoid dependence on tab vs. " " in version definitions in H5public.h.
| * | Normalizations with 1.10 branch.Dana Robinson2020-06-021-4/+4
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| * Minor tweaks to testhdf5 code after normalization with 1.10.Dana Robinson2020-05-282-45/+45
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| * Misc warning fixes.Dana Robinson2020-05-104-18/+39
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| * Align contents of CMake and autotools testfile cleanup lists.Quincey Koziol2020-05-032-90/+49
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| * Avoid allocating a chunk index for datasets with 0-sized dimensions, untilQuincey Koziol2020-05-012-20/+214
| | | | | | | | the dataset is extended.
| * Merge pull request #2541 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor ↵Dana Robinson2020-04-271-0/+59
| |\ | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit 'c03ee563f46013d22f36a1895664a9ba876558e9': Further updates to the tools warnings fixes from code review. Updates to tools warning PR from code review. Fixes for warnings in the tools code.
| | * Updates to tools warning PR from code review.Dana Robinson2020-04-261-4/+4
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| | * Fixes for warnings in the tools code.Dana Robinson2020-04-251-0/+59
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| * | For compatibility with non-C99 Visual Studio versions, use "%" PRIuMAXDavid Young2020-04-241-2/+2
| | | | | | | | | | | | instead of "%ju".
| * | Fix `test/swmr_sparse_reader.c:118:77: error: cast from pointerDavid Young2020-04-241-2/+2
| |/ | | | | | | | | | | | | to integer of different size [-Werror=pointer-to-int-cast]` and `test/snapshots-hdf5/current/test/swmr_sparse_reader.c:129:100: error: cast from pointer to integer of different size [-Werror=pointer-to-int-cast]`.
| * Trim trailing whitespaceQuincey Koziol2020-04-2067-517/+517
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| * Merge branch 'develop' of ↵Jacob Smith2020-04-074-352/+1096
| |\ | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~jake.smith/hdf5 into feature/vfd_splitter_mirror_a
| | * Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2020-04-071-0/+553
| | |\ | | | | | | | | | | | | | | | | | | | | | | | | * commit 'f6514c35ea3786206a8db73e1cad8fce8fe6a715': Updated test ddl files so CMake passes after h5dump failures. Modifications based on PR review feedback. Add two routines gen_ref_files() and gen_sel_files() to generate test files related to references and selections. These test files will be copied to 1.12, 1.10 and 1.8 for compatibility testing.
| | | * Merge pull request #2472 in HDFFV/hdf5 from ↵Vailin Choi2020-04-061-0/+553
| | | |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~VCHOI/my_third_fork:bugfix/bounds_compat to develop * commit '3f081c99376ad562dcb6bbf7d6c11216f682aca7': Modifications based on PR review feedback. Add two routines gen_ref_files() and gen_sel_files() to generate test files related to references and selections. These test files will be copied to 1.12, 1.10 and 1.8 for compatibility testing.
| | | | * Modifications based on PR review feedback.vchoi2020-04-011-71/+51
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| | | | * Add two routines gen_ref_files() and gen_sel_files() to generate test files ↵vchoi2020-03-261-0/+573
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | related to references and selections. These test files will be copied to 1.12, 1.10 and 1.8 for compatibility testing.
| | * | | Minor updates and fix settings for fortran flagsAllen Byrne2020-04-061-1/+0
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| | * | | TRILAB-192 add c++ and fortran warnings build systems one fileAllen Byrne2020-04-051-3/+15
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| | * | Merge pull request #2461 in HDFFV/hdf5 from ↵Vailin Choi2020-04-021-348/+388
| | |\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~VCHOI/my_third_fork:bugfix/dtype_close_on_error to develop * commit 'afdcac28b85d690eebc80ab568fa5266081baaaa': A fix in the cleaning up code for datatype when datatype initialization via H5D__init_type() fails. This is triggered by the tests for revised references when the libver bounds setting does not allow version 4 datatype message to be created. The test failure is abort core dumped. This is due to the datatype initialization fails before the datatype ID is registered. The datatype cleanup code should provide for the above situation. The code to fix the problem is the same as what is done in H5D__open_oid().
| | | * | A fix in the cleaning up code for datatype when datatype initialization via ↵vchoi2020-03-231-348/+388
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | H5D__init_type() fails. This is triggered by the tests for revised references when the libver bounds setting does not allow version 4 datatype message to be created. The test failure is abort core dumped. This is due to the datatype initialization fails before the datatype ID is registered. The datatype cleanup code should provide for the above situation. The code to fix the problem is the same as what is done in H5D__open_oid().
| | * | | Refactor to reduce verbosity.Quincey Koziol2020-03-261-55/+33
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| | * | Correct macro checkQuincey Koziol2020-03-251-1/+1
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| | * | Correct failure when allocation tracking are disabled.Quincey Koziol2020-03-241-0/+12
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| | * | Revise API for H5get_alloc_stats() to take a struct instead of separate values.Quincey Koziol2020-03-201-38/+30
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| | * | Merge remote-tracking branch 'origin/develop' into alloc_statsQuincey Koziol2020-03-201-1/+20
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| | | * Fix threadsafe for new testAllen Byrne2020-03-181-1/+20
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| | * | Add routines to query the library's free list sizes and allocation stats.Quincey Koziol2020-03-101-0/+139
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| * | Tidying of Mirror VFD.Jacob Smith2020-04-073-30/+51
| | | | | | | | | | | | | | | | | | | | | * Rename server-stop utility to mirror_server_stop. * Remove external dependency on bzero(). * Modify test/use_common to use only the public API. * Rename internal bitswap macro to follow convention.
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