| Commit message (Collapse) | Author | Age | Files | Lines |
... | |
| |
| |
| |
| |
| |
| | |
avoid the segfault with looking for the library with other libraries.
Tested: local linux
|
| |
| |
| |
| | |
Review & cleanup code.
|
| |
| |
| |
| |
| |
| | |
Windows support.
Tested on koala.
|
| | |
|
| |
| |
| |
| | |
Tested: local linux
|
| |
| |
| |
| |
| |
| | |
checkin of the DESY project.
Tested on koala.
|
| | |
|
|/
|
|
|
|
| |
of loading dynamically filter libraries and a simple test for it.
Tested on koala.
|
|
|
|
|
|
|
|
|
|
|
| |
Description:
Adds 2 new API functions, H5Dscatter and H5Dgather. H5Dscatter retrieves data
from a specified callback function and scatters it into a selection, defined by
a supplied dataspace, within a supplied memory buffer. H5Dgather gathers data
from a selection within a supplied memory buffer and passes it in a contiguous
form to a supplied callback function. Added tests for these functions
Tested: jam, ostrich, koala (h5committest); ummon
|
|
|
|
|
|
| |
tests.
Tested: jam (pgcc), ummon (gcc)
|
|
|
|
|
|
|
|
|
|
|
| |
Description:
Adds 2 new API functions, H5Dscatter and H5Dgather. H5Dscatter retrieves data
from a specified callback function and scatters it into a selection, defined by
a supplied dataspace, within a supplied memory buffer. H5Dgather gathers data
from a selection within a supplied memory buffer and passes it in a contiguous
form to a supplied callback function. Added tests for these functions
Tested: jam, ostrich, koala (h5committest); ummon
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bring reviewed changes from Coverity branch back to trunk (QK & JK):
r20457:
Coverity issue 691: return of H5duo could be negative. Fixed by using
STDOUT_FILENO and redesign parse_command_line and main to cleanup file
allocations. The output_file var is null when using stdout. In cleanup do not
close output_file if NULL.
r20510:
Initialize ufid = -1 and predicate HDclose call on ufid != -1
r20511:
Purpose: Fix coverity issue 1715
Description: Free "file" and nested data on failure in H5FD_core_open.
r20512:
Initialize ifid = -1 and predicate HDclose call on ifid != -1
r20514:
Initialize h5fid = -1 and predicate HDclose call on h5fid != -1
r20516:
Added else branch to the if (ret_value < 0) check.
r20522:
Addressed coverity issues 930-933, 850, 836, 835, 1307. All minor
potential buffer overwrite bugs, or coverity errors. Fixed by replacing
strcpy and sprintf with strncpy and snprintf.
r20523:
fixed coverity issues 68, 1120, 1116i
r20524:
Check H5Z_SZIP->encoder_present < 1 assuming 0 represents absence.
r20601:
Purpose: Fix coverity issues 1703-1705
Description: Modified the cleanup code in test_free in accum.c to reset
allocated buffers to NULL after they are freed, and modified the error cleanup
code to check if these buffers are NULL before freeing them. Also fixed some
unrelated warnings in accum.c.
r20602:
Use HDsnprintf and HDstrncat
r20603:
Purpose: Fix coverity issues 808-809
Description: Modified test_core in vfd.c to check the returns from malloc, and
keep track of whether points and check are allocated by setting them to NULL
when they are not. Added code to free points and check on error if they are
not NULL. Also fixed unrelated warnings in vfd.c.
r20604:
Use HDstrncpy.
r20605:
Use HDstrncpy and HDstrncat.
r20606:
Purpose: Fix coverity issue 807
Description: Modified long_compact in stab.c to keep track of whether objname is
allocated by setting it to NULL when it is not. Added code to free objname on
error if it is not NULL.
r20607:
Changed string function calls to use versions that specify the string length
to fix coverity issues 832 and 839.
Tested on:
Mac OSX/64 10.8.2 (amazon)
(Too minor to require h5committest)
|
| |
|
|
|
|
|
|
| |
related test and performance test.
Tested on koala.
|
|
|
|
|
|
| |
disabled.
Tested on koala.
|
| |
|
|
|
|
|
|
|
|
|
|
| |
hl/test/test_dset_opt.c. I added
hl/test/dectris_hl_perf.c
perform/dectris_perf.c
test/dectris_tst.c
Tested on koala.
|
|
|
|
|
|
|
|
|
| |
Dectris people to test performance. The library's API function H5PSIdirect_write
is still in. I reorganized the internal library by adding H5D__pre_write function.
Tested on koala.
|
| |
|
|\ |
|
| |
| |
| |
| |
| |
| | |
autotools TESTS var, rename configure.in to configure.ac, convert test scripts from hard *.sh to configure managed *sh.in files.
Tested: h5committest
|
| |
| |
| |
| |
| |
| | |
libtool 2.4.2
Tested THG machines.
|
| |
| |
| |
| | |
H5FD_FLMAP_SINGLE to H5FD_FLMAP_DICHOTOMY.
|
| |
| |
| |
| |
| |
| |
| |
| |
| | |
Have free space manager use temporary address space for storing the
section info, until the file is flushed or closed.
Tested on:
Mac OSX/64 10.7.4 (amazon) w/debug, gcc 4.7.x, C++, FORTRAN & threadsafe
(h5committest forthcoming)
|
| |
| |
| |
| |
| |
| |
| |
| |
| | |
Changes resulting from Klocwork static analysis tool, from Mark Miller
@ LLNL (miller86@llnl.gov).
Tested on:
Mac OS X/64 10.7.4 (amazon) w/debug, C++ & FORTRAN, using gcc 4.7.x
(too minor to require h5committest)
|
| |
| |
| |
| |
| |
| |
| |
| | |
H5PSIdirect_write from RANK+1 to RANK. But internally, it expands to RANK+1 as
the library requires it to terminate with a zero.
Tested on koala.
|
| |
| |
| |
| | |
Tested on koala.
|
| |
| |
| |
| |
| |
| | |
comments. I added a performance benchmark program dectris_perf.c in the test/ directory.
Tested on koala and jam.
|
|/
|
|
| |
Tested on koala and jam.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Description:
When jumping out from between H5_BEGIN_TAG and H5_END_TAG macros using
HGOTO_ERROR or HGOTO_DONE, the previous metadata tag is not reset on the dxpl.
This could cause problems when, for example, calling H5Ocopy within an
H5Literate callback.
Added new HGOTO_ERROR_TAG and HGOTO_DONE_TAG macros which must be used in place
of the above between H5_BEGIN_TAG and H5_END_TAG.
Tested:
jam, koala, ostrich (h5committest), durandal
|
|
|
|
|
|
|
|
|
| |
Refactor ID class registration to be more like how other "class"s in the
library are registered, and clean up compiler warnings.
Tested on:
Mac OSX/64 10.7.4 (amazon) w/debug
(Too minor to require h5comittest)
|
| |
|
|
|
|
| |
Fix typo with last change and reformat a little bit
|
|
|
|
|
|
|
|
|
|
|
|
| |
Copy the file image test file from the source directory to the build
directory, instead of trying to open the [in-memory] file R/W.
Also, clean up a few other test files that were left lying around from
other tests.
Tested on:
MacOSX/64 10.7.4 (amazon) w/debug
Too minor to require h5committest
|
|
|
|
|
|
|
| |
(2) fix to extend into the aggregator based on threshold
(3) fix for the "flavor" logging problem
(4) fix for test failures due to the above fixes
(5) bug fix for h5stat when h5stat against a non-existing file
|
|
|
|
|
|
| |
adding cast
Tested: local linux
|
|
|
|
|
|
| |
them in this commit.
Tested on jam - very simple change.
|
|
|
|
|
|
|
|
| |
same property in property list multiple times.
fix that bug.
test with h5committest
|
|
|
|
|
|
|
|
| |
Clean up more FUNC_ENTER/FUNC_LEAVE macros and move H5D & H5T code toward
the final design (as exemplified by the H5EA & H5FA code).
Tested on:
Mac OSX/64 10.7.3 (amazon) w/debug & parallel
|
|
|
|
| |
Tested: windows under debug
|
|
|
|
| |
Tested: local linux
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Correct several errors in fractal heap code: root indirect block was
getting pinned/protected more than once, "single" free space sections weren't
getting "re-parented" correctly when the heap transitioned between having a
root indirect block and a root direct block, and several related issues. Also
cleaned up some warnings in library/tests.
Tested on:
FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode
FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Mac OSX/64 10.7.3 (amazon) w/debug
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Add 'H5O_mcdt_search_cb_t' to bin/trace script and re-run the
bin/reconfigure script.
Tested on:
FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode
FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
|
|
|
|
|
|
|
|
| |
Merge "file image" changes from feature branch back to trunk.
Tested on:
Mac OSX/64 10.7.3 (amazon) w/debug
(h5committest upcoming)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Description:
When copying an object with attribute creation order tracked, the attribute
creation order was not copied correctly to the destination file, causing an
error if the creation order was also indexed (due to attempting to insert
duplicate keys) or incorrect creation orders otherwise. Fixed to copy the
creation order correctly.
Also fixed the attribute character set not being copied, and fixed an issue
where an attribute opened with H5Aopen (or similar, but not by_idx), from an
object using the latest format but without creation order being tracked, would
always report the creation order as 0 (and marked as valid).
Tested: jam, koala, ostrich (h5committest), durandal
|
|
|
|
|
|
|
|
|
| |
Bring "merge committed datatypes during H5Ocopy" feature from branch to
trunk. (Also has some minor bugfixes with it)
Tested on:
Mac OSX/64 10.7.3 (amazon) w/debug
(h5committest coming up)
|
|
|
|
|
|
|
| |
the object's
flush class action to ensure that cached data is flushed so that H5Ocopy will get
the correct data. (HDFFV-7853)
|
|
|
|
|
|
| |
a lack of sparse file support.
Minor change: tested on 64-bit Windows 7
|
|
|
|
|
| |
Minor change: tested on jam (test not skipped) and Mac OS-X Lion (test skipped
due to HFS not supporting sparse files).
|
|
|
|
|
|
|
|
| |
Minor code safety issue in test/fheap.c and whitespace in other files.
Tested on:
Mac OSX/64 10.7.3 (amazon) w/debug
(Too minor to require h5committest)
|