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* (1) Add tests for VFD SWMR writerVailin Choi2018-10-221-121/+505
| | | | (2) Bug fixes
* Third batch of checkin:Vailin Choi2018-09-287-1/+2125
| | | | | | | | | | 1) Free space manager for the metadata file 2) Delayed free space release linked list 3) H5F_update_vfd_swmr_metadata_file() 3) VFD SWMR driver: read callback 4) Flushing for VFD SWMR 5) Port one concurrent test from swmr test set 6) Bug fixes and refactoring
* Merge branch 'develop' of ↵Vailin Choi2018-09-2646-1583/+1625
|\ | | | | | | | | | | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~vchoi/my_hdf5_fork into feature/vfd_swmr Conflicts: src/H5AC.c src/H5F.c src/H5Pfapl.c Resolve conflicts for H5AC.c, H5F.c and H5Pfapl.c
| * CMake changes for SKIPPED and flush testsAllen Byrne2018-09-242-13/+55
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| * Normalization with vol_integration (property lists, file drivers,Dana Robinson2018-09-211-2/+2
| | | | | | | | other misc).
| * Normalization with vol_integration (test code and H5Xtest.c)Dana Robinson2018-09-2036-1352/+1343
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| * Develop normalization with vol_integration.Dana Robinson2018-09-199-216/+225
| | | | | | | | | | Mostly peripheral things like the tools and wrappers, with just enough core library code to support that.
* | Second batch of checkin:Vailin Choi2018-09-041-36/+32
| | | | | | | | | | | | | | | | 1) Define driver for the VFD SWMR reader 2) Implement VFD SWMR open callback 3) Implement H5FD_vfd_swmr_get_tick_and_idx() 4) Load and decode metadata file header and index 4) Closing for VFD SWMR
* | Merge pull request #10 in ~VCHOI/my_hdf5_fork from develop to feature/vfd_swmrVailin Choi2018-09-048-1899/+1387
|\ \ | |/ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'c834d9f99d45e5b9752e8525fe8761ea5592bf2c': (41 commits) HDFFV-10568 fix hdf5_java library dependency Remove another extra path var Move muti-config dir setting to root process Fix one more intermediate location Use different variable Cleanup and add intermediate dir for java Java must use shared libs to allow dlopen calls Correct names Call new function Correct default API version for develop to 112. Fix typo HD prefix and whitespace Update RELEASE.txt with suggested changes Update MANIFEST file for new t_coll_md_read.c file Remove now-unused local variable Add fix for HDFFV-10501 Revert testfile FILE change change FILE path Add testfiles to data copy Same changes needed for examples as test ...
| * HD prefix and whitespaceAllen Byrne2018-08-288-1899/+1387
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* | Preliminary checkins for implementation done so far:Vailin Choi2018-08-142-1/+696
|/ | | | | | | | | | | | 1) Public routines: H5Pget/set_vfd_swmr_config 2) Public routine: H5Fvfd_swmr_end_tick 3) Initialization when opening a file with VFD SWMR writer 4) Tests in test/vfd_swmr.c for VFD SWMR 5) Fix a bug in src/H5Fint.c: when error is encountered after the root group is created Note the following: --This is WORK IN PROGRESS and will subject to change as implementation goes. --There is test failure form enc_dec_plist.c: I will fix this when changes to the property list are settled. --The branch is updated with the latest from develop as of 8/14/2018
* Fix for HDFFV-9277: update the ainfo message after removing an attribute.Vailin Choi2018-07-201-0/+94
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* Merge pull request #1143 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developLarry Knox2018-07-181-0/+2
|\ | | | | | | | | * commit '3c6654921000a8659276f1fcb32dd0ada1353558': Apply Cygwin pathches from Marco Atzeri. Commit Joe Lee's typo corrections for src/H5MF.c.
| * Merge branch 'develop' of ↵Larry Knox2018-07-1813-68/+545
| |\ | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~lrknox/hdf5_lrk into develop
| * | Apply Cygwin pathches from Marco Atzeri.Larry Knox2018-07-181-0/+2
| | | | | | | | | | | | Commit Joe Lee's typo corrections for src/H5MF.c.
* | | TRILABS-137 Convert tcheck_version script to cmake testsAllen Byrne2018-07-182-30/+17
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* | TRILAB-31 Working locallyAllen Byrne2018-07-163-26/+503
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* | Merge pull request #1128 in HDFFV/hdf5 from HDFFV-10525-typo-in-vds.c to developLarry Knox2018-07-161-1/+1
|\ \ | | | | | | | | | | | | * commit '863148d1fe0b6949708698ad9277dbdba8129e0c': fixed typo.
| * | fixed typo.Hyo-Kyung Lee2018-07-101-1/+1
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* | | Fixed HDFFV-10404Binh-Minh Ribler2018-07-139-41/+41
| |/ |/| | | | | | | | | | | | | | | Description: Applied the typo fixes from user's report. The previous pull request couldn't be merged because it was too old, and it was too complicated for me to resolve conflicts. Platform tested: Linux/64 (jelly) - very minor
* | Vailin's fix for H5open fail when file doesn't have write permissionsLarry Knox2018-07-121-1/+1
|/ | | | | for user in test_misc33(). The test file can be opened read-only because the test doesn't write to it.
* Revert "Merge pull request #1116 in HDFFV/hdf5 from ↵hdftest2018-06-244-329/+50
| | | | | | | ~HDFTEST/hdf5_hft:hdf5_1_10 to develop" This reverts commit e9f476dad47ce593f13dacb77b1cc664d1f24e7b, reversing changes made to 2ff00b1b937ebe36ac6ddf590c16a4c27fc0b053.
* Merge branch 'develop' into hdf5_1_10.syncM. Scot Breitenfeld2018-06-141-18/+24
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| * Normalization with vol_integration branch.Dana Robinson2018-06-071-18/+24
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* | Merge branch 'develop' into hdf5_1_10.syncM. Scot Breitenfeld2018-06-0431-472/+2792
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| * Fix usage of compression lib in shared testsAllen Byrne2018-06-011-1/+18
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| * Merge pull request #1043 in HDFFV/hdf5 from ↵Dana Robinson2018-05-316-9/+2179
| |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:h5do_direct_chunk_hl_to_src to develop * commit '1da9c5545c013ebc540ba3044810889d4acfa5be': Restored some unused #defines to the deprecated section of H5Dpublic.h. Added deprecated symbol wrappers for the H5DOwrite/read_chunk wrappers. Updated commenting in the H5DO compat test. Stripped out most of the duplicated functionality in the H5DO compat test. * Added H5DO compatibility functions. * Changed the offset copy to use an array on the stack. * Yanked some unused #defines. * Fixed the error tests * Moved common functionality into helper functions Normalize with trunk prior to update merge Fixed a warning. Finished move of H5DOread/write_chunk calls to H5D. First stage of moving H5DOread/write_chunk() to src/ and making them H5D calls. * Moved H5DOread/write_chunk() to H5Dio.c and renamed to H5D*. * Moved the hl/test/test_dset_opt test to test/ and renamed to direct_chunk. * Moved the hl/test/dectris_hl_perf test to tools/test/perform and renamed to direct_write_perf. * Updated autotools and CMake files.
| | * Merge branch 'develop' into h5do_direct_chunk_hl_to_srcDana Robinson2018-05-152-99/+80
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| | * | * Fixed the error testsDana Robinson2018-05-022-3/+3
| | | | | | | | | | | | | | | | * Moved common functionality into helper functions
| | * | Merge branch 'develop' into h5do_direct_chunk_hl_to_srcDana Robinson2018-04-304-212/+231
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| | * | | First stage of moving H5DOread/write_chunk() to src/ and makingDana Robinson2018-04-304-6/+2176
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | them H5D calls. * Moved H5DOread/write_chunk() to H5Dio.c and renamed to H5D*. * Moved the hl/test/test_dset_opt test to test/ and renamed to direct_chunk. * Moved the hl/test/dectris_hl_perf test to tools/test/perform and renamed to direct_write_perf. * Updated autotools and CMake files.
| * | | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Vailin Choi2018-05-313-158/+158
| |\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | * commit 'e8ece625f223032db0d26cfffafc045e4ccdf37d': Normalize with vol_integration.
| | * | | | Normalize with vol_integration.Dana Robinson2018-05-293-158/+158
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| * | | | | (1) Made the change according to the pull request feedback.Vailin Choi2018-05-311-201/+1
| | | | | | | | | | | | | | | | | | | | | | | | (2) Removed the performance test form test/th5o.c: will decide on what needs to be done to show speedup via HDFFV-10463.
| * | | | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Vailin Choi2018-05-237-292/+273
| |\ \ \ \ \ | | |/ / / / | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '2b0fb7e3f1f7da5b23d430702493ed4fb7f87166': (21 commits) HDFFV-9739 only executes H5E tests in production Remove link flag from compile command fix typo Add release note Correct attribute location HDFFV-9739 fix copy testfiles command HDFFV-9739 remove obsolete test files HDFFV-9739 dup test file for concurrent tests HDFFV-9739 Fix autotools script HDFFV-9739 Change autotools test scripts Fix typo HDFFV-9739 Update test reference Update current windows test machines HDFFV-9739 Grab err number before API call HDFFV-9739 Add release note Adjust test names for concurrent tests Fix soversion HDFFV-9739 Fix copy name HDFFV-9739 factor out tests into separate JUnit Updated the threadsafety test to use error macros instead of asserts. ...
| * | | | | Changes made based on feedback from pull request #1039.Vailin Choi2018-05-1417-254/+257
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| * | | | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Vailin Choi2018-05-144-304/+287
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| * | | | | Fix for HDFFV-10180 Performance issues with H5Oget_info.Vailin Choi2018-04-2423-309/+639
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* | | | | | Merge branch 'develop' into hdf5_1_10.syncM. Scot Breitenfeld2018-05-227-292/+273
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| * | | | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2018-05-215-270/+251
| |\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '73d7f7e7d37b869ce9c39cc8e648ef50d563fc93': Updated the threadsafety test to use error macros instead of asserts.
| | * | | | | Updated the threadsafety test to use error macros insteadDana Robinson2018-05-145-270/+251
| | | |/ / / | | |/| | | | | | | | | | | | | | | of asserts.
| * | | | | Fix MPI on Windows by adding MPI include folderAllen Byrne2018-05-092-22/+22
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* | | | | Fix for HDFFV-10469: set to latest format for virtual layout encoding.Vailin Choi2018-05-171-1/+1
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* | | | | Merge branch 'develop' into hdf5_1_10.syncM. Scot Breitenfeld2018-05-102-99/+80
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| * | | | Correct COMPILE defs usageAllen Byrne2018-05-091-1/+1
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| * | | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2018-04-302-205/+207
| |\ \ \ \ | | | |_|/ | | |/| | | | | | | | | | | | | | | | | | | | | | * commit '1f8cb03e11a46f853881f45dac18eff2dd68401e': Fix errors in Makefile.am files that cause "make check" to repeat test, even when there are no changes to source files. (Also add a ggenerated script to the list of files cleaned up on 'make distclean') Further minor cleanups Checkpoint normalization against incoming hyperslab / selection / dataspace improvements.
| * | | | TRILABS-19 remove add_defintions and use generator expressionsAllen Byrne2018-04-262-99/+80
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* | | | temporary fix for HDFFV-10469M. Scot Breitenfeld2018-05-091-1/+4
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* | | | Merge branch 'develop' into hdf5_1_10.syncM. Scot Breitenfeld2018-05-0842-5098/+4637
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| * | | Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-04-291-1/+1
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