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* VFD SWMR: Sync with develop (#811)Dana Robinson2021-06-301-209/+216
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Normalization with develop * Removes checks and work-arounds for strtoll and strtoull (#769) * Removes checks for (v)snprintf, which are C99 (#772) * Update missing release note info. (#776) * Replaces the H5_OVERRIDE macro with override (#773) The macro is no longer necessary now that we require C++11. * Cleans up some POSIX header bits in H5private.h (#783) * Removes outdated checks for ways inline might be defined (#781) These are obsolete now that we require C99. * Removes checks for system(), which is C89/90 (#782) * Removes C++ dependency on H5private.h (#774) * Removes C++ dependency on H5private.h Most C API calls have been removed, aside from a few uses of free, where we just dropped the 'HD'. A couple of H5_ATTR_UNUSED macros were also replaced with (void) statements. * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Further simplifies Autotools type size checks (#789) Also fixes an issue where clock_gettime and difftime are not detected due to earlier simplifications of this code. * Release Note (#784) * Normalization of CMake H5pubconf.h with Autotools (#791) Mostly just moving things around and changing the comments to keep the delta small. The only symbol change is that for curl/curl.h which I changed to H5_HAVE_CURL_CURL_H to match the Autotools. This symbol is not used in the library and is just an artifact of the checks. * Fix tools test (#794) * Removes ancient Autotools cruft (#790) * Reorganization of C and POSIX headers in H5public.h & H5private.h (#793) * Reorganization of C and POSIX headers in H5public.h & H5private.h Consolidated and removed duplicates * It turns out Windows has sys/types.h Co-authored-by: Larry Knox <lrknox@hdfgroup.org> * Removes checks for signal and set/longjmp, which are C89 (#798) Also removes checks for setjmp.h and stddef.h * Assume frexpl/f and fabsl/f, which are C99 (#799) * Assume the library has C99 types in C++ type code (#806) * Assume the library has C99 types in C++ type code * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Removes obsolete equivalents of C99's __func__ (#800) * Cleans up POSIX/C bits in H5private.h (#804) * Cleans up POSIX/C bits in H5private.h * Assume difftime exists (C89) * Reorg AC_CHECK_HEADERS so headers are in alphabetical order * Split off networking-related AC_CHECK_HEADERS * Remove unused UNAME_CYGWIN from configure.ac * Remove checks for unused sys/timeb.h * Tidying pass over H5private.h HD prefix macros * Tidy H5win32defs.h * Add HD prefix to various scanf calls * Committing clang-format changes * Fixes to the alarm(2) code used in the tests to make Windows happy Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Brings the tools getopt(3) replacement into the main library (#803) * Moves get_option from the tools library to the C library * Adds H5 prefix to get_option call and variables * Renames the H5_get_option long options struct and enum * Removes type guesses when C99 types are missing (#807) * Assume C99 types exist in H5detect.c (#808) * Fixes parallel issues from recent C99 changes * Adds MPE FUNC --> __func__ changes missed in earlier PRs * Fix typo * Fixes parallel issues from recent C99 changes (#809) * Fixes parallel issues from recent C99 changes * Adds MPE FUNC --> __func__ changes missed in earlier PRs * Even more missed FUNC --> __func__ macros * Removes remaining H5_TIME_WITH_SYS_TIME cruft (#810) Mostly from CMake Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
* Normalization of parallelDana Robinson2021-05-071-11/+17
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* Brings H5CX_pop() changes from developDana Robinson2021-04-081-54/+30
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* Fixes phdf5Dana Robinson2021-03-251-2/+2
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* Updates license url and history docsDana Robinson2021-03-251-1/+1
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* Formats the source and updates the gcc warning pragmasDana Robinson2021-03-251-2867/+2270
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* Fixed a bug in testpar/t_cache.c concerning checking expectedDana Robinson2020-05-201-2/+2
| | | | vs. actual cache entry reads and writes.
* squash cast warning fixkmu2020-05-201-17/+18
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* fix unused related warningskmu2020-05-201-9/+5
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* remove unsed var,function,macro, etckmu2020-05-201-1/+2
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* fix uninitizlized warningkmu2020-05-201-3/+3
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* Merge all of my changes from merge-back-to-feature-vfd_swmr-attempt-1,David Young2019-12-091-291/+253
| | | | | | | | including the merge of `hdffv/hdf5/develop`, back to the branch that Vailin and I share. Now I need to put this branch on a fork with a less confusing name than vchoi_fork!
* HD prefix and whitespaceAllen Byrne2018-08-281-1/+1
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* Corrections for parallel I/O & tests.Quincey Koziol2018-03-211-0/+6
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* Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-03-181-1374/+1372
|\ | | | | | | | | | | merge_func_enter_vol Plus initial steps toward merging API context push into FUNC_ENTER_API* macros
| * Cleanup overuse of include filesAllen Byrne2018-02-141-1373/+1372
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* | Add API context interface and use it throughout the library.Quincey Koziol2018-03-151-6/+5
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* Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* Misc. small cleanups to sync against incoming page buffering changes.Quincey Koziol2017-03-021-7/+3
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* Correct issues from pull request reviews.Quincey Koziol2017-02-281-2/+1
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* Corrected version of 4b5e05c084f93c35dae946c2c9e814d565a613b0:Quincey Koziol2017-02-281-16/+16
| | | | | Fix some more signed -> unsigned value issues with cache data structures, also misc. style cleanups. All to align w/incoming page_buffering changes.
* Revert "Fix some more signed -> unsigned value issues with cache data ↵Quincey Koziol2017-02-281-17/+22
| | | | | | structures, also" This reverts commit 4b5e05c084f93c35dae946c2c9e814d565a613b0.
* Fix some more signed -> unsigned value issues with cache data structures, alsoQuincey Koziol2017-02-231-22/+17
| | | | misc. style cleanups. All to align w/incoming page_buffering changes.
* Bring change to use array of metadata cache entry classes for H5C_createQuincey Koziol2017-01-281-2/+3
| | | | instead of array of class names from cache image branch.
* Bring changes to metadata cache "get entry status" call and newQuincey Koziol2017-01-061-0/+24
| | | | | "child serialized / unserialized" messages and support from the cache image branch.
* Add "image up to date" flag / parameter to metadata cache entry status calls.Quincey Koziol2017-01-061-1/+1
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* Bring SWMR support in to the main development branch. (Finally!) More testsQuincey Koziol2016-12-021-20/+62
| | | | and the tool and API wrappers will be coming in over the weekend.
* Eliminate unnecessary data structure for parallel collective metadata cache I/OQuincey Koziol2016-11-281-1/+0
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* Remove unnecessary assert.Quincey Koziol2016-11-251-1/+1
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* Bring over support for retrying metadata cache entry loads, along with all theQuincey Koziol2016-11-201-7/+8
| | | | supporting metadata cache callback changes, etc.
* Remove 'clear' callback from metadata cache client interface, using theQuincey Koziol2016-11-181-61/+12
| | | | new 'entry cleaned' notify action innstead.
* Remove explicit support within the metadata cache for tracked compressedQuincey Koziol2016-11-171-15/+12
| | | | entries, they are now completely handled in the clients.
* Bring over new 'notify' metadata cache client callback actions for when anQuincey Koziol2016-11-121-2/+55
| | | | | entry is cleaned / dirtied or its [flush dependency] child entry is cleaned / dirtied.
* [svn-r30075] Description:Quincey Koziol2016-06-141-7/+0
| | | | | | | | | | Bring object/dataset/group/named datatype features from revise_chunks branch to trunk. Also CMake support for h5format_convert and a bunch of misc. cleanups. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r30068] Description:Quincey Koziol2016-06-131-2/+2
| | | | | | | | Bring metadata cache corking to trunk. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29081] - merge in the phdf5_metadata_opt/ branch with the collective ↵Mohamad Chaarawi2016-02-101-5/+279
|\ | | | | | | | | | | | | | | metadata optimizations. - rename H5AC_dxpl_id to H5AC_ind_read_dxpl_id and update all usage in the library tested on bb-8 with parallel and serial.
| * [svn-r29079] rename the coll read requirement function.Mohamad Chaarawi2016-02-101-2/+2
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| * [svn-r29077] Description:Quincey Koziol2016-02-101-1/+1
| | | | | | | | | | | | | | | | Normalize against the trunk, in preparation for final merge. Tested on: MacOSX/64 10.11.3 (amazon) w/serial & parallel (h5committest not required on this branch)
| * [svn-r29059] merge from trunk.Mohamad Chaarawi2016-02-071-5/+5
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| * [svn-r28895] Description:Quincey Koziol2016-01-141-2/+1
| | | | | | | | | | | | | | | | Minor code tweaks and cleanups during review. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5comittest not required on this branch)
| * [svn-r28649] - add new API to toggle collective metadata write.Mohamad Chaarawi2015-12-141-14/+5
| | | | | | | | | | - set default to FALSE - fix some bugs.
| * [svn-r27929] merge from trunk.Mohamad Chaarawi2015-10-011-4/+4
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| * | [svn-r27576] - mark the entry as indepndent when expunged.Mohamad Chaarawi2015-08-251-22/+2
| | | | | | | | | | | | - disable the metadata coll hint for smoke checks 1 & 2.
| * | [svn-r27436] merge from trunk.Mohamad Chaarawi2015-07-271-4/+4
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| * | | [svn-r27264] some cleanups.Mohamad Chaarawi2015-06-221-6/+1
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| * | | [svn-r27261] apply metadata enhancement patch that was based on the mdc 3 ↵Mohamad Chaarawi2015-06-211-1/+310
| | | | | | | | | | | | | | | | branch.
* | | | [svn-r29057] added dxpl type checking when debug mode is enabled ↵Mohamad Chaarawi2016-02-071-5/+5
| |_|/ |/| | | | | | | | | | | | | | (H5_DEBUG_BUILD) tested on bb-8 with Serial and Parallel, debug and production builds.
* | | [svn-r27768] Description:Quincey Koziol2015-09-141-3/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Complete revamp of package initialization/shutdown mechanism in the library. Each package now has a single init/term routine. This new way should avoid packages being re-initialized during library shutdown and is also be _much_ more proactive about giving feedback for resource leaks internal to the library. Introduces a new "module" header file for packages in the library (e.g src/H5Fmodule.h) which sets up some necessary package configuration macros for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly modified version of this header, src/H5FDdrvr_module.h) Also cleaned up a bunch of resources leaks all across the library and tests, along with addressing many warnings, as I encountered them. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel Linux/64 3.10.x (kituo) w/serial & parallel Linux/64 2.6.x (ostrich) w/serial
* | | [svn-r27710] Description:Quincey Koziol2015-09-091-1/+1
| |/ |/| | | | | | | | | | | | | | | Bring the "metadata rings" code from its branch (mdc_rings_v2) to the trunk. (This change will support the page buffering feature) Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel (h5committest forthcoming)
* | [svn-r27296] Description:Quincey Koziol2015-06-291-1/+1
| | | | | | | | | | | | | | | | | | Correct error with braces around macro (in production builds), also clean up a few warnings. Tested on: MacOSX/64 10.10.3 (amazon) w/serial, parallel & production Linux/32 2.6 (jam) w/serial & parallel
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