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* [svn-r21228] Added #ifdefs around #include unistd.h and created windows ↵Allen Byrne2011-08-151-0/+3
| | | | | | getlogin() function for building HDF5 parallel on windows. Reviewed and tested locally and tested by user.
* [svn-r19959] Bug: the VRFY macro, for some reason, called MPI_Finalize() ↵Albert Cheng2011-01-161-0/+8
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | when it encountered error and wanted to exit the test program. This was not good since if only a subset of processes called MPI_Finalize(), the other processes will likely hang. That happened in AIX that it would waited till the alarm signal to kill the processes. Definitely a waste of time. Solution: Changed it to call MPI_Abort. That showed another problem. HDF5 has setup atexit post-process to try to close unclose objects, release resources, etc. But if the MPI processes have encountered an error and has been aborted, it is not likely any more MPI calls can function properly. E.g., it would attempt to free some communicators in the HDF5 MPIO file handle. It would again hang. Solution: need to call H5dont_atexit() to disable any atexit post-processing. This must be done early, like before calling H5open. This is added to each parallel test main program. testphdf5.h: Changed macros VRFY and MESG. Added comments too. testphdf5.c: t_mpi.c: t_cache.c: t_shapesame.c: Added H5dont_atexit. Tested: h5committest.
* [svn-r19235] Description:Quincey Koziol2010-08-121-56/+62
| | | | | | | | | | | | | | | | | | | | | | | | | | Bring r19234 from the 1.8 branch to the trunk: Initialize loop variable that caused failures in certain circumstances. Also clean up compiler warnings and release MPI datatype. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.4 (amazon) in debug mode Mac OS X/32 10.6.4 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode Mac OS X/32 10.6.4 (amazon) w/parallel, in debug mode
* [svn-r19114] Description:Quincey Koziol2010-07-201-12/+11
| | | | | | | | | Rename H5AC_set() to H5AC_insert_entry() Get rid of H5C_set_skip_flags() & related flags Tested on: Mac OS X/32 10.6.4 (amazon) w/debug, production & parallel (too simple to require h5committest)
* [svn-r19096] Description:Quincey Koziol2010-07-191-301/+1903
| | | | | | | | | | | | | | | | | | | | | Bring "round robin" metadata write strategy code from 'round_robin' branch to the trunk. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r19005] Purpose:Mike McGreevy2010-06-151-2/+4
| | | | | | | | | | | | | | | | | | | | | | | Commit metadata tagging framework. Description: This check-in contains a new framework whose goal is to apply a tag value to each new entry in the metadata cache as it is created. This tag value is such that it relates each piece of metadata to the HDF5 object that it belongs to (dataset, group, et cetera). This changeset includes the framework that applies the tags as well as a suite of tests to verify correct tag application, though does not yet make use of the tag values to flush/evict individual objects. Please refer to the "flush/evict individual objects" RFC for further discussion of these changes. Tested: jam, amani, linew (h5committest) liberty, abe, blue print
* [svn-r18917] Description:Quincey Koziol2010-05-271-205/+155
| | | | | | | | | | | | | | | | | | | | | | | | Bring r18911 (plus some adaptions to match the code on the trunk) from the metadata journaling "merging" branch to the trunk: More general changes to align trunk with eventual changes from metadata journaling branch. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18864] Description:Quincey Koziol2010-05-201-7/+3
| | | | | | | | | | | | | | | | | | | | General cleanups to align metadata journaling branch and trunk Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18768] Description:Quincey Koziol2010-05-111-2/+2
| | | | | | | | | | | | | | | | | Correct a mis-merged patch when marking an entry dirty. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r18740] Description:Quincey Koziol2010-05-071-8/+7
| | | | | | | | | | | | | | | | | | | | | | | Bring r18738 from metadata journaling 'merging' branch to trunk: Switch H5AC_resize_pinned_entry() to work on protected entries as well, and rename to H5AC_resize_entry() Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18725] Description:Quincey Koziol2010-05-061-36/+36
| | | | | | | | | | | | | | | | | | | | | | Bring r18724 from metadata journaling 'merging' branch to trunk: Rename H5[A]C_rename to H5[A]C_move_entry. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18721] Description:Quincey Koziol2010-05-061-88/+22
| | | | | | | | | | | | | | | | | | | | | | | | | Bring r18720 from metadata journaling merging branch to trunk: Bring changes from metadata journaling branch to 'merging' branch: Rename H5[A]C_mark_pinned_or_protected_entry_dirty() to H5[A]C_mark_entry_dirty() and get rid of H5[A]C_mark_pinned_entry_dirty(). Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18702] Description:Quincey Koziol2010-05-051-14/+12
| | | | | | | | | | | | | | | | | | | | | | | Bring r18672 from metadata journaling "merging" branch to trunk: Mostly changes to move to only using one 'user data' parameter for calls to H5AC_protect(), along with some minor reformatting code cleanups. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18197] Description:Quincey Koziol2010-01-301-29/+29
| | | | | | | | | Trim trailing whitespace from source code files with this command: find . \( -name "*.[ch]" -or -name "*.cpp" -or -name "*.f90" \) -print |xargs -n 1 sed -i "" 's/[[:blank:]]*$//' Tested on: None - eyeballed only
* [svn-r18171] Description:Quincey Koziol2010-01-271-55/+28
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r18169 from 'merge_metadata_journaling' branch back to trunk: Converge changes on metadata_journaling branch and trunk: - Remove H5F_t* parameter from H5HL_unprotect() - Remove H5F_t* parameter from H5HL_dirty() - Remove H5F_t* parameter from H5O_unprotect() - Bring changes to metadata caching routines back: - H5AC_pin_protected_entry() - H5AC_resize_pinned_entry() - H5AC_unpin_entry() - H5AC_mark_pinned_entry_dirty() - H5AC_mark_pinned_or_protected_entry_dirty() - Revise internal H5C routines to drop H5F_t* and/or H5C_t* as parameter where possible - Revise tests to follow internal routine changes Also, drop file/cache pointer parameter from create/destroy flush dependency internal cache calls. Also, other minor changes to speedup the 'cache' test. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.2 (amazon) in debug mode Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
* [svn-r18031] Description:Quincey Koziol2009-12-171-6/+8
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r18030 from merge_metadata_journaling branch to trunk: Bring "brush clearing" changes (whitespace & style issues, mostly) from metadata_journaling branch to the "merging" branch, to converge the trunk and the metadata_journaling branch. Also, some other minor cleanups along the way. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.2 (amazon) in debug mode Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
| * [svn-r18030] Description:Quincey Koziol2009-12-171-6/+8
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring "brush clearing" changes (whitespace & style issues, mostly) from metadata_journaling branch to the "merging" branch, to converge the trunk and the metadata_journaling branch. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.2 (amazon) in debug mode Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* | [svn-r17411] Description:Quincey Koziol2009-08-241-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Make H5AC_flush just flush the cache and make H5AC_dest perform the proper parallel synchronization before destroying the cache. Also, further discriminate between 'closing' and 'non-closing' actions in H5F_flush. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.8 (amazon) in debug mode Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* | [svn-r17365] Description:Quincey Koziol2009-08-151-1/+5
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Final merge of changes from sblock_mdc branch back to trunk. The superblock is now managed by the metadata cache. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.8 (amazon) in debug mode Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* | [svn-r16632] Description:Quincey Koziol2009-03-311-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Remove unnecessary 'udata' parameter from H5AC_set() and 'notify' callback (introduced with checkin that added the 'notify' callback) Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.6 (amazon) in debug mode Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* | [svn-r16631] Description:Quincey Koziol2009-03-311-0/+1
| | | | | | | | | | | | Correct error for 'notify' callback revealed in laggard parallel test Tested on: Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* | [svn-r16630] Description:Quincey Koziol2009-03-311-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Add 'notify' callback to metadata cache clients, so that they can be aware when the cache has taken/will take certain actions. Notifications are urrently limited to when an entry has successfully entered the cache (via an insertion or a load from the file) and when an entry is about to be evicted from the cache. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.6 (amazon) in debug mode Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* | [svn-r16627] Description:Quincey Koziol2009-03-301-1/+1
| | | | | | | | | | | | | | | | Fix another set of missing parameters to updated H5C_get_entry_status() call. Tested on: Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* | [svn-r16560] Description:Quincey Koziol2009-03-101-42/+43
| | | | | | | | | | | | | | | | | | | | Remove another call to H5E_clear_stack() from within the library. Clean up lots of compiler warnings. Tested on: Mac OS X/32 10.5.6 (amazon) (followup on other platforms forthcoming)
* | [svn-r16451] Repaired intermittant failure of the t_cache test in testpar.John Mainzer2009-02-061-7/+147
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | The failure was caused by some over active sanity checking code in unlock_entry(). In essence the code did not consider the possibility that under certain, very unusual circumstances, an entry could be flushed to disk during the H5AC_unprotect() call. Instead, it simply failed if a dirty entry was marked clean after the call to H5AC_unprotect(). This bug in the test code was exposed by recent changes to the default cache configuration made as part of the "metadata blizard" bug fix. Fixed the bug by adding code to detect when an entry is flushed during the call to H5AC_unprotect(), and not trigger a failure if a dirty entry is marked clean after a call to H5AC_unprotect() if the entry has been flushed. In passing also found and fixed another test bug in which expunged entries were erroneously marked as dirty in the test code's independant register of entry status. Tested parallel on Phoenix (AMD64 Linux) and Jam. Also ran t_cache manually hundreds of times looking for intermittant failures. Larry kindly tested (parallel) on Mercury.
* | [svn-r15800] Description:Quincey Koziol2008-10-071-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring file free space branch changes through r15795 into trunk, which includes a fair bit of code cleanup & rearrangement along with a couple of bug fixes also. Tested on: Mac OS X/32 10.5.5 (amazon) in debug mode Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* | [svn-r15628] Description:Quincey Koziol2008-09-161-37/+37
|/ | | | | | | | | | | | | Remove trailing whitespace from C/C++ source files, with the following script: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Tested on: Mac OS X/32 10.5.5 (amazon) No need for h5committest, just whitespace changes...
* [svn-r14442] Modified metadata cache to adapt more quickly to the insertion of aJohn Mainzer2008-01-181-1/+1
| | | | | | | | | | | | | | | | | large entry, or to a large increases in the size of an existing entry. This required some additions to the cache configuration structure, and thus will require changes in the metadata cache documentation. The basic idea is to monitor the size of entries as they are loaded, inserted, or increased in size. If the size of the entry (or increase) exceeds some user selected fraction of the size of the cache, increase the size of the cache. Note that this fix was designed quickly -- while it deals with the use case that exposed the problem, we may have to revisit the issue later. Tested serial and parallel on Phoenix, and h5committest.
* [svn-r14064] Implemented function allowing the user to cork the metadata cache.John Mainzer2007-08-101-16/+16
| | | | Also implemented associated test code.
* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-071-2/+3
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
* [svn-r12594] Added small parallel test for modification of ↵John Mainzer2006-08-171-15/+55
| | | | | | | | H5C_insert_entry() allowing insertion and pinning of a cache entry in one call. h5commit tested
* [svn-r12462] Committed a variety of metadata cache related changes:John Mainzer2006-07-131-23/+738
| | | | | | | | | | | | | | | | | | | | | | 1) Added trace file support to the metadata cache. This allows capture of all metadata cache calls in trace files for purposes of optimization and debuging. 2) Added an expunge entry function. This allows an entry to be deleteded from the cache without writing it to disk even if it is dirty. 3) Added a function call to resize pinned entries. 4) Added code to deal with entries that are dirty on load. This is needed in support of a bug fix which can alter object headers on load to repair files. 5) Added progress reporting code to the "MDC API smoke check" test in cache_api.c. To enable the progress reporting, set report_progress to TRUE in mdc_api_call_smoke_check(). Tested with h5committest, and a parallel test on phoenix (dual athelon linux box).
* [svn-r12440] Purpose:Quincey Koziol2006-06-271-275/+275
| | | | | | | | | | | Code cleanup Description: Trim trailing whitespace in Makefile.am and C/C++ source files to make diffing changes easier. Platforms tested: None necessary, whitespace only change
* [svn-r12374] Purpose:John Mainzer2006-05-241-50/+706
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | 1) Check in potential fix to unreproduceable bug in t_cache observed on Cobalt 2) Check in code supporting added pinned entry features in the metadata cache. Description: 1) Elena encountered a bug in t_cache when running on Cobalt. On investigation I found a potential race condition in t_cache that could explain her observation. 2) Quincey requested additions to the metadata cache allowing renaming of pinned entryies, and marking of pinned or protected entries as dirty. Solution: 1) Modified t_cache.c to prevent the potential race condition. Elena was unable to reproduce the bug on Cobalt, so we don't know if my fix actually addressed the problem. 2) Added code supporting the requested functions. The changes were relatively trivial, but required substantial new test code. Platforms tested: h5committest, serial test on heping, parallel test on phoenix. Misc. update:
* [svn-r12321] Purpose:John Mainzer2006-05-021-16/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug fix Description: Fix two test bugs: 1) Unitialized variable bug in test of H5C_get_entry_status() (in test/cache.c) 2) Incorrect initialization of constant in t_cache when running with MPE. (in testpar/t_cache.c) Solution: 1) Don't test uninitialize variable. 2) Correct initialzation of constant in MPE case. Platforms tested: Tested on Heping and Copper. Misc. update:
* [svn-r12316] Purpose:Quincey Koziol2006-04-291-12/+14
| | | | | | | | | | | | | | | Code cleanup/feature twist Description: Adjust recent H5AC routines to take H5F_t pointers instead of H5C_t pointers, to match the rest of the H5AC routines. This change propagated into a few of the tests, which also had some compiler warnings cleaned up... Platforms tested: FreeBSD 4.11 (sleipnir) w/parallel Linux 2.4/64 (mir) w/C++ & FORTRAN
* [svn-r12311] Purpose:John Mainzer2006-04-281-132/+1046
| | | | | | | | | | | | | | | | | | | | | | | | | Add pinned entry capability to cache. Description: For frequently accessed cache entries, the protect/unprotect overhead is sometimes a bottleneck. Solution: Allow entries to be pinned in the cache. Pinned entries can't be evicted, but can be flushed or modified. Platforms tested: h5committested -- minus one small typo in test/cache.c whose fix was tested on copper and heping only. Misc. update:
* [svn-r12227] Purpose:Albert Cheng2006-04-121-5/+5
| | | | | | | | | | | | | | | | | bug fix. Description: The MPE_Stop_log did not work in copper. It spewed out MPE errors and ended in infinite looping. Solution: Changed to a smaller test size to avoid generating huge MPE log files when MPE is configured in. Platforms tested: Copper (mpe) Misc. update:
* [svn-r12224] Purpose:Albert Cheng2006-04-111-0/+5
| | | | | | | | | | | | | | | | Bug fix. Description: When MPE is used, the test generates huge Clog files in /tmp that could fill up the disk (like in Copper.) Solution: Turned off MPE logging. Platforms tested: heping (pp) and copper(pp) Misc. update:
* [svn-r11915] Purpose:John Mainzer2006-01-311-7/+19
| | | | | | | | | | | | | | | | | | | Attempt to ensure that the parallel cache test runs at a reasonable speed with large numbers of processors. Description: In some cases, the number of random locks and unlocks was a multiple of the MPI rank. Solution: Use rank % 4 instead of simply rank. Platforms tested: copper Misc. update:
* [svn-r11904] Purpose:John Mainzer2006-01-291-0/+3487
Add a file that I forgot in my last checkin. Description: t_cache.c is the source file for the new parallel metadata cache test. Solution: See above. Platforms tested: h5committested before the last checkin. Will run another h5committest shortly, but it shouldn't be necessary as there are no new changes. Misc. update:
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