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* HDF5 API test updates (#3835)jhendersonHDF2023-11-131-7/+197
| | | | | | | | | | | | | | | | | | | | | * HDF5 API test updates Removed test duplication from bringing API tests back into the library from external VOL tests repo Synced changes between API tests and library's tests Updated API tests CMake code to directly use and install testhdf5, testphdf5, etc. instead of creating duplicate binaries Added new h5_using_native_vol() test function to determine whether the VOL connector being used is (or the VOL connector stack being used resolves to) the native VOL connector * Remove duplicate variable
* Fix several spelling/grammar issues (#3621)jhendersonHDF2023-10-031-1/+1
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* Strip HD prefix from string/char C API calls (#3540)Dana Robinson2023-09-151-7/+7
| | | | | | | | | | | | | | | | | | | | | * Strip HD prefix from string/char C API calls * HD(f)(put|get)(s|c) * HDstr* * HDv*printf * HD(s)(print|scan)f * HDperror But NOT: * HDstrcase* * HDvasprintf * HDstrtok_r * HDstrndup As those are not C99 and have portability work-around implementations. They will be handled later. * Fix th5_system.c screwup
* Consistent initialization of hid_t in the tests (#3521)Scot Breitenfeld2023-09-081-18/+18
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* Convert hbool_t --> bool in testpar (#3495)Dana Robinson2023-09-051-12/+12
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* Fix use of uninitialized value in testpar/t_dset.c test (#3423)jhendersonHDF2023-08-241-0/+2
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* chore: fix typo (#3405)H. Joe Lee2023-08-221-1/+1
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* Implementation of the mpio driver with selection I/O. (#3222)vchoi-hdfgroup2023-08-071-1/+1
| | | | * This changes the default selection I/O to on for MPIO.
* Remove HD from HDmem* calls (#3211)Dana Robinson2023-06-291-2/+2
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* Remove programmer/date from comments (#3210)Dana Robinson2023-06-291-18/+0
| | | | * Removes Programmer: and Date: fields * Fixes a few Modifications: fields leftover from previous work
* Remove HD from memory allocate/free calls (#3195)Dana Robinson2023-06-281-81/+81
| | | | | | * HDcalloc * HDfree * HDmalloc * HDrealloc
* Rename HD(f)printf() to (f)printf() (#3194)Dana Robinson2023-06-281-84/+84
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* Rename HDassert() to assert() (#3191)Dana Robinson2023-06-281-5/+5
| | | | | * Change HDassert to assert * Fix bin/make_err
* Implement selection I/O with type conversion (#2823)Neil Fortner2023-04-281-10/+80
| | | | | Initial implementation of selection I/O with type conversion. Allows Parallel collective I/O with type conversion, as long as selection I/O is enabled.
* Remove dead code hidden behind #ifdef LATER (#2686)Dana Robinson2023-04-101-3/+0
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* Update copyright headers (#2184)Larry Knox2022-11-011-1/+0
| | | | | * Updated source file copyright headers to remove "Copyright by the Board of Trustees of the University of Illinois", which is kept in the top-level COPYING file.
* Fix typos found in the rest of the hdf5 code-base (#1985)luzpaz2022-08-101-1/+1
| | | | | | | | | | | * Fix typos found in the rest of the hdf5 code-base * Typo in tool.cmake * Revert "Typo in tool.cmake" This reverts commit 06b8403d99757c7d20f1eed530cf317c3d84de4b. * Fix clang-format styling
* Develop clang 13 format (#1933)Allen Byrne2022-07-261-25/+25
| | | | | * Update format source to clang 13 * More format changes
* sprintf to snprintf (#1815)Sean McBride2022-06-221-2/+3
| | | | | | | | | | | * Straightforward conversion of sprintf to the safer snprintf * Trickier conversion of sprintf to safer snprintf This involved minor changes to private function signatures to take the size of the buffer. * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* spelling fixes (#1561)Scot Breitenfeld2022-03-311-1/+1
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* Merge initial version of selection I/O feature into develop (#1367)Neil Fortner2022-03-261-20/+26
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* Parallel Compression improvements (#1302)jhendersonHDF2022-02-241-276/+1
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* Snprintf2 (#1399)Sean McBride2022-01-281-4/+8
| | | | | | | | | | | | | * Replaced many uses of sprintf with safer snprintf Many very straightforward, but in a few cases added a length parameter to some private functions, because buffer length was otherwise unknowable. * Removed unnecessary use of static on small buffers This improves thread safety. * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* OESS-168: Remove clang warnings. (#1280)H. Joe Lee2021-12-131-8/+8
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* Fixed Spelling Errors (#1166)Scot Breitenfeld2021-12-071-24/+24
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * fixed missed closing of a dataset * fixed missed closing of a dataset * fixed typo in error return * Committing clang-format changes * minor edits * code format * Committing clang-format changes * code format * minor edit * switched from using MPI_count, to actual bytes written for H5FD_mpio_debug rw debugging * Committing clang-format changes * changed size_i in printf to reflect the I/O. * Committing clang-format changes * Fixed seg fault with xlf on BE with -qintsize=8 * fixed error function string * spelling corrections via codespell, added new spell check github actions * Committing clang-format changes * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * Committing clang-format changes * misc * misc * misc * misc * misc * misc * Committing clang-format changes * misc * work around for https://github.com/codespell-project/codespell/issues/2137 * misc * added missing file * misc * misc. * misc * switch to using Codespell with GitHub Actions * misc. * misc. * fixed more sp errors * Fix new typos found by codespell. * fixed proceed with precede * fixed variable in fortran test * fixed minnum * updated spelling list Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
* Minor parallel improvements (#519)Quincey Koziol2021-03-261-31/+36
| | | | | | | * Improve MPI error reporting, handled failed operations in parallel tests more nicely, and clean up MPI_Allreduce for determining whether to break collective I/O * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Update license url part2 (#333)Larry Knox2021-02-171-1/+1
| | | | | | * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING file - files not in src or test.
* Basic alignment with async branch (#115)Quincey Koziol2020-11-231-3/+3
| | | | | | | * Basic alignment with async branch - trivial changes to reduce clutter in overall diff. * Update minor error code to reflect change within library * Update the error output to match library
* Clang-format of source filesAllen Byrne2020-09-301-1261/+1220
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* fix issues from test failkmu2020-01-281-12/+15
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* squash cast warning fixkmu2020-01-231-110/+110
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* merge and fix conflictskmu2020-01-141-1/+1
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| * fix intel compile warningskmu2019-12-041-1/+1
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* | remove unsed var,function,macro, etckmu2019-12-061-4/+4
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* Revert "fix warnings from Intel compiler"kmu2019-11-261-1/+1
| | | | This reverts commit 8b9338ab57eec0cc8fa5a36c44d7b28e52e9a466.
* fix warnings from Intel compilerkmu2019-11-071-1/+1
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* Marked up H5Fget/set_mpi_atomicity() to use the VOL.Dana Robinson2019-09-271-4/+4
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* Fix test issue in testpar/t_dset.c with MPI-2 implementationsJordan Henderson2019-02-071-0/+2
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* HDFFV-10625 -- Implemented a process-0 read and then broadcast for ↵Quincey Koziol2019-01-071-1/+1
| | | | collective read of full (HS_ALL), contiguous, atomic datasets by all the processes in the file communicator.
* HD prefix and whitespaceAllen Byrne2018-08-281-522/+528
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* Corrections for parallel I/O & tests.Quincey Koziol2018-03-211-24/+24
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* Modify t_dset.c in lieu of Parallel Compression changesJordan Henderson2017-08-151-5/+2
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* Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* [svn-r29632] Description:Quincey Koziol2016-04-051-6/+10
| | | | | | | | Align w/revise_chunks branch Tested on: MacOSX/64 10.11.4 (amazon) w/parallel (h5committest forthcoming)
* [svn-r29607] Description:Quincey Koziol2016-04-021-94/+112
| | | | | | | | | Bring "don't filter partial edge chunks" capability from revise_chunks to trunk. Tested on: MacOSX/64 10.11.4 (amazon) w/debug, production & parallel (h5committest forthcoming)
* [svn-r28649] - add new API to toggle collective metadata write.Mohamad Chaarawi2015-12-141-1/+1
| | | | | - set default to FALSE - fix some bugs.
* [svn-r26329] Merge of r26069, r26070, and r26072 from the ↵Dana Robinson2015-02-271-16/+14
| | | | | | | | | | | | | | | | | | features/autotools_rework branch. Removed the configure option that allows selective disabling of individual internal filters (fletcher32, shuffle, etc.). This feature mucked up the code with a lot of #ifdefs, saved very little space, and was not scalable to a general scheme for library size reduction. We've decided to remove the feature while we investigate a more general scheme for decreasing the library size. Part of: HDFFV-9086 Tested on: h5committest
* [svn-r25779] fix bug in parallel tests where a compact dset is being createdMohamad Chaarawi2014-11-041-4/+11
| | | | | | | proportional to the process count without regard to the 64KB limit for compact datasets. tested on jam with parallel.
* [svn-r25651] Fix for: HDFFV-8715Mohamad Chaarawi2014-10-011-1/+6
| | | | | | HDF5_PARAPREFIX is ignored in parallel dense attribute and performance tests. tested on Jam w/ parallel.
* [svn-r24864] Description:Quincey Koziol2014-03-211-87/+36
| | | | | | | | | | | | | | | | | | Remove all traces of MPI-POSIX VFD and GPFS detection/code. Remove remaining traces of stream VFD. Remove testpar/t_posix_compliant test (it's not actually verifying anything). Clean up H5D__mpio_opt_possible() further. Moved environment variable that disables MPI collective operations into MPI-IO VFD (instead of it being in src/H5S.c). A few other small code cleanups. Tested on: Mac OSX/64 10.9.2 (amazon) w/parallel & serial
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