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* [svn-r10570] Purpose: MaintenanceElena Pourmal2005-04-071-4/+0
| | | | | | | | | | | Description: Removed support for SRB driver Solution: Removed or modified appropriate files; ran reconfigure to regenerate Makefile.in and configure files. Platforms tested: heping and shanti Misc. update: ran bin/chkmanifest on heping
* [svn-r10534] Purpose:James Laird2005-04-041-0/+1
| | | | | | | | | | | | | | | | | | | | Configuration feature Description: Different Fortran compilers mangle function names in different ways (upper case, lower case, adding underscores). To link between Fortran and C functions, we need to know what a given function's name is under a given compiler. Solution: Use autoconf's FC_WRAPPERS check to determine the Fortran naming scheme and define the FC_FUNC_ macro to name our functions (in H5f90proto.h). Removed references to our old FNAME macro, as well as flags that indicated whether function names were upper or lower case. Platforms tested: mir, pommier, modi4, copper, more
* [svn-r10517] Purpose:James Laird2005-03-311-6/+15
| | | | | | | | | | | | | | | | Bug fix Description: On some machines, $RUNSERIAL variable needs to be used to run tests. Set $RUNTESTS (which is used for non-parallel tests) to be $RUNSERIAL in configure.am. Also, since I was updating all Makefiles.in anyway, I updated commence.am to point to autotools installs in AFS instead of those on heping. Platforms tested: mir, sleipnir, modi4, copper
* [svn-r10511] James Laird2005-03-301-1/+6
| | | | | | | | | | | | | Purpose: "Bug fix" Description: Hardcoded Makefiles to use /bin/sh instead of letting configure detect shell automatically. This is what v1.6 does, and avoids problems on janus. Platforms tested: sleipnir, copper, modi4, mir
* [svn-r10475] Purpose:James Laird2005-03-291-0/+2
| | | | | | | | | | | | | | | | | Feature - conditional compilation Description: SRB file driver and tests are now compiled only when SRB is enabled (using --with-srb during configure). Solution: Added an automake conditional in configure.in, altered Makefiles.am in src and test directories to depend on that conditional. This should make a nice example for posterity to add conditionally compiled sources. Platforms tested: heping (only configure change)
* [svn-r10459] James Laird2005-03-281-0/+1
| | | | | | | | | | | | | | | | | Purpose: Added C++ wrapper for Packet Table API. Description: Added macro for high-level C++ library (LIBH5CPP_HL), which changes every Makefile.in. Added directories for high-level C++ library (though currently only Packet Table API is supported). Added both C++ source and tests. Platforms tested: sleipnir, mir, modi4 Misc. update:
* [svn-r10158] Purpose:James Laird2005-03-071-153/+250
| | | | | | | | | | | | | | | | | | | | | | Automake version upgrade Description: Upgraded automake version from 1.6.2 to 1.9.5. Changed bin/reconfigure script to use automake 1.9.5. Changed configure.in and Makefiles to use new FCFLAGS and FC variables instead of FFLAGS and F9X. Automake and configure should now do the lion's share of the work supporting Fortran 9X; macros in acsite.m4 are now mostly unused (will be cleaned later). Altered how configure handles pmake; now root-level Makefile.in is processed by bin/reconfigure to have a .MAKEFLAGS target, since automake no longer allows us to define unused variables. Configure now always checks for C++ compiler even if it is not used, since automake thinks this is the Right Thing To Do and will break otherwise. Platforms tested: Sol, copper, heping, mir, sleipnir, eirene, pommier, kelgia, modi4.
* [svn-r10123] Purpose:Albert Cheng2005-03-021-3/+0
| | | | | | | | | | | | | | | | | | | | | | | Removed GASS configuration and software packages associated with it. The following software are no longer configurable. checking for main in -lcrypto... yes checking for SSL_get_version in -lssl... yes checking globus_common.h usability... yes checking globus_common.h presence... yes checking for globus_common.h... yes checking for globus_module_activate in -lglobus_common... yes checking for main in -lglobus_gass_cache... yes checking for main in -lglobus_gaa... yes checking for main in -lglobus_gss... yes checking for main in -lglobus_gss_assist... yes checking for main in -lglobus_io... yes checking for main in -lglobus_gass_transfer_assist... yes checking for main in -lglobus_gass_transfer... yes checking for globus_gass_open in -lglobus_gass_file... yes Platforms tested: h5committested (but copper was down.) tested in modi4 too.
* [svn-r10066] Purpose:James Laird2005-02-231-0/+4
| | | | | | | | | | Libtool upgrade Description: HDF5 was using libtool 1.4.2. Upgraded to libtool 1.5.14. Platforms tested: verbena, heping, pommier, copper, modi4, arabica
* [svn-r10027] Purpose:Xiaowen Wu2005-02-171-0/+1
| | | | | | | | | | | | | | New feature. Description: Add the scaleoffset internal library filter. Solution: Platforms tested: heping, copper, arabica Misc. update:
* [svn-r10016] James Laird2005-02-161-1/+0
| | | | | | | | | | | | | | | | | | | Purpose: Bug fix Description: modi4 dies during build with strange errors. The root cause of these is a two-year-old hack in HDF5's libtool script that only takes effect on IRIX. Solution: Edited the libtool hack (by editing ltmain.sh) to correct a bug in the hack. Also made sure that compiler-specific DEFAULT_LIBS are used when linking. Platforms tested: sleipnir, copper, modi4, sol
* [svn-r9993] Purpose:James Laird2005-02-111-1/+1
| | | | | | | | | | | | | | | | | | | | Bug fix Description: Arabica exhibited strange errors when linker found wrong versions of header files. This happened because include directories were given to linker in the wrong order. Solution: Move include directories from AM_CFLAGS variable to INCLUDES variable to put them before CPPFLAGS variable. Trust me, it works. This bug may also have contributed to strange errors on other platforms (kelgia?). Platforms tested: copper, sleipnir, arabica. (h5dump broke while building on arabica, but this happened in a clean checkout, too).
* [svn-r9988] Purpose:James Laird2005-02-111-15/+4
| | | | | | | | | | | | | | | | | | | | Bug fix Description: pmake (on modi4, for instance) complains about undefined variables if it is run without the -V flag, which turns those errors to warnings. Solution: Added test to configure.in to see if $MAKE will allow Makefiles with undefined variables. If not, sets -V flag in AM_MAKEFLAGS. Ensured that all custom make targets use AM_MAKEFLAGS. Also defined all variables that caused errors in top-level Makefile.am. This means that pmake can be used to build hdf5 *from the top level only*. To run make from a subdirectory, still need to use -V flag (or use make or gmake). Platforms tested: modi4, heping, copper, sleipnir
* [svn-r9930] James Laird2005-02-031-1/+1
| | | | | | | | | | | | | | | | | | Purpose: Bug fix Description: Parallel builds were breaking in tools/lib Solution: talign didn't realize it depended on libh5tools.la because its dependencies listed the full path (../../tools/lib/libh5tools.la). Changed this, and made similar changes in a couple of other directories. This checkin should also add the --foreign flag to every Makefile.in Platforms tested: sleipnir (minor change)
* [svn-r9928] Purpose:Quincey Koziol2005-02-031-1/+1
| | | | | | | | | | | | | New feature Description: Add basic code for new B-tree implementation. They don't do much yet, aren't hooked up to anything yet and the format may change, but I'd like to start getting them into the daily tests. Platforms tested: FreeBSD 4.11 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r9920] Purpose:James Laird2005-02-021-2/+3
| | | | | | | | | | | | | | | | | | | Bug fix Description: Found the permanant fix to automake/CVS dependency problem Solution: Added AM_MAINTAINER_MODE macro to configure.in. Now automake will never try to regenerate Makefiles, Makefiles.in, configure, H5config.h, etc. when they are out of date, nor will it print any warnings. Developers should be very very careful to use reconfigure script, and can add --enable-maintainer-mode flag to configure on heping to regenerate these files correctly. Platforms tested: heping sleipnir copper
* [svn-r9915] Purpose:James Laird2005-02-021-6/+6
| | | | | | | | | | | | | | | Bug fix Description: Configuration files' timestamps were incorrect. Solution: Update Makefiles.in. Also added correct paths to autotools on heping, so heping build should be able to re-generate configuration files even if they are still broken. Platforms tested: sleipnir
* [svn-r9912] Purpose:James Laird2005-02-011-87/+8
| | | | | | | | | | | | | | | | | Bug fix Description: Dependencies between configure files (aclocal, configure.in, configure, Makefiles.am and .in) are still causing Makefiles to try to run autotools during build. Solution: Committed all Makefiles.in to update their timestamps. As a temporary measure, forcibly prevented automake from running autotools during build by redefining the variables it uses. Platforms tested: sleipnir (No changes to Makefile content)
* [svn-r9907] Purpose:James Laird2005-02-011-0/+1
| | | | | | | | | | | | | Bug fix Description: Different compilers use different flags to include Fortran module files Solution: Changed boilerplate to use configure variable rather than hardcoded -M flag. Platforms tested: sleipnir, sol, copper
* [svn-r9902] Purpose:James Laird2005-02-011-66/+709
| | | | | | | | | | | | | | | Configuration feature Description: HDF5 now uses automake to generate Makefiles Solution: Makefile.in files are now generated from Makefile.am files. To reconfigure (after chaning a Makefile.am or configure.in): /bin/sh bin/reconfigure.sh Platforms tested: Many
* [svn-r9520] Purpose:MuQun Yang2004-11-111-1/+1
| | | | | | | | | | | | | | | | | | Adding general MPI derived datatype testing code. Description: The testing code will not be tested. The purpose of checking in is for better debugging later. HDF5 routine or daily test should not be aware of this. Solution: Platforms tested: Copper(AIX 5.1), Heping(Linux 2.4 + MPICH 1.2.6). Misc. update:
* [svn-r8907] Purpose:MuQun Yang2004-07-201-1/+1
| | | | | | | | | | | | | | | | | | | | To add collective chunk IO tests. Description: three tests are added. 1. Only one hyperslab for each process, and this hyperslab is fit in exactly one chunk. 2. non-contiguous hyperslabs in each process, these hyperslabs are fit in one chunk. 3. Single hyperslab for each process, smaller chunk is assigned. Number of chunks for every process is equal. Solution: the dataset size is set to be very small, will enlarge later. Platforms tested: AIX 5.1(copper) Misc. update:
* [svn-r8161] Purpose:Albert Cheng2004-02-071-2/+2
| | | | | | | | | | | | | | | | Bug fix Description: make check without doing make first would fail to build testphdf5. Solution: Put the testphdf5 back in the target of TEST_PROG_PP and removed the "testphdf" without any parameter from testph5.sh. Platforms tested: copper parallel. This is not relevant to non-parallel cases. Misc. update:
* [svn-r7396] Purpose:Albert Cheng2003-08-241-1/+4
| | | | | | | | | | | | | | | | Bug fix Description: Temporary files were not cleaned out because the definiton of temporary files had not been updated. Solution: Updated it. Platforms tested: Tested by hand in Copper while i was testing the MPE change. Misc. update:
* [svn-r7361] Description:Albert Cheng2003-08-141-1/+2
| | | | | | | | | | | | Updated the copyright notice--mostly by rearranging some text to make them consistent. Solution: Platforms tested: "h5committested"--sol is down, so, no SUn test. Misc. update:
* [svn-r6718] Purpose:Albert Cheng2003-04-201-1/+1
| | | | | | | | | | | | | | | | | | | | bug fix Description: The fphdf5.o and similar files are not included in the make clean target. So, if the same directory is used again for a different build, the left behind file could cause a problem (e.g., if the second build is for a different binary format.) Solution: Added fphdf5.c to the TEST_SRC list which indirect form the clean target list. Platforms tested: Did not run h5committest tests because they don't verify this failure. I tested the fix in modi4 pp to verify all files are cleaned. Misc. update:
* [svn-r6709] Purpose:Albert Cheng2003-04-181-3/+5
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug fixes/API changes Description: Previously, the Communicator and Info object arguments supplied to H5Pset_fapl_mpio() are stored in the property with its handle values. This meant changes to the communicator or the Info object after calling H5Pset_fapl_mpio would affect the how the property list function. This was also the case when H5Fopen/create operated. They just stored the handle value. This is not according to the MPI-2 defined behavior of how Info objects should be handled. (MPI-2 defines Info objects must be parsed when called.) The old design was trying to avoid numerous duplicates of the same information (e.g., every property object holds one version, every file opened holds another version, when all of them are referring to the same original version.) Nevertheless it is safer to implement it according to MPI-2 definition. Futhermore, the library often needs to do message passing using the supplied communicator. Using the same communicator as the application version may result in some messages mix up. Solution: H5Pset_fapl_mpio now stores a duplicate of each of the communicator and Info object. H5Pget_fapl_mpio returns a duplicate of its stored communicator and Info object. It is now the responsibility of the applications to free those objects when done. H5Fopen/create also stores a duplicate of the communicator and Info object supplied by the File Access Property list. H5Fclose frees those duplicates. There are a few more internal VFL call back functions that they follow this "make duplicates" requirement. Platforms tested: "h5committested". What other platforms/configurations were tested? Eirene (mpicc), sol(mpicc), copper(parallel) Misc. update: Need to update MANIFEST for the added t_ph5basic.c which tests the correctness of duplicated communicator and INFO object.
* [svn-r6539] Purpose:Bill Wendling2003-03-311-2/+11
| | | | | | | | | | | | Update Description: Updated (and in some cases added) the copyright statement. Platforms tested: Linux (Comment changes...only tested if they compile) Misc. update:
* [svn-r5815] Purpose:Quincey Koziol2002-07-191-2/+2
| | | | | | | | | | | | | | | | | Bug fix Description: t_mpi test program was not being run with the RUNPARALLEL command Solution: Put the t_mpi program into the TEST_PROGS_PARA macro instead of the TEST_PROGS macro Hopefully this'll fix the daily test problems on arabica, but I can't test it because I can't get mpirun to work correctly for me. Platforms tested: IRIX64 6.5 (modi4) w/parallel
* [svn-r5795] Purpose:Quincey Koziol2002-07-151-3/+8
| | | | | | | | | | | New feature Description: Changed parallel I/O tests to use test script instead of just running testphdf5 executable. This allows the MPI-posix driver to be tested easily. Platforms tested: FreeBSD 4.6 (sleipnir) w/parallel and IRIX64 6.5 (modi4) w/parallel
* [svn-r4362] Purpose:Albert Cheng2001-08-161-6/+0
| | | | | | | | cleanup Description: perf.c and mpi-perf.c have been moved to perform/. Platforms tested: eirene (parallel)
* [svn-r3882] Purpose:Albert Cheng2001-05-011-0/+6
| | | | | | | | | | Feature Description: Show simple performance of the MPIO and the HDF5-IO. The mpi-perf.c is contributed by Robert Ross of ANL. The perf.c is derived from mpi-perf.c Platforms tested: Modi4 (O2K, parallel)
* [svn-r3304] Purpose:Quincey Koziol2001-01-181-1/+1
| | | | | | | | Code update Description: Remove ragged array code & tests from library before release. Platforms tested: FreeBSD 4.2 (hawkwind)
* [svn-r2710] Purpose:Albert Cheng2000-10-201-5/+11
| | | | | | | | | | | | | | Features, kind of. Description: Separated the MPI features test into its own independent program so that it can be tested on its own without too much HDF5 stuff involved. Added automatic removal of temporary test files after the tests completed. Reduced the size of the dataset dimensions to avoid tripping the SGI MPI problems of running out of internal mpi type entries. Platforms tested: O2K -64
* [svn-r1947] Changed the test files prefix to use the h5_fixname() in ↵Albert Cheng2000-01-261-1/+1
| | | | | | | | | | | | test/libh5test.a. Makefile.in: Added test/ as one of the -I directories to search for header files. Needed because <h5test.h> is used. t_file.c t_mpi.c testphdf5.c testphdf5.h: Added FILENAME to meet the assumption in h5test.h. (May use CLEANUP in the future.) Moved the prefix setting to the h5_fixname().
* [svn-r1883] Added libh5test.a links so that parallel tests may make use of ↵Albert Cheng1999-12-171-2/+3
| | | | | | routines in the other test library.
* [svn-r1873] added new test for multiple dataset writes to parallel testsChee-Wai Lee1999-12-101-1/+1
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* [svn-r1802] Changes since 19991019Robb Matzke1999-11-011-2/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./MANIFEST ./configure.in ./configure [REGENERATED] Added more checking for `make' features. ./Makefile.in ./doc/Makefile.in ./doc/html/Makefile.in ./doc/html/Tutor/Makefile.in ./examples/Makefile.in ./pablo/Makefile.in ./src/Makefile.in ./test/Makefile.in ./testpar/Makefile.in ./tools/Makefile.in ./config/commence.in ./config/conclude.in ./config/depend.in [REMOVED] ./config/depend1.in [NEW] ./config/depend2.in [NEW] ./config/depend3.in [NEW] ./config/depend4.in [NEW] ./config/dependN.in [NEW] The directory search stuff was moved into commence.in, thereby shortening the Makefile.in prologues. ./doc/html/Dependencies [NEW] ./doc/html/Tutor/Dependencies [NEW] ./examples/Dependencies [NEW] ./src/Dependencies [NEW] ./test/Dependencies [NEW] ./testpar/Dependencies [NEW] ./tools/Dependencies [NEW] The `.distdep' files were all renamed to `Dependencies' to make them more obvious. They are required (but may be empty) in every directory that has a Makefile.in that ends with @CONCLUDE@ (you'll get an obvious error from make if you forgot to create one). ./bin/trace ./src/H5.c Added H5E_major_t and H5E_minor_t although tracing only prints the integer value. ./src/H5E.c ./src/H5Epublic.h Added tracing information. ./src/H5FDcore.c ./src/H5FDfamily.c ./src/H5FDgass.c ./src/H5FDmpio.c ./src/H5FDsec2.c ./src/H5FDstdio.c Fixed places where FUNC_LEAVE() evaluated it's argument more than once. Added tracing information. Wrapped long lines. ./config/gnu-flags Fixed a syntax error when we don't have a gnu compiler.
* [svn-r1515] Changes since 19990715Robb Matzke1999-07-191-13/+14
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./Makefile.in [1.3] ./examples/Makefile.in [1.3] ./pablo/Makefile.in [1.3] ./src/Makefile.in [1.3] ./test/Makefile.in [1.3] ./testpar/Makefile.in [1.3] ./tools/Makefile.in [1.3] ./config/commence.in [1.3] ./config/conclude.in [1.3] ./config/depend.in [1.3] Added a `.PATH' target for Irix pmake which is identical to the VPATH used by most other `make' programs. Irix 6.5 (or 6.4?) and later `make' ignores VPATH. Started all beginning-of-line comments with `##' instead of just `#' because Irix `pmake' barfs on things like the following because it sees the `# if' as a directive: # make will barf on the following line # if running Irix pmake ./config/commence.in [1.3] Added empty definitions for optional `make' macros because Irix pmake complains if it sees a macro which has never been defined. The main body of the Makefiles can redefine these macros to whatever they need.
* [svn-r1398] Purpose:Albert Cheng1999-06-301-1/+2
| | | | | | | | | | | | | | | | new feature Makefile.in: Added the dependence of *.c on the testphdf5.h t_dset.c: testphdf5.c: testphdf5.h: testphdf5 now takes optional arguements for dataset dimension sizes. That allows testing with different dimension sizes without recompiling the whole thing. Platform tested: O2K
* [svn-r1217] Changes since 19990426Robb Matzke1999-04-261-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./config/commence.in ./examples/Makefile.in ./test/Makefile.in ./testpar/Makefile.in ./tools/Makefile.in Fixed some dependency problems in Makefiles. If the library version is updated then everything gets recompiled. ./src/H5G.c ./src/H5R.c Failure return value for object type functions is now H5G_UNKNOWN as documented. ./src/H5Shyper.c ./src/H5Spoint.c Fixed an unused argument warning. ./tools/h5debug.c Fixed a call to H5F_block_read() since the 4th argument is different now. ./tools/h5ls.c Added a space between the object name and class to make the output readable when the object name is longer than 24 characters. C
* [svn-r1151] Changes since 19990318Robb Matzke1999-03-191-2/+5
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./Makefile.in ./configure.in ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] ./config/commence.in ./config/conclude.in ./config/dec-osf4.x ./config/depend.in ./config/freebsd ./config/linux-gnu ./config/linux-gnulibc1 ./config/linux-gnulibc2 ./config/solaris2.x ./examples/Makefile.in ./src/Makefile.in ./test/Makefile.in ./testpar/Makefile.in ./tools/Makefile.in ./tools/testh5dump.sh Changes that allow hdf5 to be configured and compiled in a directory other than the source directory. This is especially useful if you want to concurrently compile with different compilers and/or compile flags, or if the hdf5 source is on read-only media like a CDROM. The changes were surprisingly easy ;-) Here's what you can do now... $ mkdir /tmp/build1 # or something $ cd /tmp/build1 $ /cdrom/hdf5/configure # where ever the source is $ make Paul, you'll have to change the testh5toh4 script similar to the way I changed testh5dump.sh. I started working on it but then gave up because of a number of problems: (1) I had to comment out all the tests that let h5toh4 choose the output file name because it always tried to put the output file in the same directory as the input file, (2) if path names are used during the h4 dump then they interfere with the diff. The test works fine when run in the source directory, but try this instead: $ gunzip <hdf5-1.1.67.tar.gz |tar xf - $ chmod -R ugo-w hdf5-1.1.67 $ mkdir build $ cd build $ ../hdf5-1.1.67/configure $ make check Dan, I didn't modify the pablo/Makefile.in because I have no way to test it. I think all you need to do is add a couple lines before the @COMMENCE@ line and add a couple search directories for header files. Anyway, it seems like almost an exact duplicate of the src/Makefile.in, so it shouldn't be a problem... ./Makefile.in Removes a few more temporary files during make clean and distclean. ./configure.in I fixed the creation of the time-stamp files so that the initial make doesn't have to regenerated all the makefiles (only GNU make users will see any change). ./src/H5R.c Changed a return type from `intn' to `int' for an API function. ./src/H5detect.c Added the volatile qualifier to a couple more variables. ./tools/h5tools.c Fixed a compiler warning about an unused local. ./tools/h5toh4.c Initialized `optind' to 1 because it's zero on my system. It should always be one on a unix system. ./tools/testh5toh4 Redirected "broken pipe" messages to /dev/null so outut is formatted correctly.
* [svn-r1149] ./configure.inRobb Matzke1999-03-181-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] ./src/H5private.h Temporarily commented out the code that tries to link a simple MPI-IO application because I'm not sure how to pass $LDFLAGS and $LIBS to the compiler. Removed the `--enable-parallel=ibm' switch because the library we link with is either -lmpcc or -lmpcc_r but not both. The only way to tell is to see what compiler was specified (mpcc or mpcc_r) but if that compiler is specified then we don't need any libraries (the compiler script supplies them). That leaves just two choices: the user must use a compiler script: CC=mpcc ./configure or the user must state which library is desired: LDFLAGS='-lmpcc' ./configure --enable-parallel Checks for <setjmp.h>, longjmp(), and signal(). We don't check for setjmp() because it could be a macro (in fact, Posix requires it to be a macro) and if longjmp() is present then setjmp() is probably present too ;-) ./src/H5detect.c The alignment detection loop uses SIGBUS and setjmp/longjmp instead of fork/wait in order to get around bugs with forking in conjunction with mpich. This hasn't been tested on the SP-2 yet but it does work on the DEC Alpha. ./test/Makefile.in ./testpar/Makefile.in ./tools/Makefile.in Changed the order that libraries are linked so -lhdf5 is always before $LDFLAGS.
* [svn-r1115] Changes since 19990302Robb Matzke1999-03-031-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./INSTALL ./configure.in ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] Improvements for parallel library. If you have a properly working mpicc you should be able to just say: $ CC=mpicc ./configure and you will see checking for mpirun... /usr/local/mpi/bin/mpirun checking for parallel support files... skipped checking how to run on one processor... /usr/local/mpi/bin/mpirun -np 1 checking how to run in parallel... /usr/local/mpi/bin/mpirun -np $$NPROCS To quote from the INSTALL file.... *** Parallel vs. serial library The HDF5 library can be configured to use MPI and MPI-IO for parallelizm on a distributed multi-processor system. The easy way to do this is to have a properly installed parallel compiler (e.g., MPICH's mpicc or IBM's mpcc) and supply that executable as the value of the CC environment variable: [NOTE: mpcc is not tested yet] $ CC=mpcc ./configure $ CC=/usr/local/mpi/bin/mpicc ./configure If no such wrapper script is available then you must specify your normal C compiler along with the distribution of MPI/MPI-IO which is to be used (values other than `mpich' will be added at a later date): $ ./configure --enable-parallel=mpich If the MPI/MPI-IO include files and/or libraries cannot be found by the compiler then their directories must be given as arguments to CPPFLAGS and/or LDFLAGS: $ CPPFLAGS=-I/usr/local/mpi/include \ LDFLAGS=-L/usr/local/mpi/lib/LINUX/ch_p4 \ ./configure --enable-parallel=mpich If a parallel library is being built then configure attempts to determine how to run a parallel application on one processor and on many processors. If the compiler is mpicc and the user hasn't specified values for RUNSERIAL and RUNPARALLEL then configure chooses `mpirun' from the same directory as `mpicc': RUNSERIAL: /usr/local/mpi/bin/mpirun -np 1 RUNPARALLEL: /usr/local/mpi/bin/mpirun -np $${NPROCS:=2} The `$${NPROCS:=2}' will be substituted with the value of the NPROCS environment variable at the time `make check' is run (or the value 2). ./testpar/Makefile.in Saying `make check' (or `make test') will run the tests on two processors by default. If you define NPROCS then that many processors are used instead: $ NPROCS=4 make check ./configure.in Fixed (hopefully) bugs with detecting whether __attribute__ and __FUNCTION__ are special keywords for the compiler. ./Makefile.in Saying `make install' from the top level directory shows instructions for using shared libraries. ./config/commence.in ./src/Makefile.in ./test/Makefile.in ./testpar/Makefile.in ./tools/Makefile.in Moved the @top_srcdir@ into the makefiles because it was expanded too early and had the wrong value. ./INSTALL Added a warning that if the wrong version of hdf4 tools are installed then `make check' will fail in the tools directory.
* [svn-r1112] Changes since 19990301Robb Matzke1999-03-021-3/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./INSTALL Reorganized and added some additional examples. ./MANIFEST ./aclocal.m4 [NEW] ./configure.in ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] ./bin/ltconfig [NEW] ./bin/ltmain.sh [NEW] Added tests to determine how to compile shared libraries and how to link programs with them before the libraries are installed. Also how to install and uninstall shared libraries. The configure step also prints the names of the config files it's trying to load for easier debugging. ./bin/config.guess ./bin/config.sub Replaced with a newer version from GNU. The changes we made to that file to report `irix6.x' and `FreeBSD' without version numbers have been incorporated into configure.in instead. In the future, do not change these two files (see the top of configure.in instead). By the way, this update was required to get shared libraries working. ./config/linux [REMOVED] ./config/linux-gnulibc1 [NEW] ./config/linux-gnu [NEW] ./config/alpha-dec [REMOVED] ./config/alpha-dec-osf4.0 [REMOVED] ./config/dec-osf4.x [NEW] ./config/irix5.3 [REMOVED] ./config/irix5.x [NEW] ./config/irix64 [REMOVED] ./config/freebsd Moved config files around to agree with output from the new config.guess. The linux file was split into gnu (RedHat), gnulibc1, and gnulibc2 versions. The alpha-dec file was removed (I think it was unused) and the alpha-dec-osf4.0 was changed to dec-osf4.x. The irix5.3 file renamed to irix5.x and the irix64 file was renamed to irix6.x. The freebsd file was changed to point to linux-gnulibc1. These changes were tested on: Linux 2.0 Linux 2.1 FreeBSD 3.2 Irix 5.3 Irix64 6.2 Irix64 6.4 HP/UX 10.20 OSF1 4.0 ./config/alphaev56-dec-osf4.x ./config/irix64 Added warnings similar to linux/freebsd about using compilers with known bugs. ./config/commence.in ./config/conclude.in ./src/Makefile.in ./test/Makefile.in ./testpar/Makefile.in ./tools/Makefile.in Added definitions for shared libraries. This has been tested on the following systems: Linux 2.0 Linux 2.1 FreeBSD 3.2 Irix 5.3 Irix64 6.2 Irix64 6.4 HP/UX 10.20 static only OSF1 4.0 If you want to disable use of shared libraries (you probably do for development purposes since it takes a lot longer to compile and because you have to run dynamically linked programs in a special way if the library hasn't been installed) then add `--disable-shared' to the configure command line. This is all documented in the INSTALL file. ./bin/release Temprarily commented out the MANIFEST checking when running under svf since svf is about to be replaced by a newer version. This change only affects error checking during the release process. ./Makefile.dist ./Makefile.in Added `make check' which does the same thing as `make _test' since the former is endorsed by the GNU coding style and people are used to it. The old `make _test' still works too (and so does `make test' if you use GNU make).
* [svn-r1071] Moved the MPI test to a file of its own (t_mpi.c) for future ↵Albert Cheng1999-02-171-1/+1
| | | | | | | | | addition of other MPI tests. Changed return code tests from comparing with FAIL to with 0. Updated MANIFEST for the addition of a new file. Tested in O2k.
* [svn-r1068] Completed the previous to do auto-configure for parallel tests too.Albert Cheng1999-02-151-7/+6
| | | | | | Also removed the pre-defined "USE_PAUSE" since it should be invoked only in individual cases, rather than as defaults. Tested in O2K.
* [svn-r928] Changes since 19981118Robb Matzke1998-11-191-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5.c ./src/H5Smpio.c ./src/H5T.c ./src/H5Tconv.c ./src/H5Tpublic.h ./src/H5detect.c ./src/H5private.h ./src/H5public.h ./test/big.c The `long long' type isn't quite as prevalent as we had hoped; there is at least one system that defines `__int64' but not `long long'. Therefore, I've temporarily changed all occurrences of `long long' to `long_long' and then #define that in H5private.h based on the existence of `long long' or `__int64'. This gets rid of some #ifdef's in other parts of the code. The semantics of the hdf5 types are: *int8_t Exactly one byte *int16_t At least two bytes. We favor 32-bit integers over 16-bit integers if the 16-bit integer is 4-bytes wide (Cray) *int32_t At least four bytes. *int64_t At least eight bytes long_long The widest integral integer type The H5Smpio.c contains debugging code which is non-portable. ./tools/h5ls.c Changed the order native types are detected so we favor the name `int' over `short' or `long' if two of them are the same. ./config/conclude.in Added a rule to make test programs depend on the hdf5 library. This fixes a minor bug where changing H5detect.c and then running `make test' caused H5Tinit.c to not be recompiled and therefore the test files are not relinked.
* [svn-r907] Changes since 19981111Robb Matzke1998-11-131-0/+36
---------------------- ./INSTALL Added instructions about specifying a path for GNU zlib and HDF4 headers and library. Added comments for each of the tool names. Added h5toh4 as a tool name. ./configure.in ./conigure [REGENERATED] ./src/H5config.h.in [REGENERATED] The config/* scripts get invoked with $CC_BASENAME set the base name of the compiler in order to make it easier to handle setting compiler flags for different compilers in a big case statement. For instance, if $CC has the value /usr/local/mpi/bin/mpicc -ansi -64 then $CC_BASENAME will be `mpicc'. The $CC_BASENAME is not set if $CC is not set. Fixed alignment in `configure --help'. An include and/or library path can be specified for GNU zlib if configure can't find it in normal places. The "normal" means wherever your compiler normally searches, including search paths you've added through environment variables like CPPFLAGS and LDFLAGS. The INSTALL file has instructions. The `-ljpeg' library is detected. If `ssize_t' is not found then a #define is added to H5config.h similar to what we already do for `size_t'. We detect the hdf5 header file `mfhdf.h' and libraries `-lmfhdf' and `-ldf' and if found define the H5TOH4 and TESTH5TOH4 Makefile variables. The user can specify an include and/or library path. The INSTALL file has instructions. The `RUNTEST' variable has been split into `RUNSERIAL' and `RUNPARALLEL' because these are different commands. The makefile still uses `RUNTEST', which defaults to the RUNSERIAL value. The new testpar/Makefile.in sets RUNTEST to the RUNPARALLEL value. The default RUNSERIAL value is empty and the default RUNPARALLEL value is `mpirun -np 2'. These can both be overridden in the config/* files. To make the value the empty string set it like `RUNPARALLEL=none' in the config/* file. The new testpar/Makefile is generated from testpar/Makefile.in ./config/commence.in Added the RUNSERIAL and RUNPARALLEL makefile definitions. ./src/Makefile.in The `H5detect' program is run with RUNSERIAL, which is empty on all platforms except intel-osf1 (ASCI/Red) ./config/conclude.in Removed the `.c.a:' implicit rule -- we don't use it any more. ./config/BlankForm ./config/alpha-dec ./config/alpha-dec-osf4.0 ./config/freebsd2.2.7 ./config/hpux10.20 ./config/hpux9.03 ./config/intel-osf1 ./config/irix5.3 ./config/irix6.2 ./config/irix64 ./config/linux ./config/powerpc-ibm-aix4.2.1.0 ./config/rs6000-ibm-aix4.1.4.0 ./config/solaris2.5 All of these files have been updated to hande multiple compilers. Most of them assume `cc' if CC is not set. The documentation in `BlankForm' has been updated and documentation in the other files refer to `BlankForm'. The intel-osf1 uses LDFLAGS instead of LIBS to specify the extra library search paths. ./examples/Makefile.in ./test/Makefile.in ./tools/Makefile.in Simplified by grouping some dependency information together more succinctly. The tools Makefile.in has been modified to work with the `h5toh4' and `testh5toh4' programs. Until Paul checks these in you may have problems compiling. If so, just create files h5toh4.c and testh5toh4.c that contain: #include <stdio.h> int main(int argc, char *argv[]) { fprintf(stderr, "%s: not implemented\n", argv[0]); return 1; } ./src/H5public.h Removed definition for `ssize_t' since this is now handled by configure in H5config.h with a #define. ./MANIFEST ./testpar/Makefile.in [NEW] Added a makefile for parallel tests. As soon as we get this working properly we can remove the other four makefiles in that directory and maintain just one.
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