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* Merge initial version of selection I/O feature into develop (#1367)Neil Fortner2022-03-261-1/+1
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* Update license url part2 (#333)Larry Knox2021-02-171-1/+1
| | | | | | * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING file - files not in src or test.
* Moves the lists of VOL connectors and VFDs in Autotools builds (#162)Dana Robinson2020-12-121-5/+0
| | | | | The VOL_LIST variable used in the Autotools was duplicated in many subdirectories. It's been moved to config/conclude.am to avoid duplication. VFD_LIST was also moved to conclude.am.
* Trim trailing whitespaceQuincey Koziol2020-04-201-1/+1
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* Fixed PR issues pointed out by AllenRichard Warren2019-12-061-1/+1
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* Specify the default VOL connector to use with an environment variable.Quincey Koziol2019-03-101-0/+5
| | | | | | | | This implicitly adds support for changing the VOL connector for command-line tools or any application linked with the library. Also, add 'make check-vol' support for all directories, clearing up necessary issues in testing scripts, etc.
* Added a shell script so we can run the parallel flush testDana Robinson2018-12-201-2/+10
| | | | on OpenMPI.
* Add fix for HDFFV-10501Jordan Henderson2018-08-261-1/+1
| | | | | Add test for HDFFV-10501 fix Add release note for HDFFV-10501 fix
* Add 2 parallel test files to CHECK-CLEANFILES so that if their testslrknox2018-03-151-1/+4
| | | | fail before removing them, make check-clean will remove them.
* The initial coding for the superblock read optizationRichard Warren2017-09-281-1/+1
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* Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Jordan Henderson2017-08-111-1/+1
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| * Include code fixes and additional modifications pointed out by code reviewersRichard Warren2017-07-101-1/+1
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* | Move test files to testpar directoryJordan Henderson2017-08-031-1/+1
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* Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* Final merge of page buffering branch to developQuincey Koziol2017-03-141-1/+1
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* [svn-r27162] fix for HDFFV-9412:Mohamad Chaarawi2015-06-081-2/+3
| | | | | | | - Check for mpi is_initialized and is_finalized before making MPI calls in init/terminate of HDF5. - Add a test to make sure we can make serial HDF5 calls from rank 0 after MPI_Finalize is called. tested with h5committest
* [svn-r26279] re-commit 26260 that Dana moved out fixing the versioning of ↵Mohamad Chaarawi2015-02-231-2/+3
| | | | functions to work with v16 default API.
* [svn-r26271] Reverse merge of r26260 which was causing daily test failures.Dana Robinson2015-02-221-3/+2
| | | | Tested on: jam w/ parallel and fortran
* [svn-r26260] - add an attribute callback to call H5_term_library when ↵Mohamad Chaarawi2015-02-201-2/+3
| | | | | | | | | MPI_COMM_SELF is destroyed. - add tests for above. - this is a fix for HDFFV-883. tested h5committest
* [svn-r24932] HDFFV-8290: Remove unnecessary $(srcdir) and use AM_CPPFLAGS ↵Allen Byrne2014-03-311-1/+1
| | | | | | instead of INCLUDES. Update automake to 1.14.1 h5committest
* [svn-r24864] Description:Quincey Koziol2014-03-211-5/+2
| | | | | | | | | | | | | | | | | | Remove all traces of MPI-POSIX VFD and GPFS detection/code. Remove remaining traces of stream VFD. Remove testpar/t_posix_compliant test (it's not actually verifying anything). Clean up H5D__mpio_opt_possible() further. Moved environment variable that disables MPI collective operations into MPI-IO VFD (instead of it being in src/H5S.c). A few other small code cleanups. Tested on: Mac OSX/64 10.9.2 (amazon) w/parallel & serial
* [svn-r22807] Description:Quincey Koziol2012-09-251-1/+2
| | | | | | | | | | | | | | | | | | | | | Add encode/decode API routines for property lists: H5Pencode/H5Pdecode. Tested on: FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (ostrich) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-ia64 2.6 (ember) w/Intel compilers, w/parallel, C++ & FORTRAN, in production mode Mac OS X/32 10.7.3 (amazon) in debug mode Mac OS X/32 10.7.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode Mac OS X/32 10.7.3 (amazon) w/parallel, in debug mode
* [svn-r22219] Description:Quincey Koziol2012-03-311-2/+2
| | | | | | | | Merge "file image" changes from feature branch back to trunk. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug (h5committest upcoming)
* [svn-r19941] Purpose:Albert Cheng2011-01-121-3/+2
| | | | | | | | | | | | | | | | | | | | | | | Moved the two shape same tests from testphdf5 to a separated executables, named t_shapesame. The shape same tests runs too long for testphdf5. In a separated executalbe, it will be easier to separate any errors in testphdf5 sub-tests from the shape same tests. t_shapesame.c: Contains the shape same tests (cloned from t_rank_projection.c) plus a duplicate of "testphdf5.c" for now. After verifying it is correct, more cleanup is needed. testphdf5.c: Removed the two shape same tests (chsssdrpio & cbhsssdrpio). Makefile.am: Makefile.in: Added t_shapesame as a new test executable. Removed t_rank_projections.c from part of testphdf5. testph5.sh.in: Temporary added the "t_shapesame -p" test for testing shape same tests with MPIO-Posix VFD. Tested: h5committested, plus serial jam.
* [svn-r19092] Description:Quincey Koziol2010-07-191-1/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring "shape same" changes from LBL branch to trunk. These changes allow shapes that are the same, but projected into dataspaces with different ranks to be detected correctly, and also contains code to project a dataspace into greater/lesser number of dimensions, so the I/O can proceed in a faster way. These changes also contain several bug fixes and _lots_ of code cleanups to the MPI datatype creation code. Many other misc. code cleanup are included as well... Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17578] Simple improvement to clean up go during "make check-clean"Albert Cheng2009-10-011-2/+3
| | | | | | and removed the redundant cleaning of Makefile. Tested: jam parallel.
* [svn-r15808] Some test produced files were not cleaned by "make clean".Albert Cheng2008-10-081-1/+1
| | | | | | Added them to the clean list. Tested: kagiso, serial and parallel.
* [svn-r13780] Add t_filter_read.c to testphdf5.Christian Chilan2007-05-221-1/+1
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* [svn-r13264] Updated Makefile.am with new THG copyright notice.Albert Cheng2007-02-071-2/+3
| | | | Ran reconfigure to generate the Makefile.in files.
* [svn-r12697] Purpose: New FeatureLeon Arber2006-10-011-1/+1
| | | | | | | | Description: Preliminary test of H5Fflush to verify that it still works when using MPIO collective mode. Platforms: Linux (heping)
* [svn-r12431] Purpose:James Laird2006-06-211-1/+1
| | | | | | | | | | | | | | Configuration feature Description: 'make install' now tests both static and shared libraries if both are installed. Solution: Previously, shared libraries were only tested when static libraries were not installed. Also cleaned up line in commence.am that was including HL library in all Makefiles. Platforms tested: mir (Makefile change only)
* [svn-r12292] Purpose:Quincey Koziol2006-04-201-1/+1
| | | | | | | | | | | | | Code maintenance Description: Remove flexible parallel code Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (heping) Solaris 2.9 (shanti) Linux 2.4/64 (mir)
* [svn-r12229] Purpose:Pedro Vicente Nunes2006-04-121-1/+1
| | | | | | | | | | | | | | | | | | | | | new feature Description: 1) separated the HL library into "public" and "private" header files, with the same caracteristics as the basic library 2) added the public headers to hdf5.h (with a conditional include macro, defined in configure.in) 3) added the path to HL in all Makefile.am 's , because of the inclusion in hdf5.h Solution: Platforms tested: linux 32, 64 AIX solaris with fortran and c++ (one packet table example fails) Misc. update:
* [svn-r11992] Purpose:Albert Cheng2006-03-011-1/+1
| | | | | | | | | | | | Improvement. Description: The t_cache takes a long long time to run and it tests HDF5 calls. Move it to the back and let more basic tests to run first so that basic features are tested first. Platforms tested: Tested in heping with pp.
* [svn-r11897] Purpose:John Mainzer2006-01-271-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | 1) Add parallel test for metadata cache 2) Split serial test for metadata cache into two parts 3) Fix bug in which cache was flushed needlessly when the cache wasn't full. 4) Performance improvements 5) Update API for parallel cache coherency bug fix. Description: See above. Solution: See above. Platforms tested: h5committest Misc. update:
* [svn-r11776] Purpose:Leon Arber2005-12-081-1/+1
| | | | | | | | | | | | | | Added t_posix_compliant to the rest of the build and patched up minor compile bugs/warnings encountered on other platforms. Description: It seems that <getopt.h> needs to be included to get the file to build, even though the man page seems to indicate that <unistd.h> should be sufficient. Solution: Platforms tested: copper, colonelk, sol
* [svn-r11411] Purpose:James Laird2005-09-131-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug fix Description: Building with --disable-static seems to have been broken on several platforms. Fixed this. Configure will now disable shared libraries automatically when using pgf90 or when building on Cygwin. Solution: To avoid errors when using shared libraries with pgf90 (which I had not realized were compiler-specific), I had manually set convenience libraries to use the -static linking flag. Apparently, this is not necessary, and caused these libraries to be created as empty archives when --disable-static was used. Also, some libraries were including other libraries, which was not necessary. I also fixed code in configure.in to correctly detect whether shared or static libraries are enabled, and moved code that disables shared libraries to before libtool is created (rather than editing libtool after the fact). Despite repeated warnings that only one shared library can be linked at a time, I have yet to have shared libraries break the linking of tests on any system. We'll see if the Daily Tests turn up anything. Platforms tested: mir (fortran, C++), sleipnir (C++), modi4 (fortran, C++, parallel), sol (fortran, C++), cygwin
* [svn-r11323] Purpose:Albert Cheng2005-08-311-2/+0
| | | | | | | | | | | | | | | | tidy up. Description: MPE option created *.clog file whenever it is executed in MPI. The cleanup of *.clog files were done in individual Makefile.in. Often, it is forgotten. Solution: Moved the cleaning of *.clog files to CHECK_CLEANFILES in commence.am so that it is applied whenever check-clean is called. Platforms tested: heping pp using MPE.
* [svn-r11312] Purpose:Albert Cheng2005-08-301-1/+1
| | | | | | | | | | | | | | | | | | Bug #281 Description: A dataset created in serial mode with H5D_ALLOC_TIME_INCR allocation setting was not extendible, either explicitly by H5Dextend or implicitly by writing to unallocated chunks. This was because parallel mode expects the allocation mode be H5D_ALLOC_TIME_INCR only. Solution: Modified library to allocate more space when needed or directed if the file is opened by parallel mode, independent of what the dataset allocation mode is. Platforms tested: Heping pp.
* [svn-r11214] Purpose:Albert Cheng2005-08-081-1/+1
| | | | | | | | bug fix Description: Previous commit contained an extra bin (t_chunk_alloc) that is not ready yet. It was a mistake. Removed it.
* [svn-r11208] Purpose:Albert Cheng2005-08-081-1/+1
| | | | | | | | | | | | | | | | | | | Bug fix and code minor cleanup. Description: The attempt to redirect stderr together to the log files were done in the wrong order such that stderr output goes to where stdout WAS. Fixed that. Code minor cleanup--use shell variables to hold the name of the log file and the test instead of generating them repeatedly. This makes easier code reading, less crowded and avoid typos. Only conclude.in is changed. The Makefile.in changes are all derived from automake. Platforms tested: h5committested.
* [svn-r11185] Purpose:James Laird2005-08-021-1/+2
| | | | | | | | | | | | | | | Makefile feature Description: 'make check-clean' now cleans *.h5 files created by tests as well as .log and .chkexe files. Solution: check-clean is now a separate target in its own right, which cleans less than mostlyclean (check-clean < mostlyclean < clean < distclean). Platforms tested: mir, heping, modi4 (serial and parallel)
* [svn-r11008] Purpose:James Laird2005-06-301-1/+1
| | | | | | | | | | | | | | | | | | | | | | Feature: tests now use parallel make and only run once Description: When make is invoked in parallel (using the -j option), several tests will now be run simultaneously. This should speed up testing on a number of systems. When a test passes, it creates a foo.chkexe or foo.chksh file, which prevents the test from running again unless the test or library changes. Solution: Most of the changes live in config/conclude.am. Added *.chkexe and *.chksh files to the list of files to be cleaned at "make mostlyclean" time. Parallel tests still run one at a time, but use the same make instructions as serial tests. Platforms tested: mir, eirene, sleipnir, pommier, copper, modi4 (some errors occurred, probably due to the test being run before updating hdf5. Will re-run tests after checkin.)
* [svn-r10840] Purpose:James Laird2005-06-021-1/+1
| | | | | | | | | | | Added check-s and check-p targets. Description: Added check-s and check-p targets to 1.7 branch to match changes to 1.6 branch. Now parallel and serial tests can be run separately. Platforms tested: mir, modi4, copper
* [svn-r9993] Purpose:James Laird2005-02-111-1/+1
| | | | | | | | | | | | | | | | | | | | Bug fix Description: Arabica exhibited strange errors when linker found wrong versions of header files. This happened because include directories were given to linker in the wrong order. Solution: Move include directories from AM_CFLAGS variable to INCLUDES variable to put them before CPPFLAGS variable. Trust me, it works. This bug may also have contributed to strange errors on other platforms (kelgia?). Platforms tested: copper, sleipnir, arabica. (h5dump broke while building on arabica, but this happened in a clean checkout, too).
* [svn-r9902] Purpose:James Laird2005-02-011-0/+46
Configuration feature Description: HDF5 now uses automake to generate Makefiles Solution: Makefile.in files are now generated from Makefile.am files. To reconfigure (after chaning a Makefile.am or configure.in): /bin/sh bin/reconfigure.sh Platforms tested: Many
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