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* Add GitHub actions for testing VOL connectors (#3849)jhendersonHDF2023-11-151-3/+36
| | | | | | | | | | | | | | | | * Fix issue with HDF5_VOL_ALLOW_EXTERNAL CMake variable * Add initial API test workflow * Initialize parallel testing with MPI_THREAD_MULTIPLE when testing API * Add CMake variable to allow specifying a VOL connector's package name * Remove call to MPI_Init in serial API tests While previously necessary, it now interferes with VOL connectors that may need to be initialized with MPI_THREAD_MULTIPLE
* HDF5 API test updates (#3835)jhendersonHDF2023-11-131-4/+42
| | | | | | | | | | | | | | | | | | | | | * HDF5 API test updates Removed test duplication from bringing API tests back into the library from external VOL tests repo Synced changes between API tests and library's tests Updated API tests CMake code to directly use and install testhdf5, testphdf5, etc. instead of creating duplicate binaries Added new h5_using_native_vol() test function to determine whether the VOL connector being used is (or the VOL connector stack being used resolves to) the native VOL connector * Remove duplicate variable
* Consistent initialization of hid_t in the tests (#3521)Scot Breitenfeld2023-09-081-5/+5
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* Convert hbool_t --> bool in testpar (#3495)Dana Robinson2023-09-051-2/+2
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* chore: fix grammar - get hang -> get hung (#3272)H. Joe Lee2023-07-241-1/+1
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* Fix some warnings in developer builds (#3247)jhendersonHDF2023-07-181-0/+12
| | | | | * Fix some warnings in developer builds * Switch approach to Winline flag
* Remove HD from HDmem* calls (#3211)Dana Robinson2023-06-291-4/+4
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* Remove programmer/date from comments (#3210)Dana Robinson2023-06-291-12/+0
| | | | * Removes Programmer: and Date: fields * Fixes a few Modifications: fields leftover from previous work
* Remove HD from memory allocate/free calls (#3195)Dana Robinson2023-06-281-19/+19
| | | | | | * HDcalloc * HDfree * HDmalloc * HDrealloc
* Rename HD(f)printf() to (f)printf() (#3194)Dana Robinson2023-06-281-70/+70
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* Added summary report to test big IO (#2908)Scot Breitenfeld2023-05-051-12/+18
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* Comment cleanup (#2689)Quincey Koziol2023-04-111-2/+0
| | | * Clean up content and redundant logging in comments.
* Synchronize HDF5 tests with VOL tests (#2628)jhendersonHDF2023-04-031-2/+9
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* Fix new codespell issues (#2521)Mark Kittisopikul2023-03-081-1/+1
| | | | | * Fix new codespell issues * Have codespell ignore ./config/sanitizer/sanitizers.cmake
* Adjustments to t_bigio.c for >2GiB I/O test (#1992)jhendersonHDF2022-08-171-23/+34
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* Fix typos found in the rest of the hdf5 code-base (#1985)luzpaz2022-08-101-1/+1
| | | | | | | | | | | * Fix typos found in the rest of the hdf5 code-base * Typo in tool.cmake * Revert "Typo in tool.cmake" This reverts commit 06b8403d99757c7d20f1eed530cf317c3d84de4b. * Fix clang-format styling
* Develop clang 13 format (#1933)Allen Byrne2022-07-261-5/+5
| | | | | * Update format source to clang 13 * More format changes
* Warnings fixes (#1680)jhendersonHDF2022-04-251-2/+2
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* Implement support for big I/O for independent reads (#1446)Neil Fortner2022-02-181-7/+30
| | | | | | | | | | * Implement big I/O support for independent reads. Add test for this. * Committing clang-format changes * Update big I/O code in H5FD__mpio_write() to match that in H5FD__mpio_read(). Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Fixed Spelling Errors (#1166)Scot Breitenfeld2021-12-071-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * fixed missed closing of a dataset * fixed missed closing of a dataset * fixed typo in error return * Committing clang-format changes * minor edits * code format * Committing clang-format changes * code format * minor edit * switched from using MPI_count, to actual bytes written for H5FD_mpio_debug rw debugging * Committing clang-format changes * changed size_i in printf to reflect the I/O. * Committing clang-format changes * Fixed seg fault with xlf on BE with -qintsize=8 * fixed error function string * spelling corrections via codespell, added new spell check github actions * Committing clang-format changes * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * Committing clang-format changes * misc * misc * misc * misc * misc * misc * Committing clang-format changes * misc * work around for https://github.com/codespell-project/codespell/issues/2137 * misc * added missing file * misc * misc. * misc * switch to using Codespell with GitHub Actions * misc. * misc. * fixed more sp errors * Fix new typos found by codespell. * fixed proceed with precede * fixed variable in fortran test * fixed minnum * updated spelling list Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
* Fixes parallel issues from recent C99 changes (#809)Dana Robinson2021-06-301-2/+2
| | | | | | | * Fixes parallel issues from recent C99 changes * Adds MPE FUNC --> __func__ changes missed in earlier PRs * Even more missed FUNC --> __func__ macros
* Align with "parallel fence" changes (#479)Quincey Koziol2021-03-241-81/+14
| | | | | | | | | * Small code updates and simplifications * Committing clang-format changes * Fix 'make installcheck' for parallel builds Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Clang-format of source filesAllen Byrne2020-09-301-920/+881
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* Fix some HDfprintf compilation errors: use the right format stringsDavid Young2020-09-241-13/+22
| | | | | ("zu", PRIuHSIZE), avoid casting some printf arguments, pass the right number of arguments.
* testpar/t_2Gio.c: Fix a typo that I think was introduced by aDavid Young2020-01-291-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | previous warnings PR. An array element was assigned to itself---shape[2]Â =Â shape[2];---instead of being assigned to chunk[2]. fortran/src/H5Pf.c: move conditional compilation controlled by H5_NO_DEPRECATED_SYMBOLS outside of a function for readability. fortran/src/H5match_types.c: put a variable's declaration under the same conditional compilation (H5_FORTRAN_HAVE_C_LONG_DOUBLE) as its use. For now, skip compilation of some unused debug dump routines in the JNI. While I'm in the JNI, delete a set-but-unused variable. src/H5Z.c: condition a variable declaration on H5_NO_DEPRECATED_SYMBOLS so that it's not declared but unused or vice versa. test/cache_common.h: add an #include in to get some symbols we need to avoid implicit declaration warnings. test/dsets.c: use a more conventional conditional-compilation syntax. test/dt_arith.c, test/fillval.c: initialize a bunch of uninitialized variables before use. test/vfd.c: pass the expected type of `void **` to posix_memalign(3) instead of `int **`. testpar/t_bigio.c: explicitly compare with 0 instead of using ! when "equal to 0?" is the question not "is false?" Repair some indentation while I'm here. testpar/testpar.h: repair misaligned line-continuation backslashes in a macro that probably should be a function so that we don't have to fiddle with the line continuation to begin with. tools/src/h5repack/h5repack_main.c: fix some compiler fussing about enums. tools/test/perform/pio_engine.c: the compiler fusses if you cast a function call returning double directly to off_t. It's ok if you cast a variable that's a double to off_t, however. Write and use a new function, sqrto(), to avoid the cast warnings.
* rename macrokmu2020-01-281-2/+2
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* pick up from Dave's fixkmu2020-01-271-239/+239
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* leave Wswitch-default for later fixkmu2020-01-271-25/+13
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* fix Wredundant-decls, Wswitch-default, Wdeclaration-after-statement, ↵kmu2020-01-271-17/+28
| | | | Wsign-compare, Wmisleading-indentation, Wshadow
* squash cast warning fixkmu2020-01-231-31/+31
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* remove unsed var,function,macro, etckmu2019-12-061-1/+0
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* Removed set_bigio_count prototype since it has been added to H5private.hRichard Warren2019-10-251-2/+0
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* Change API names for get/set bitio_count. Also added H5_mpi_set_bigio_count ↵Richard Warren2019-10-231-2/+2
| | | | to H5private.h.
* Remove debugging logic from the new t_bigio testRichard Warren2019-10-081-18/+0
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* Expanded t_bigio.c to include Jordan's test from HDFFV-10539Richard Warren2019-10-081-3/+82
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* At the suggestion of the PR reviewers, moved the mpio_create_large_type to ↵Richard Warren2019-10-071-18/+14
| | | | H5mpi.c and renamed the function appropriately. Also moved some support functions to set and get the vvalue where we transistion to using derived datatypes.
* OESS-29 Update HD prefix mostlyAllen Byrne2019-08-241-264/+264
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* HDFFV-10625 -- Implemented a process-0 read and then broadcast for ↵Quincey Koziol2019-01-071-2/+2
| | | | collective read of full (HS_ALL), contiguous, atomic datasets by all the processes in the file communicator.
* Unify the test (t_bigio.c) between hdf5_1_10 and developRichard Warren2018-03-121-316/+79
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* Add commentary around calling H5Screate_simple with a single elementRichard Warren2017-08-291-7/+25
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* Fix the t_bigio test so that it runs on 32bit machinesRichard Warren2017-08-151-5/+7
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* Fix up the ExpressMode check for skipping slow running tests.Richard Warren2017-07-101-1/+1
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* Include code fixes and additional modifications pointed out by code reviewersRichard Warren2017-07-101-8/+64
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* Commit changes needed for pull requestRichard Warren2017-07-051-0/+2097
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