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* Hdf5 1 10 update license url part2 (#404)Larry Knox2021-03-011-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * close #195. (#196) * Update HDF5PluginMacros.cmake * Update HDF5PluginMacros.cmake * Modify temporary rpath for testing in java example scripts. (#230) * Fix undefined left shifting of negative numbers (#338) Undefined Bahavior Sanitizer errored here about left shifting negative numbers. * Update license url (#332) * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING file - src and test directories. * Update license url part2 (#333) * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING file - files not in src or test. * Update URL in source file Copyright headers for web. Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org> Co-authored-by: Sean McBride <sean@rogue-research.com>
* Source formattedAllen Byrne2020-10-011-2852/+2253
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* Fix Werror issues, whitespace, casts and unused varsAllen Byrne2020-04-161-11/+12
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* OESS-29 Update HD prefix and compare against developAllen Byrne2019-08-231-19/+19
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* Cleanup when merging to other branchesAllen Byrne2019-07-301-2/+2
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* Fix some collective metadata read issuesJordan Henderson2019-02-121-8/+8
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* Merge of logging framework updates.Dana Robinson2018-12-311-251/+212
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* Replaced all MPI-1 calls with MPI-2 equivalents (from develop).Dana Robinson2018-12-311-11/+11
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* Update system commands with HD prefix and whitespaceAllen Byrne2018-08-281-1/+1
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* Corrections for parallel I/O & tests.Quincey Koziol2018-03-211-0/+6
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* Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-03-181-1374/+1372
|\ | | | | | | | | | | merge_func_enter_vol Plus initial steps toward merging API context push into FUNC_ENTER_API* macros
| * Cleanup overuse of include filesAllen Byrne2018-02-141-1373/+1372
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* | Add API context interface and use it throughout the library.Quincey Koziol2018-03-151-6/+5
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* Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* Misc. small cleanups to sync against incoming page buffering changes.Quincey Koziol2017-03-021-7/+3
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* Correct issues from pull request reviews.Quincey Koziol2017-02-281-2/+1
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* Corrected version of 4b5e05c084f93c35dae946c2c9e814d565a613b0:Quincey Koziol2017-02-281-16/+16
| | | | | Fix some more signed -> unsigned value issues with cache data structures, also misc. style cleanups. All to align w/incoming page_buffering changes.
* Revert "Fix some more signed -> unsigned value issues with cache data ↵Quincey Koziol2017-02-281-17/+22
| | | | | | structures, also" This reverts commit 4b5e05c084f93c35dae946c2c9e814d565a613b0.
* Fix some more signed -> unsigned value issues with cache data structures, alsoQuincey Koziol2017-02-231-22/+17
| | | | misc. style cleanups. All to align w/incoming page_buffering changes.
* Bring change to use array of metadata cache entry classes for H5C_createQuincey Koziol2017-01-281-2/+3
| | | | instead of array of class names from cache image branch.
* Bring changes to metadata cache "get entry status" call and newQuincey Koziol2017-01-061-0/+24
| | | | | "child serialized / unserialized" messages and support from the cache image branch.
* Add "image up to date" flag / parameter to metadata cache entry status calls.Quincey Koziol2017-01-061-1/+1
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* Bring SWMR support in to the main development branch. (Finally!) More testsQuincey Koziol2016-12-021-20/+62
| | | | and the tool and API wrappers will be coming in over the weekend.
* Eliminate unnecessary data structure for parallel collective metadata cache I/OQuincey Koziol2016-11-281-1/+0
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* Remove unnecessary assert.Quincey Koziol2016-11-251-1/+1
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* Bring over support for retrying metadata cache entry loads, along with all theQuincey Koziol2016-11-201-7/+8
| | | | supporting metadata cache callback changes, etc.
* Remove 'clear' callback from metadata cache client interface, using theQuincey Koziol2016-11-181-61/+12
| | | | new 'entry cleaned' notify action innstead.
* Remove explicit support within the metadata cache for tracked compressedQuincey Koziol2016-11-171-15/+12
| | | | entries, they are now completely handled in the clients.
* Bring over new 'notify' metadata cache client callback actions for when anQuincey Koziol2016-11-121-2/+55
| | | | | entry is cleaned / dirtied or its [flush dependency] child entry is cleaned / dirtied.
* [svn-r30075] Description:Quincey Koziol2016-06-141-7/+0
| | | | | | | | | | Bring object/dataset/group/named datatype features from revise_chunks branch to trunk. Also CMake support for h5format_convert and a bunch of misc. cleanups. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r30068] Description:Quincey Koziol2016-06-131-2/+2
| | | | | | | | Bring metadata cache corking to trunk. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29081] - merge in the phdf5_metadata_opt/ branch with the collective ↵Mohamad Chaarawi2016-02-101-5/+279
|\ | | | | | | | | | | | | | | metadata optimizations. - rename H5AC_dxpl_id to H5AC_ind_read_dxpl_id and update all usage in the library tested on bb-8 with parallel and serial.
| * [svn-r29079] rename the coll read requirement function.Mohamad Chaarawi2016-02-101-2/+2
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| * [svn-r29077] Description:Quincey Koziol2016-02-101-1/+1
| | | | | | | | | | | | | | | | Normalize against the trunk, in preparation for final merge. Tested on: MacOSX/64 10.11.3 (amazon) w/serial & parallel (h5committest not required on this branch)
| * [svn-r29059] merge from trunk.Mohamad Chaarawi2016-02-071-5/+5
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| * [svn-r28895] Description:Quincey Koziol2016-01-141-2/+1
| | | | | | | | | | | | | | | | Minor code tweaks and cleanups during review. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5comittest not required on this branch)
| * [svn-r28649] - add new API to toggle collective metadata write.Mohamad Chaarawi2015-12-141-14/+5
| | | | | | | | | | - set default to FALSE - fix some bugs.
| * [svn-r27929] merge from trunk.Mohamad Chaarawi2015-10-011-4/+4
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| * | [svn-r27576] - mark the entry as indepndent when expunged.Mohamad Chaarawi2015-08-251-22/+2
| | | | | | | | | | | | - disable the metadata coll hint for smoke checks 1 & 2.
| * | [svn-r27436] merge from trunk.Mohamad Chaarawi2015-07-271-4/+4
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| * | | [svn-r27264] some cleanups.Mohamad Chaarawi2015-06-221-6/+1
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| * | | [svn-r27261] apply metadata enhancement patch that was based on the mdc 3 ↵Mohamad Chaarawi2015-06-211-1/+310
| | | | | | | | | | | | | | | | branch.
* | | | [svn-r29057] added dxpl type checking when debug mode is enabled ↵Mohamad Chaarawi2016-02-071-5/+5
| |_|/ |/| | | | | | | | | | | | | | (H5_DEBUG_BUILD) tested on bb-8 with Serial and Parallel, debug and production builds.
* | | [svn-r27768] Description:Quincey Koziol2015-09-141-3/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Complete revamp of package initialization/shutdown mechanism in the library. Each package now has a single init/term routine. This new way should avoid packages being re-initialized during library shutdown and is also be _much_ more proactive about giving feedback for resource leaks internal to the library. Introduces a new "module" header file for packages in the library (e.g src/H5Fmodule.h) which sets up some necessary package configuration macros for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly modified version of this header, src/H5FDdrvr_module.h) Also cleaned up a bunch of resources leaks all across the library and tests, along with addressing many warnings, as I encountered them. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel Linux/64 3.10.x (kituo) w/serial & parallel Linux/64 2.6.x (ostrich) w/serial
* | | [svn-r27710] Description:Quincey Koziol2015-09-091-1/+1
| |/ |/| | | | | | | | | | | | | | | Bring the "metadata rings" code from its branch (mdc_rings_v2) to the trunk. (This change will support the page buffering feature) Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel (h5committest forthcoming)
* | [svn-r27296] Description:Quincey Koziol2015-06-291-1/+1
| | | | | | | | | | | | | | | | | | Correct error with braces around macro (in production builds), also clean up a few warnings. Tested on: MacOSX/64 10.10.3 (amazon) w/serial, parallel & production Linux/32 2.6 (jam) w/serial & parallel
* | [svn-r27293] Description:Quincey Koziol2015-06-271-3/+3
|/ | | | | | | | Split parallel metadata cache code into separate source code modules. Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel (too minor for h5committest)
* [svn-r27237] Description:Quincey Koziol2015-06-181-309/+602
| | | | | | | | | Merge v3 metadata cache changes to trunk. Yay! :-) Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.x (jam) w/serial & parallel (daily tested on branch)
* [svn-r27204] Description:Quincey Koziol2015-06-151-236/+181
| | | | | | | | | Clean up compiler warnings before merging in v3 metadata cache changes from branch. Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.x (jam) w/serial & parallel
* [svn-r27144] Description:Quincey Koziol2015-06-031-2/+3
| | | | | | | | | | Normalize trunk against the metadata_cache_merge branch, in preparation for merging the branch into the trunk. Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/64 2.6.x (koala) w/serial Linux/32 2.6.x (jam) w/serial & parallel