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* Remove unneeded/duplicated filesshell_scriptJordan Henderson2023-10-03983-61383/+0
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* Merge branch 'develop' into feature/vol_tools_testsJordan Henderson2023-10-03113-168/+171
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| * Fix several spelling/grammar issues (#3621)jhendersonHDF2023-10-0310-14/+14
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| * Fix Intel oneAPI icc warning (#3619)H. Joe Lee2023-09-301-2/+8
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| * Develop tools move (#3580)Allen Byrne2023-09-2660-68/+65
| | | | | | Reorganizes the tools files to support the VOL tests
| * Replaces HDgetenv with getenv (#3599)Scot Breitenfeld2023-09-2646-75/+75
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| * Use HDoff_t with lseek consistently (#3600)Dana Robinson2023-09-266-8/+8
| | | | | | | | | | lseek on Windows uses __int64 for both the offset and return type instead of off_t like most POSIX systems. This changes ensures we use HDoff_t (which is typdef'd correctly on Windows) w/ lseek.
| * Fix typo (givin->given) in test/testframe.c. (#3567)H. Joe Lee2023-09-221-1/+1
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* | Remove duplicate testfiles (#3626)Glenn Song2023-10-031013-0/+66392
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* Strip HD prefix from string/char C API calls (#3540)Dana Robinson2023-09-15144-3773/+3707
| | | | | | | | | | | | | | | | | | | | | * Strip HD prefix from string/char C API calls * HD(f)(put|get)(s|c) * HDstr* * HDv*printf * HD(s)(print|scan)f * HDperror But NOT: * HDstrcase* * HDvasprintf * HDstrtok_r * HDstrndup As those are not C99 and have portability work-around implementations. They will be handled later. * Fix th5_system.c screwup
* Remove HD prefix from math functions (#3538)Dana Robinson2023-09-145-46/+46
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* removed C_INT32_T from Fortran APIs (#3537)Scot Breitenfeld2023-09-142-31/+31
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* Consistent initialization of hid_t in the tests (#3521)Scot Breitenfeld2023-09-0893-4308/+4389
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* Convert hbool_t --> bool in test (#3494)Dana Robinson2023-09-05132-11544/+11527
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* Removed all the ranks printing out testing information (#3457)Scot Breitenfeld2023-09-012-6/+11
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* Fix an issue with use of uninitialized memory in trefer_deprec.c test (#3422)jhendersonHDF2023-08-241-0/+1
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* Implementation of the mpio driver with selection I/O. (#3222)vchoi-hdfgroup2023-08-071-4/+20
| | | | * This changes the default selection I/O to on for MPIO.
* Fix for the bug exposed from running test/set_extent.c when selection… (#3319)vchoi-hdfgroup2023-08-041-63/+124
| | | | | * Fix for the bug exposed from running test/set_extent.c when selection I/O is enabled. This is a fix from Neil. The test/set_extent.c is modified to test for selection I/O enabled.
* Fixes the last of the -Wextra-semi-stmt warnings (#3326)Sean McBride2023-08-0247-1384/+1394
| | | | | | | | | | | | | | | | | | | | | | | * Fixed extra semi warning by adjusting alternative macro definitions * Find-replace H5E_END_TRY; -> H5E_END_TRY * Made H5Epush_goto a do-while loop, fixed indentation * Made GOTOERROR and ERRMSG do-while loops * Made Hgoto_error and Hgoto_done do-while loops * Made vrfy_cint_type and vrfy_ctype do-while loops * Made TEST_TYPE_CONTIG and others do-while loops * Removed extraneous semi-colons * Committing clang-format changes --------- Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Update files to skip list and ignore_words_list (#3321)Larry Knox2023-08-021-1/+1
| | | | | * Update files to skip list and ignore_words_list for codespell to not check files generated by autotools. Autotools generate misspellings that can't be fixed in HDF5 code.
* Fix loading plugin fails with missing directory GH issue #3248 (#3315)Allen Byrne2023-08-021-0/+6
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* Fix incorrect error check in H5Ofill.c for undefined fill values (#3312)jhendersonHDF2023-08-021-3/+32
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* Another round of fixing -Wextra-semi-stmt warnings (#3264)Sean McBride2023-07-241-2/+2
| | | Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Fixed more warnings about extra semicolons (#3249)Sean McBride2023-07-182-9/+9
| | | | | | | * Require semi-colon after H5_CHECK_OVERFLOW calls Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Fix some warnings in developer builds (#3247)jhendersonHDF2023-07-184-10/+3
| | | | | * Fix some warnings in developer builds * Switch approach to Winline flag
* ROS3: (feature) Temporary security credentials (#3030)Jan-Willem Blokland2023-07-141-20/+22
| | | | | | | | | | - Implemented support for AWS temporary security credentials. For this kind of credentials also a session/security token should be included in the request by adding the x-amz-security-token header. Co-authored-by: Larry Knox <lrknox@hdfgroup.org> Co-authored-by: Jordan Henderson <jhenderson@hdfgroup.org> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Replace support.hdfgroup.org URLs for alternative COPYING file (#3228)Larry Knox2023-07-1225-23/+47
| | | | | | | | | * Replace support.hdfgroup.org URLs for alternative COPYING file locations in copyright headers with https://www.hdfgroup.org/licenses. Replace support.hdfgroup.org URL for alternative COPYING_LBNL_HDF5 with github URL. Tweak chkcopyright script for change from UICOPYRIGHTSTR to THGCOPYRIGHTSTR.
* Remove HD from HDmem* calls (#3211)Dana Robinson2023-06-29104-1741/+1739
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* Remove programmer/date from comments (#3210)Dana Robinson2023-06-29152-3894/+0
| | | | * Removes Programmer: and Date: fields * Fixes a few Modifications: fields leftover from previous work
* Remove HD from C std lib file ops (#3206)Dana Robinson2023-06-2927-157/+157
| | | | | | | | | * HDfclose * HDferror * HDfeof * HDfflush * HDfopen * HDfread * HDfwrite
* Remove HD from strto* calls (#3204)Dana Robinson2023-06-293-7/+7
| | | | | | | | * HDstrtod * HDstrtol * HDstrtoll * HDstrtoul * HDstrtoull * HDstrtoumax
* Rename HDexit() and related to exit(), etc. (#3202)Dana Robinson2023-06-2963-335/+335
| | | | | * HDatexit * HDexit * HD_exit
* Remove some "Programmer" comments (#3209)Dana Robinson2023-06-2917-65/+24
| | | | | | | | | | These are meaningless noise. Removes the "Programmer" lines on comment start lines: /* Programmer: John Smith These complicate my sed script that will rip out the rest of the comments.
* Rename HDato*() to ato*() (#3201)Dana Robinson2023-06-2915-42/+42
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* Remove HD from protected POSIX calls (#3203)Dana Robinson2023-06-293-5/+5
| | | | | | | | | | | These calls are non-C99 but protected by ifdefs and have no Windows equivalents: * HDalarm * HDasprintf * HDclock_gettime * HDfcntl * HDgethostname * HDgetrusage * HDsymlink
* Remove HD from memory allocate/free calls (#3195)Dana Robinson2023-06-28122-3191/+3188
| | | | | | * HDcalloc * HDfree * HDmalloc * HDrealloc
* Remove HD from HDposix_memalign() (#3196)Dana Robinson2023-06-281-2/+2
| | | | The posix_memalign call is only used in the direct VFD, which can only be built if posix_memalign() is available.
* Rename HD(f)printf() to (f)printf() (#3194)Dana Robinson2023-06-28136-10982/+10743
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* Rename HDassert() to assert() (#3191)Dana Robinson2023-06-2858-1508/+1498
| | | | | * Change HDassert to assert * Fix bin/make_err
* Rename HDpipe() to pipe() (#3192)Dana Robinson2023-06-281-25/+25
| | | Pipe is POSIX but implemented in Microsoft's CRT
* Rename HDqsort() to qsort() (#3193)Dana Robinson2023-06-285-14/+14
| | | | | | | | | * Rename HDqsort() to qsort() * Committing clang-format changes --------- Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Remove HD from fork/exec*/wait* (#3190)Dana Robinson2023-06-287-59/+59
| | | | These are not C99 but are hidden behind ifdefs and are highly unlikely to ever have non-POSIX equivalents.
* Remove HDva_(arg|copy|end|start) (#3184)Dana Robinson2023-06-284-14/+14
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* Remove dead code behind #ifdef OLD_WAY (#3163)Dana Robinson2023-06-211-37/+3
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* Many fixes to various compiler warnings (#3124)Sean McBride2023-06-1976-561/+576
| | | | | | | | | | | * Fixed various -Wmissing-variable-declarations by adding static keyword * In a few cases, renamed the variable suffix from _g to _s. * Fixed some -Wmissing-variable-declarations by using different declaration macros * Fixed various -Wconditional-uninitialized warnings by just initializing variable to zero * Fixed various -Wcomma warnings * Fixed clang -Wstrict-prototypes warnings * Fixed various -Wunused-variable warnings * Updated some casts to fix the only 3 -Wcast-qual warnings * Fixed the only -Wsometimes-uninitialized warning
* Remove HD prefix from network calls (#3142)Dana Robinson2023-06-161-5/+5
| | | HDsocket(), etc. Only affects the mirror VFD and its test code.
* Many clang -Wextra-semi-stmt fixes (#2537)Sean McBride2023-06-1688-1696/+1696
| | | | | * Adds semicolons to function-like macros * Adds a do..while(0) loop to some macros * Removes semicolons when inappropriate, especially H5E_TRY_BEGIN/END
* Revert long double checks (#3133)Dana Robinson2023-06-151-3/+112
| | | | | | | * Revert "Remove long double conversion work-arounds (#3097)" This reverts commit 1e1dac1dac58fa18f6b7788346d1ba7d3315b0f9. * Update comments to reflect newer systems
* Fix function name in comment in ros3 VFD (#3131)H. Joe Lee2023-06-151-4/+1
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* Fix spelling issues flagged by codespell (#3130)Dana Robinson2023-06-153-3/+3
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