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* 1.8/master (#317)hdf5-1_8_22Larry Knox2021-02-081-1382/+1350
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Don't test ph5diff if tests are disabled. * Correct conditions for parallel builds with and without tests. * Snapshot version 1.8 release 22 (snap5) Update version to 1.8.22-snap6 * TRILAB-192 merging warnings changes from develop * Autotools reconfigure update * Restore page ejects. * Restore page eject chars * Fix orphaned token * Update LT files * Correct extra flags and merge TRILAB-24 * Update release note for CMake warnings * H5repack bug fixes from develop * TRILAB-192 - merge changes from develop Single source, config files, for warnings for both autotools and CMake. Update CMake libraries, tools, tests to use correct flags. * Add missing m4 file * Remove 128bit config check fo 1.8 * TRILAB-192 update LTparse files * A fix in the cleaning up code for datatype when datatype initialization via H5D__init_type() fails. The code to fix the problem is the same as what is done in H5D__open_oid(). * Add missing " and update function calls incorrectly named load_gcc_arguments. Commit changes to gnu-cxxflags to remove unmatched " and to gnu-fflags to not add C warnings flags to H5_FCFLAGS. * TRILAB-192 - cleanup edits and match CMake CXX to autotools * Fix shadowed type * TRILAB-192 correct fortran commands * TRILAB-192 version of std=f2008 special check * Fix shadow variable * Add prefix_relto_examplesdir function to set relative path to h5c++. * TRILAB-192 - parser files cannot handle this warning * Parallel Fortran tests now use the MPI module instead of including mpif.h. * Don't add general warnings flags for unsupported old versions of gcc and g++ (older than gcc/g++ 4.2). Correct gnu-cxxflags to determine warnings flags to be added based on C++ compiler version instead of C compiler version. * Snapshot version 1.8 release 22 (snap6) Update version to 1.8.22-snap7 * TRILAB-244 separate CXX warnings and errors from C * Fix NoFilter build * Move ADD_H5_FLAGS macro from *CompilerFlags.cmake files to config/cmake_ext_mod/HDFMacros.cmake for common use. * Restrict errors to gcc 4.8 and above. * OESS-65 replace szip with aec szip * Correct CMake version * Correct -Werror=unused-variable * Add -Werror= flags to lists displayed in libhdf5.settings. * Fix -Werror=unused-variable * More fixes for unused variable * Resolve warning errors from -Werror= flags: -Werror=bad-function-cast -Werror=bad-function-cast -Werror=implicit-function-declaration -Werror=nested-externs * Remove verbose assignments in smoke_check 3 and 5 functions. * Update to use optimization flags, C++ error flags, and correct libhdf5.settings.in to remove unworkable changes. * Update config/gnu-cxxflags. * Add missing headers * Fix ifort warning flag. Restore AC_DEFUN([PAC_PROG_FC_DEFAULT_REALisDBLE] in m4/aclocal_fc.m4. Add --enable-symbols, --enable-profiling, and --enable-optimization options to autotools configure; all configure flags for --enable-production and --disable-production should match HDF5 1.10 and 1.12 production and debug default flags. * Add github actions file * Correct path * OESS-65 Fix packaging * Update reference name * Correct filename * disable pr action and enable fail fast * Snapshot 1.8.22-snap7 Update version to 1.8.22-snap8. * Correct mingw path * Correct mingw paths * Revise gnu-*flags and cmake/HDF*CompilerFlags.cmake files to add warning flags for GCC compilers version 4.8 and above. Removed files from gnu-warnings that only apply to versions < 4.8. Consolidated warnings from versions < 4.8 that apply to versions >= 4.8 into the 4.8 warnings files. * Update MANIFEST for removal of older warnings files. * Yanked all MPI-1 calls Added batch scripts in bin/batch. * Snapshot 1.8.22-snap8. Update version to 1.8.22-snap9. * Squashed commit of the following: commit 45b0cbc71929930a874e1c09e0770aa64d0ae697 Author: Larry Knox <lrknox@hdfgroup.org> Date: Thu Apr 23 13:14:56 2020 -0500 Add C++ warnings treated as error for autotools builds. commit 6debcddcc766601799d5bd661bd60946f951a07e Author: Larry Knox <lrknox@hdfgroup.org> Date: Fri Jun 19 16:50:03 2020 -0500 Remove tests for develop branch from testh5cc.sh.in. Add @H5_ECXXFLAGS@ to AM_CXXFLAGS. commit fed497e7f207313b2a133d3b68c942b7d7104b90 Author: Larry Knox <lrknox@hdfgroup.org> Date: Fri Jun 12 15:06:39 2020 -0500 Merge pull request #2646 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop * commit '998c6470d78e14228695419c3b514c35ecf3d69e': Remove unnecessary version conditions for Clang compilers. commit 92e52ce5c211bd1d3991a3b8bb67287ac7b652aa Author: Larry Knox <lrknox@hdfgroup.org> Date: Wed Jun 10 18:53:45 2020 -0500 Merge pull request #2639 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop * commit 'a33667faf226f5d8c9633bf537893e8fce1bf1f6': Add c++ to --enable-sanitize-checks option. commit 2e802534fb997b81fa98fdd1c7d97d4310898e0d Author: Larry Knox <lrknox@hdfgroup.org> Date: Wed Jun 10 15:18:36 2020 -0500 Merge pull request #2633 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop * commit '20eab963899841c9a003baebead8e3bc07d9e127': Remove duplicate entries in MANIFEST. Make changes to CMake CompilerFlags.cmake files so extra flags are loaded for non-GNU compilers. Update new clang files to not pick up clang as vendor for pgCC. Add new files to MANIFEST Temporary demotion of 2 -Werror warning flags that fail on macos 10.12 Remove Production flag unknown to Apple clang. commit 96ef60a58a23847a7da89a891f2415055ec2ab60 Author: Larry Knox <lrknox@hdfgroup.org> Date: Mon Jun 8 16:24:49 2020 -0500 Merge pull request #2631 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop * commit 'b942a4d8a3e27317cac50ce37ff5302d477664d8': Clean up code to get clang version in config/linux-gnulibc1 commit 8a7c687da568e8b50b38fa53da1ca63759be6ec4 Author: Larry Knox <lrknox@hdfgroup.org> Date: Mon Jun 8 11:42:37 2020 -0500 Merge pull request #2623 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop * commit 'c7626f79fdee4eee13925e240ef41e61f3367eab': Add flags from config/clang-warnings/*general files to H5 C and CXX flags for all versions of Clang and Clang++ compilers. Switched from cut to awk in testcheck_version.sh.in to avoid dependence on tab vs. " " in version definitions in H5public.h. Add files for adding warning flags for clang compilers in autotools configure. commit db3ef7ff3c1ed79167cecef831501411cff8291f Merge: 5a0f8d7 f9f1310 Author: Larry Knox <lrknox@hdfgroup.org> Date: Fri Jun 19 14:46:22 2020 -0500 Merge branch 'hdf5_1_12' of https://bitbucket.hdfgroup.org/scm/~lrknox/hdf5_lrk into hdf5_1_12 commit 5a0f8d7940ae57b445f545a0abd7e303ce6924ee Author: Larry Knox <lrknox@hdfgroup.org> Date: Wed Jun 10 20:15:41 2020 -0500 Merge pull request #2636 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:HDFFV-11000-update-testh5cc.sh.in-for-version to develop * commit '5c0bd670d6e9919c463fbc05de99e2ba55b0761e': Add tests for all version to H5_NO_DEPRECATED_SYMBOLS section and to section for current version, with and without default API version flags. HDFFV-11000: update-testh5cc.sh.in to test sample versioned functions in HDF5 1.10, 1.12 and develop. * Update configure and Makefile.ins after bin/reconfigure. * Fix MANIFEST * Fix HDFFV-10591 Description: h52gif produced a segfault when a buffer overflow occurred because the data size was corrupted and became very large. This commit added a check on the data size against the buffer size to prevent the segfault. It also added error reporting to h52gif to display an error message instead of silently exiting when the failure occurred. Platforms tested: Linux/64 (jelly) * Snapshot 1.8.22-snap9. Update version to 1.8.22-snap10. * Merge pull request #2686 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop * commit '800f93f7c994f88dfa716746153ded4b1e690e3a': Remove path to szip header file from AM_CPPFLAGS when configure check of libsz fails. Fix for HDFFV-10830. * Regenerate configure. * Merge from 1.10-1.12-dev - LT parse needs update * Incorporate pull request #2693 from develop for the fix to HDFFV-11080: (1) Patch up the file pointer when reading attribute of variable length datatype (2) Test to verify the fix when doing multiple threads (3) Update MANIFEST (4) Add new test to Cmake * Switch bison and flex update of LT files from bin/genltanalyse to bin/genparser, and from automatically updating the LT files whenever reconfigure is run to running only on man<F12>ual command. * Update hl/sr/H5LT files. Add bin/genparser to MANIFEST; remove bin/genltanalyze. * Fix to the merge of PR #2708 for HDFFV-11080 to the 1.8 branch. Need to checkin test/Makefile.in for the new file added. * Fix HDFFV-11120 and HDFFV-11121 (CVE-2018-13870 and CVE-2018-13869) Description: When a buffer overflow occurred because a name length was corrupted and became very large, h5dump produced a segfault on one file and a memcpy parameter overlap on another file. This commit added checks that detect a read pass the end of the buffer to prevent these error conditions. Platforms tested: Linux/64 (jelly) * Fixed typo * Check for header szlib.h only when libsz passes AC_CHECK_LIB, so that H5_HAVE_SALIB_H is not defined when szip is not enabled, to prevent compile failures for incompatible szlib. * HDFFV-11127 - force RTLD_LOCAL in dlopen * spelling * Remove extra parens * Remove unnecessary assignment freom configure.ac. * Add hypen to subrelease regex * Add special case when H5_VERS_SUBRELEASE is 0 * Revert H5_VERS_SUBRELEASE check * The version string has a second use for packaging * MinGW uses "MinGW Makefiles" * Snapshot 1.8.22-snap10. Update version to 1.8.22-snap11. * Merge clang-format changes from develop * remove stray file * Source formatted * Add options to github actions. * Add back file, remove py file * HDFFV-11096 Correct h5dump usage text * Update formating * remove autogen for 1.8 branch * Fix comment whitespace * Change '==' to 'eq' in test script * Merge from develop github updates bin scripts parser updates * Snapshot 1.8.22-snap11. Update version to 1.8.22-snap12. * Merge from 1.10 Comments, whitespace Simple init and if block brackets. Minimal code changes limited to return value and spelling * Update autotools files * Update FD source * More merges from 1.10 comments and inits * Comment fixes * Fix macro argument * Remove autogen file and cache dir * Revert autotools files to previous version * Correct boolean value and missing define * URL and options corrections * revert autoconf files * Fix compile issues with vfd drivers. * Fix HDFS test * Remove extra #endif * Move init above execution * Multiple changes to bring branch up-to-date (#87) Correct TARGET variable and CMake config file location. Add option to allow filter plugins to be built inline. Update CMake tools macros. * hdf5 1 8 release text (#113) * Multiple changes to bring branch up-to-date Correct TARGET variable and CMake config file location. Add option to allow filter plugins to be built inline. Update CMake tools macros. * release text updates - mostly whitespace * Fixed HDFFV-10480 and HDFFV-11159 (#145) * Fixed HDFFV-10480 and HDFFV-11159 Description Checked against buffer size to prevent segfault, in case of data corruption. + HDFFV-11159 CVE-2018-14033 Buffer over-read in H5O_layout_decode + HDFFV-10480 CVE-2018-11206 Buffer over-read in H5O_fill_new[/old]_decode and A user's patch was applied to this previously, but it is redone for a more correct fix, that is the check now accounted for the previous advance of the buffer pointer. Platforms tested: Linux/64 (jelly) * Fixed typo * Update HDF5 1.8 copyright headers with updated copyright URL (#148) * Update URL for COPYING file in copyright headers. * Make fortran copyright headers uniformly spaced. * Update url for Copyright file in c++/src/footer.html. * OESS-98 Update plugin build option (#171) * 1.8 has extra fortran CMake option (#176) * 1.8 has extra fortran CMake option * Update license URL * OESS-98 fix tools test for plugins (#180) * Hdf5 1 8 (#169) * Fixed HDFFV-10480 and HDFFV-11159 Description Checked against buffer size to prevent segfault, in case of data corruption. + HDFFV-11159 CVE-2018-14033 Buffer over-read in H5O_layout_decode + HDFFV-10480 CVE-2018-11206 Buffer over-read in H5O_fill_new[/old]_decode and A user's patch was applied to this previously, but it is redone for a more correct fix, that is the check now accounted for the previous advance of the buffer pointer. Platforms tested: Linux/64 (jelly) * Fixed typo * Fixed HDFFV-11150 Description Replaced an HDassert with a check for null pointer in H5O_dec_rc() to catch null pointer in corrupted data situation. Reversed the fix in svn-r24463 in which a check for null pointer prior to calling H5O_dec_rc() Platforms tested: Linux/64 (jelly) * HDF5 1 8 fix fortran build on macs (#186) * Correct fortran and shared libs option * Fix for no shared fortran build * OESS-98 fix hdf5 link target (#191) * Partial changes to RELEASE.txt for release. (#185) * Partial changes to RELEASE.txt for release. * Update supported and tested platforms. * Update version to 1.8.22-12. * close #195. (#196) * Update HDF5PluginMacros.cmake * Update HDF5PluginMacros.cmake * Update directory for SZ filter in HDF5PluginMacros.cmake. Updates for release: Switch configure default to production mode. Set HDF5_GENERATE_HEADERS to OFF. * Restores maintainer mode in the autotools (#200) Maintainer mode should be enabled in development branches. Also adds helpful commenting. Add bin/switch_maint_mode Disable maintainer mode for release. Fix incomplete merge for stub functions in H5Fdhdfs.c * Update configure for Restores maintainer mode in the autotools (#200). * Update MANIFEST for switch_maint_mode script. * Restores maintainer mode in the autotools (#200) (#203) * Restores maintainer mode in the autotools (#200) Maintainer mode should be enabled in development branches. Also adds helpful commenting. Add bin/switch_maint_mode Disable maintainer mode for release. Fix incomplete merge for stub functions in H5Fdhdfs.c * Update configure for Restores maintainer mode in the autotools (#200). * Update MANIFEST for switch_maint_mode script. Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> * Hdf5 1 8 22 (#212) * Restores maintainer mode in the autotools (#200) Maintainer mode should be enabled in development branches. Also adds helpful commenting. Add bin/switch_maint_mode Disable maintainer mode for release. Fix incomplete merge for stub functions in H5Fdhdfs.c * Update configure for Restores maintainer mode in the autotools (#200). * Update MANIFEST for switch_maint_mode script. Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> * Update so numbers for 1.8.22 release. * Add so numbers changes in Makefile.ins for 1.8.22 release. * Brings ttsafe_attr_vlen.c changes from develop (#214) Fixes exposed pthread problem on Windows. * Update SO numbers for Hdf5 1 8 22 (#215) * Restores maintainer mode in the autotools (#200) Maintainer mode should be enabled in development branches. Also adds helpful commenting. Add bin/switch_maint_mode Disable maintainer mode for release. Fix incomplete merge for stub functions in H5Fdhdfs.c * Update configure for Restores maintainer mode in the autotools (#200). * Update MANIFEST for switch_maint_mode script. * Update so numbers for 1.8.22 release. * Add so numbers changes in Makefile.ins for 1.8.22 release. Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> * Update pkgconfig settings with version - #218 (#223) * Add notice of final HDFF5 1.8 release. Add solaris 64bit alignment issue to "Known Problems". * Update 1.8 final release notice. * Hdf5 1 8 22 (#224) * Restores maintainer mode in the autotools (#200) Maintainer mode should be enabled in development branches. Also adds helpful commenting. Add bin/switch_maint_mode Disable maintainer mode for release. Fix incomplete merge for stub functions in H5Fdhdfs.c * Update configure for Restores maintainer mode in the autotools (#200). * Update MANIFEST for switch_maint_mode script. * Update so numbers for 1.8.22 release. * Add so numbers changes in Makefile.ins for 1.8.22 release. * Update pkgconfig settings with version - #218 (#223) * Add notice of final HDFF5 1.8 release. Add solaris 64bit alignment issue to "Known Problems". * Update 1.8 final release notice. Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> * Update CMake/HDF5Examples version in bin/release * Update CMake/HDF5Examples version number in bin/release (#225) * Restores maintainer mode in the autotools (#200) Maintainer mode should be enabled in development branches. Also adds helpful commenting. Add bin/switch_maint_mode Disable maintainer mode for release. Fix incomplete merge for stub functions in H5Fdhdfs.c * Update configure for Restores maintainer mode in the autotools (#200). * Update MANIFEST for switch_maint_mode script. * Update so numbers for 1.8.22 release. * Add so numbers changes in Makefile.ins for 1.8.22 release. * Update pkgconfig settings with version - #218 (#223) * Add notice of final HDFF5 1.8 release. Add solaris 64bit alignment issue to "Known Problems". * Update 1.8 final release notice. * Update CMake/HDF5Examples version in bin/release Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> * Fixed typo in an error message. (#228) * Fixed typo in an error message. (#227) * Remove duplicate setting (#239) * Bring 3 small changes from Hdf5 1.8 to 1.8.22 (#241) * Restores maintainer mode in the autotools (#200) Maintainer mode should be enabled in development branches. Also adds helpful commenting. Add bin/switch_maint_mode Disable maintainer mode for release. Fix incomplete merge for stub functions in H5Fdhdfs.c * Update configure for Restores maintainer mode in the autotools (#200). * Update MANIFEST for switch_maint_mode script. * Update so numbers for 1.8.22 release. * Add so numbers changes in Makefile.ins for 1.8.22 release. * Update pkgconfig settings with version - #218 (#223) * Add notice of final HDFF5 1.8 release. Add solaris 64bit alignment issue to "Known Problems". * Update 1.8 final release notice. * Update CMake/HDF5Examples version in bin/release * Fixed typo in an error message. (#227) * Remove duplicate setting (#239) Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com> * Stat st blocks fix 1822 (#251) * Restores maintainer mode in the autotools (#200) Maintainer mode should be enabled in development branches. Also adds helpful commenting. Add bin/switch_maint_mode Disable maintainer mode for release. Fix incomplete merge for stub functions in H5Fdhdfs.c * Update configure for Restores maintainer mode in the autotools (#200). * Update MANIFEST for switch_maint_mode script. * Update so numbers for 1.8.22 release. * Add so numbers changes in Makefile.ins for 1.8.22 release. * Update pkgconfig settings with version - #218 (#223) * Add notice of final HDFF5 1.8 release. Add solaris 64bit alignment issue to "Known Problems". * Update 1.8 final release notice. * Update CMake/HDF5Examples version in bin/release * Fixed typo in an error message. (#227) * Remove duplicate setting (#239) * Fixes Autotools detection of the st_blocks field in stat (#246) * Fixes Autotools detection of the st_blocks field in stat The Autotools and CMake will now both correctly determine if the stat struct has the st_blocks field and set H5_HAVE_STAT_ST_BLOCKS appropriately. * Fixes a typo in configure.ac * Restore lines in RELEASE.txt. Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com> * Stat st blocks fix 1822 (#256) * Restores maintainer mode in the autotools (#200) Maintainer mode should be enabled in development branches. Also adds helpful commenting. Add bin/switch_maint_mode Disable maintainer mode for release. Fix incomplete merge for stub functions in H5Fdhdfs.c * Update configure for Restores maintainer mode in the autotools (#200). * Update MANIFEST for switch_maint_mode script. * Update so numbers for 1.8.22 release. * Add so numbers changes in Makefile.ins for 1.8.22 release. * Update pkgconfig settings with version - #218 (#223) * Add notice of final HDFF5 1.8 release. Add solaris 64bit alignment issue to "Known Problems". * Update 1.8 final release notice. * Update CMake/HDF5Examples version in bin/release * Fixed typo in an error message. (#227) * Remove duplicate setting (#239) * Fixes Autotools detection of the st_blocks field in stat (#246) * Fixes Autotools detection of the st_blocks field in stat The Autotools and CMake will now both correctly determine if the stat struct has the st_blocks field and set H5_HAVE_STAT_ST_BLOCKS appropriately. * Fixes a typo in configure.ac * Restore lines in RELEASE.txt. * Updated configure with reconfigure. Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com> * RELEASE.txt cleanup. * Hdf5 1 8 22 (#261) * Restores maintainer mode in the autotools (#200) Maintainer mode should be enabled in development branches. Also adds helpful commenting. Add bin/switch_maint_mode Disable maintainer mode for release. Fix incomplete merge for stub functions in H5Fdhdfs.c * Update configure for Restores maintainer mode in the autotools (#200). * Update MANIFEST for switch_maint_mode script. * Update so numbers for 1.8.22 release. * Add so numbers changes in Makefile.ins for 1.8.22 release. * Update pkgconfig settings with version - #218 (#223) * Add notice of final HDFF5 1.8 release. Add solaris 64bit alignment issue to "Known Problems". * Update 1.8 final release notice. * Update CMake/HDF5Examples version in bin/release * Fixed typo in an error message. (#227) * Remove duplicate setting (#239) * RELEASE.txt cleanup. Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com> * Add macOS Big Sur to tested machines, also missing entries for macOS 10.13 and 10.14. * )Update version. * Hdf5 1 8 22 (#266) * Restores maintainer mode in the autotools (#200) Maintainer mode should be enabled in development branches. Also adds helpful commenting. Add bin/switch_maint_mode Disable maintainer mode for release. Fix incomplete merge for stub functions in H5Fdhdfs.c * Update configure for Restores maintainer mode in the autotools (#200). * Update MANIFEST for switch_maint_mode script. * Update so numbers for 1.8.22 release. * Add so numbers changes in Makefile.ins for 1.8.22 release. * Update pkgconfig settings with version - #218 (#223) * Add notice of final HDFF5 1.8 release. Add solaris 64bit alignment issue to "Known Problems". * Update 1.8 final release notice. * Update CMake/HDF5Examples version in bin/release * Fixed typo in an error message. (#227) * Remove duplicate setting (#239) * RELEASE.txt cleanup. * Add macOS Big Sur to tested machines, also missing entries for macOS 10.13 and 10.14. * )Update version. Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com> * Reverts lock/unlock callback signature to 1.8.21 version (#254) * Reverts lock/unlock callback signature to 1.8.21 version This callback is unused in 1.8. The ros3 and hdfs VFDs are the only VFDs that have the lock callback implemented and that is just as no-op stubs. These stubs were removed so the callbacks are now NULL pointers, like the other VFDs in 1.8. * Trivial whitespace fix * Update version to 1.8.22-14. * Hdf5 1 8 22 - Reverts lock/unlock callback signature to 1.8.21 version (#267) * Restores maintainer mode in the autotools (#200) Maintainer mode should be enabled in development branches. Also adds helpful commenting. Add bin/switch_maint_mode Disable maintainer mode for release. Fix incomplete merge for stub functions in H5Fdhdfs.c * Update configure for Restores maintainer mode in the autotools (#200). * Update MANIFEST for switch_maint_mode script. * Update so numbers for 1.8.22 release. * Add so numbers changes in Makefile.ins for 1.8.22 release. * Update pkgconfig settings with version - #218 (#223) * Add notice of final HDFF5 1.8 release. Add solaris 64bit alignment issue to "Known Problems". * Update 1.8 final release notice. * Update CMake/HDF5Examples version in bin/release * Fixed typo in an error message. (#227) * Remove duplicate setting (#239) * RELEASE.txt cleanup. * Add macOS Big Sur to tested machines, also missing entries for macOS 10.13 and 10.14. * )Update version. * Reverts lock/unlock callback signature to 1.8.21 version (#254) * Reverts lock/unlock callback signature to 1.8.21 version This callback is unused in 1.8. The ros3 and hdfs VFDs are the only VFDs that have the lock callback implemented and that is just as no-op stubs. These stubs were removed so the callbacks are now NULL pointers, like the other VFDs in 1.8. * Trivial whitespace fix * Update version to 1.8.22-14. Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com> * Update version in H5public.h * Hdf5 1 8 22 (#269) * Restores maintainer mode in the autotools (#200) Maintainer mode should be enabled in development branches. Also adds helpful commenting. Add bin/switch_maint_mode Disable maintainer mode for release. Fix incomplete merge for stub functions in H5Fdhdfs.c * Update configure for Restores maintainer mode in the autotools (#200). * Update MANIFEST for switch_maint_mode script. * Update so numbers for 1.8.22 release. * Add so numbers changes in Makefile.ins for 1.8.22 release. * Update pkgconfig settings with version - #218 (#223) * Add notice of final HDFF5 1.8 release. Add solaris 64bit alignment issue to "Known Problems". * Update 1.8 final release notice. * Update CMake/HDF5Examples version in bin/release * Fixed typo in an error message. (#227) * Remove duplicate setting (#239) * RELEASE.txt cleanup. * Add macOS Big Sur to tested machines, also missing entries for macOS 10.13 and 10.14. * )Update version. * Reverts lock/unlock callback signature to 1.8.21 version (#254) * Reverts lock/unlock callback signature to 1.8.21 version This callback is unused in 1.8. The ros3 and hdfs VFDs are the only VFDs that have the lock callback implemented and that is just as no-op stubs. These stubs were removed so the callbacks are now NULL pointers, like the other VFDs in 1.8. * Trivial whitespace fix * Update version to 1.8.22-14. * Update version in H5public.h Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com> * Set version 1.8.22 for release. * dd RELEASE.txt entry for HDFFV-10741. * Hdf5 1 8 22 (#279) * Restores maintainer mode in the autotools (#200) Maintainer mode should be enabled in development branches. Also adds helpful commenting. Add bin/switch_maint_mode Disable maintainer mode for release. Fix incomplete merge for stub functions in H5Fdhdfs.c * Update configure for Restores maintainer mode in the autotools (#200). * Update MANIFEST for switch_maint_mode script. * Update so numbers for 1.8.22 release. * Add so numbers changes in Makefile.ins for 1.8.22 release. * Update pkgconfig settings with version - #218 (#223) * Add notice of final HDFF5 1.8 release. Add solaris 64bit alignment issue to "Known Problems". * Update 1.8 final release notice. * Update CMake/HDF5Examples version in bin/release * Fixed typo in an error message. (#227) * Remove duplicate setting (#239) * RELEASE.txt cleanup. * Add macOS Big Sur to tested machines, also missing entries for macOS 10.13 and 10.14. * )Update version. * Reverts lock/unlock callback signature to 1.8.21 version (#254) * Reverts lock/unlock callback signature to 1.8.21 version This callback is unused in 1.8. The ros3 and hdfs VFDs are the only VFDs that have the lock callback implemented and that is just as no-op stubs. These stubs were removed so the callbacks are now NULL pointers, like the other VFDs in 1.8. * Trivial whitespace fix * Update version to 1.8.22-14. * Update version in H5public.h * Set version 1.8.22 for release. * dd RELEASE.txt entry for HDFFV-10741. Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com> * Improve performance of multiple calls to H5Sget_select_elem_pointlist (#270) (#277) * Cache the pointer to the next point to process after the last call to H5S__get_select_elem_pointlist. This allows the normal process of iterating over the points in batches to be much more efficient, as the library does not need to traverse the entirety of the preceding points every time the funciton is re-entered. * Update RELEASE.txt for point selection iteration performance fix. * Hdf5 1 8 22 (#281) * Restores maintainer mode in the autotools (#200) Maintainer mode should be enabled in development branches. Also adds helpful commenting. Add bin/switch_maint_mode Disable maintainer mode for release. Fix incomplete merge for stub functions in H5Fdhdfs.c * Update configure for Restores maintainer mode in the autotools (#200). * Update MANIFEST for switch_maint_mode script. * Update so numbers for 1.8.22 release. * Add so numbers changes in Makefile.ins for 1.8.22 release. * Update pkgconfig settings with version - #218 (#223) * Add notice of final HDFF5 1.8 release. Add solaris 64bit alignment issue to "Known Problems". * Update 1.8 final release notice. * Update CMake/HDF5Examples version in bin/release * Fixed typo in an error message. (#227) * Remove duplicate setting (#239) * RELEASE.txt cleanup. * Add macOS Big Sur to tested machines, also missing entries for macOS 10.13 and 10.14. * )Update version. * Reverts lock/unlock callback signature to 1.8.21 version (#254) * Reverts lock/unlock callback signature to 1.8.21 version This callback is unused in 1.8. The ros3 and hdfs VFDs are the only VFDs that have the lock callback implemented and that is just as no-op stubs. These stubs were removed so the callbacks are now NULL pointers, like the other VFDs in 1.8. * Trivial whitespace fix * Update version to 1.8.22-14. * Update version in H5public.h * Set version 1.8.22 for release. * dd RELEASE.txt entry for HDFFV-10741. * Improve performance of multiple calls to H5Sget_select_elem_pointlist (#270) (#277) * Cache the pointer to the next point to process after the last call to H5S__get_select_elem_pointlist. This allows the normal process of iterating over the points in batches to be much more efficient, as the library does not need to traverse the entirety of the preceding points every time the funciton is re-entered. * Update RELEASE.txt for point selection iteration performance fix. Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com> Co-authored-by: Neil Fortner <nfortne2@hdfgroup.org> * Hdf5 1 8 22 (#284) * Fixed typo in an error message. * Updated for HDFFV-11150, HDFFV-10480, and HDFFV-11159 * Update "Support for New Platforms and Compilers" section in RELEASE.txt; add check_version workaround for binary compatibility to "Known Problems". * Add SUSE Linux to tested platforms. * Update numbers in config/lt_vers.am and run bin/reconfigure for so numbers. * Update version in 3 files missed by merge. Co-authored-by: Allen Byrne <byrn@hdfgroup.org> Co-authored-by: Vailin Choi <vchoi@hdfgroup.org> Co-authored-by: vchoi <vchoi@jelly.ad.hdfgroup.org> Co-authored-by: hdftest <hdftest@hdfgroup.org> Co-authored-by: Jordan Henderson <jhenderson@hdfgroup.org> Co-authored-by: Dana Robinson <derobins@hdfgroup.org> Co-authored-by: Binh-Minh Ribler <bmribler@hdfgroup.org> Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com> Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> Co-authored-by: Neil Fortner <nfortne2@hdfgroup.org>
* Change copyright headers to replace url referring to file to belrknox2017-05-161-6/+4
| | | | removed and replace it with new url for COPYING file.
* [svn-r26395] Merges r26329 from trunkDana Robinson2015-03-091-16/+14
| | | | | | | | | | | | | | Removed the configure option that allows selective disabling of individual internal filters (fletcher32, shuffle, etc.). This feature mucked up the code with a lot of #ifdefs, saved very little space and was not scalable to a general scheme for library size reduction. We've decided to remove the feature while we investigate a more general scheme for decreasing the library size. Fixes: HDFFV-9086 Tested on: h5committest
* [svn-r25780] merge 25779 from trunk.Mohamad Chaarawi2014-11-041-4/+11
| | | | | | fix bug in parallel tests where a compact dset is being created proportional to the process count without regard to the 64KB limit for compact datasets.
* [svn-r25682] bring 25651 and 25659 from trunk.Mohamad Chaarawi2014-10-071-1/+6
| | | | | Fix for: HDFFV-8715 HDF5_PARAPREFIX is ignored in parallel dense attribute and performance tests.
* [svn-r25497] Description:Quincey Koziol2014-07-301-62/+62
| | | | | | | | | | Merge changes that correspond to the 64-bit ID changes (without the actual switch to 64-bit IDs) to the 1.8 release branch. (Plus a few minor cleanups and alignments with the trunk that aren't on the branch) Tested on: Mac OSX/64 10.9.4 (amazon) w/C++ & FORTRAN (h5committested on branch already for a week)
* [svn-r24878] Description:Quincey Koziol2014-03-241-87/+36
| | | | | | | | | | | | | | | | | | | | | Bring r24864 from trunk to 1.8 branch: Remove all traces of MPI-POSIX VFD and GPFS detection/code. Remove remaining traces of stream VFD. Remove testpar/t_posix_compliant test (it's not actually verifying anything). Clean up H5D__mpio_opt_possible() further. Moved environment variable that disables MPI collective operations into MPI-IO VFD (instead of it being in src/H5S.c). A few other small code cleanups. Tested on: Mac OSX/64 10.9.2 (amazon) w/parallel & serial (daily tested on trunk)
* [svn-r24785] Description:Quincey Koziol2014-03-121-31/+393
| | | | | | | | | | | | | Bring r24769 & r24772 from trunk to 1.8 branch: Check in Mohamad's changes to support collective I/O on point selections, along with some other minor cleanups. Correct some dynamically sized arrays that fail on Windows. Tested on: Mac OSX/64 10.9.2 (amazon) w/parallel (And has been through the daily test regime on the trunk)
* [svn-r24614] Bring 24612 from trunk:Mohamad Chaarawi2014-01-061-16/+15
| | | | | | | | fix bugs in parallel tests exposed in corner cases when running with 1 or 2 processes. First bug is in testpar/t_mdset.c, where the test reports an error in addition to skipping the test if there are less than three procs. Fix to just skip the test. Second bug is in testpar/t_dset.c in actual_io_mode tests, where incorrect expected value for IO mode was set if the number of procs running the test is 1. tested with h5committest.
* [svn-r23545] Description:Quincey Koziol2013-04-041-1/+1
| | | | | | | | | Bring r23544 from trunk to 1.8 branch: Correct API version mistake w/H5Acreate -> H5Acreate2 Tested on: Mac OSX/64 10.8.3 (amazon) w/parallel
* [svn-r23535] Description:Quincey Koziol2013-04-031-0/+60
| | | | | | | | | | | Bring r23529 from trunk to 1.8 branch: Stop aliasing property to indicate internal collective metadata operations with property to perform collective raw data operations from the application. Tested on: Mac OSX/64 10.8.3 (amazon) w/parallel (daily tests on trunk)
* [svn-r23011] Purpose:Jonathan Kim2012-11-051-59/+45
| | | | | | | | | | | | HDFFV-8146 - Remove "multi-chunk IO without optimization" sub-feature from MPI I/O optimization for chunked dataset feature Description: The “multi-chunk IO without optimization” feature is removed and made the related xfer property (H5FD_MPIO_CHUNK_MULTI_IO) go directly to “multi-chunk-io” feature. Also update/fix/cleanup testings (chunk collective IO and actual chunk opt mode) accordingly. Merged from HDF5 trunk r22992. Tested: jam-pp (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), fred (mac64-LE), linew (solaris-BE), koala-pp, wallby-pp, cmake (jam-pp), Windows (32-LE cmake)
* [svn-r22783] Purpose:Jonathan Kim2012-09-181-1/+1
| | | | | | | | | | | HDFFV-8143 Provide a routine(s) for telling the user why the library broke collective data access Description: Changed to use H5Dopen2() instead of H5Dopen(), which caught by daily test on jam. This is based on previous commit r22780. Tested: jam-pp (linux32-LE)
* [svn-r22780] Purpose:Jonathan Kim2012-09-171-0/+676
| | | | | | | | | | | | | | | | | | | | | HDFFV-8143 Provide a routine(s) for telling the user why the library broke collective data access Description: Added H5Pget_mpio_no_collective_cause() function that retrive reasons why the collective I/O was broken during Read/Write IO access. Reasons to break collective I/O: - SET_INDEPENDENT - DATATYPE_CONVERSION - DATA_TRANSFORMS - MPIPOSIX - NOT_SIMPLE_OR_SCALAR_DATASPACES (NULL Space) - POINT_SELECTIONS - NOT_CONTIGUOUS_OR_CHUNKED_DATASET (Compact or External-Storage) - FILTERS Merged from HDF5 trunk r22735, r22741 , 22743, 22744, 22763. Tested: jam-pp (linux32-LE), koala-pp (linux64-LE), wallaby-pp
* [svn-r22652] bring 22651 to branchMohamad Chaarawi2012-08-091-1/+5
| | | | fix a bug that would skip or include the parallel atomicity test with cmd arguments -o or -x
* [svn-r22291] Description:Quincey Koziol2012-04-171-1/+1
| | | | | | | | | | Bring r22287 from trunk to 1.8 branch: Clean up more FUNC_ENTER/FUNC_LEAVE macros and move H5D & H5T code toward the final design (as exemplified by the H5EA & H5FA code). Tested on: Mac OSX/64 10.7.3 (amazon) w/debug & parallel
* [svn-r22157] Merge the atomicity routines from the trunkMohamad Chaarawi2012-03-271-0/+325
|
* [svn-r21533] Description:Quincey Koziol2011-10-121-0/+549
| | | | | | | | | Bring r21442 and r21529 from trunk to 1.8 branch: Add new API routines for querying if collective raw data I/O was actually performed collectively. Tested: Linux/32 2.6 (jam) (h5committested on trunk)
* [svn-r15629] Description:Quincey Koziol2008-09-161-1/+1
| | | | | | | | | | | | | Remove trailing whitespace from C/C++ source files, with the following script: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Tested on: Mac OS X/32 10.5.5 (amazon) No need for h5committest, just whitespace changes...
* [svn-r14205] Description:Quincey Koziol2007-10-121-1/+1
| | | | | | | Fix typo from recent changes Tested on: None - just eyeballed.
* [svn-r14199] Description:Quincey Koziol2007-10-111-240/+240
| | | | | | | | | | | | | | | | | | | | | Add H5Dcreate to API versioned routines, replacing internal usage with H5Dcreate2 Fix thread-safe error stack initialization for API versioned error stack printing routines. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14193] Description:Quincey Koziol2007-10-081-12/+12
| | | | | | | | | | | | | | | | | | | Make H5Dopen versioned and change all internal usage to use H5Dopen2 Add simple regression test for H5Dopen1 Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14192] Description:Quincey Koziol2007-10-081-17/+17
| | | | | | | | | | | | | | | | | | Deprecate H5Dextend in favor of H5Dset_extent (without using API versioning, due to changed behavior) and switch internal usage to H5Dset_extent Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14098] Description:Quincey Koziol2007-08-211-12/+12
| | | | | | | | Clean up a few remaining API compatibility issues in the H5E API for parallel configurations Tested on: FreeBSD/64 6.2 (liberty) w/parallel
* [svn-r14096] There're 3 changes in this checkin as below:Raymond Lu2007-08-201-0/+212
| | | | | | | | | | | | | | | | | | 1. In H5Dwrite and H5Dread, let the data buffer point to a fake address if the application passes in an empty buffer. This is mainly for MPIO programs that some processes may not have any data to write or read but still participate the I/O. This solution solves some MPI's problem like the ChaMPIon on tungsten which doesn't support empty buffer. 2. The ChaMPIon on tungsten doesn't support complex derived MPI data type correctly and collective I/O when some processes don't have any data to write or read correctly. Detect the compiler "cmpicc" in the system-specific config file and set the variables for these two cases to false. The PHDF5 library already has set up a way to switch collective chunked I/O to independent under these two cases. 3. A bug fix - During the work of the optimization for compound data I/O, the case for switching collective chunked I/O to independent I/O was leftout. Fixed it by adding I/O caching to it in H5D_multi_chunk_collective_io in H5Dmpio.c. Tested on tungsten, cobalt, and kagiso for parallel; on linew and smirom for serial.
* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-071-2/+3
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
* [svn-r12554] New tests have been added to test the correctness of ↵MuQun Yang2006-08-091-0/+56
| | | | | | | | independent IO with file setview. To activite this test, add the command option -i. For example, at IBM AIX, type "poe testphdf5 -i" will test the library with independent IO with file setview. It simply replaces all the collective IO tests with independent IO with file setview.
* [svn-r12396] Purpose:Albert Cheng2006-06-011-1/+1
| | | | | | | | | | | | | | Bug fix. Description: Sometimes the parallel prefix is given in the form of nfs:/mnt/pfs which if given to a non-MPIO VFD like the default H5Fcreate, it would fail. Called h5_rmprefix which would return the non-prefix component part of the file name which would be okay for the default H5Fcreate and such. Platforms tested: Tested in heping parallel.
* [svn-r11245] Purpose:Quincey Koziol2005-08-131-1/+1
| | | | | | | | | | | | | | | | | | | | Code cleanup Description: Trim trailing whitespace, which is making 'diff'ing the two branches difficult. Solution: Ran this script in each directory: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r9727] Purpose:Quincey Koziol2004-12-291-22/+23
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-) Description: Generally speaking, this is the "signed->unsigned" change to selections. However, in the process of merging code back, things got stickier and stickier until I ended up doing a big "sync the two branches up" operation. So... I brought back all the "infrastructure" fixes from the development branch to the release branch (which I think were actually making some improvement in performance) as well as fixed several bugs which had been fixed in one branch, but not the other. I've also tagged the repository before making this checkin with the label "before_signed_unsigned_changes". Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel & fphdf5 FreeBSD 4.10 (sleipnir) w/threadsafe FreeBSD 4.10 (sleipnir) w/backward compatibility Solaris 2.7 (arabica) w/"purify options" Solaris 2.8 (sol) w/FORTRAN & C++ AIX 5.x (copper) w/parallel & FORTRAN IRIX64 6.5 (modi4) w/FORTRAN Linux 2.4 (heping) w/FORTRAN & C++ Misc. update:
* [svn-r9358] Purpose:Quincey Koziol2004-10-041-18/+176
| | | | | | | | | | | | | | | Bug fix Description: Relax restrictions on parallel I/O to allow compressed, chunked datasets to be read in parallel (collective access will be degraded to independent access, but will retrieve the information still). Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Solaris 2.7 (arabica) IRIX64 6.5 (modi4) h5committest
* [svn-r9309] Purpose:Albert Cheng2004-09-221-12/+12
| | | | | | | | | | | | | | | Cleanup Description: Remove old hack for H5Eget_auto() which is not needed any more. Reverse H5E_set_auto_stack(H5EDEFAULT,...) back to previous code of H5E_set_auto(...). Same for H5E_get_auto_stack. Platforms tested: Only tested in Eirene PP as the change is pretty straight forward. Misc. update:
* [svn-r9183] Purpose: New featureRaymond Lu2004-09-011-12/+12
| | | | | | | | | | | | Description: Restore 6 old error API functions back to the library to be backward compatible with v1.6. They are H5Epush, H5Eprint, H5Ewalk, H5Eclear, H5Eset_auto, H5Eget_auto. These functions do not have error stack as parameter. Solution: Internally, these functions use default error stack. Platforms tested: h5committest and fuss. Misc. update: RELEASE.txt
* [svn-r8867] Purpose:Quincey Koziol2004-07-131-2/+168
| | | | | | | | | | | | | | | | | | | Bug fix Description: Fix error in chunked dataset I/O where data written out wasn't read correctly from a chunked, extendible dataset after the dataset was extended. Also, fix parallel I/O tests to gather error results from all processes, in order to detect errors that only occur on one process. Solution: Bypass chunk cache for reads as well as writes, if parallel I/O driver is used and file is opened for writing. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r8294] Purpose:Albert Cheng2004-04-011-8/+24
| | | | | | | | | | | | | feature Description: Change testphdf5 to use the common test program syntax. Needed to change the protocols of all test programs to fit the requirement of the common test syntax. Platforms tested: "h5committested". Also tested in sol with PP mode.
* [svn-r8096] Purpose:Albert Cheng2004-01-221-76/+40
| | | | | | | | | | | | | | | | Improvement. Description: Complete change of the verbose control to use the routines provided by the test/libh5test.a. Also put in a temporary fix for the H5Eset_auto() and H5Eget_auto() so that the Compat code are isolated in one place rather than all over the source file. Platforms tested: Tested in Eirene (parallel). Misc. update:
* [svn-r7923] Purpose:Quincey Koziol2003-12-101-0/+36
| | | | | | | | | | | | Bug fix Description: Clean up a couple more 1.6 compat bugs that showed up when the library was compiled with parallel support. Platforms tested: FreeBSD 4.9 (sleipnir) w/parallel & 1.6 compat config not tested with h5committest
* [svn-r7265] *** empty log message ***Raymond Lu2003-07-261-12/+12
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* [svn-r7181] Purpose:Quincey Koziol2003-07-071-8/+0
| | | | | | | | | | | Version update Description: Removed 1.4 compatibility code in the library. Platforms tested: FreeBSD 4.8 (sleipnir) h5committest
* [svn-r7015] Purpose:Quincey Koziol2003-06-101-2/+4
| | | | | | | Comment cleanup Description: Updated comments for recent changes.
* [svn-r7001] Purpose:Quincey Koziol2003-06-091-0/+8
| | | | | | | | | | | Code cleanup Description: Reduce warnings when compiled with --enable_hdf5v1_4 compatibility switch. Platforms tested: FreeBSD 4.8 (sleipnir) h5committest
* [svn-r6975] Purpose:Quincey Koziol2003-06-051-0/+432
| | | | | | | | | | | Bug fix Description: Don't attempt to perform collective I/O on chunked datasets. Platforms tested: FreeBSD 4.8 (sleipnir) w/parallel h5committested
* [svn-r6961] Purpose:Quincey Koziol2003-06-041-2/+2
| | | | | | | | | | | | | | | | Bug fix Description: An earlier checkin changed some of the assumptions about single block hyperslabs, causing them to fail in odd ways. Solution: Fix errors with single block hyperslabs by keying off of count==1 instead of stride==1. Platforms tested: FreeBSD 4.8 (sleipnir) w/parallel h5committested
* [svn-r6795] Purpose:Bill Wendling2003-05-051-6/+12
| | | | | | | | | | | | | | | | Feature Add Description: Added knob so that the programmer can enable or disable GPFS hints during runtime instead of having it only enabled at configure/compile time. Some of the public APIs were changed to add an extra parameter for this option... Platforms tested: Blue (LLNL). It only affects the MPI/POSIX driver, so no need to test it on non-GPFS platforms. Misc. update:
* [svn-r6539] Purpose:Bill Wendling2003-03-311-0/+14
| | | | | | | | | | | | Update Description: Updated (and in some cases added) the copyright statement. Platforms tested: Linux (Comment changes...only tested if they compile) Misc. update:
* [svn-r6387] Purpose:Quincey Koziol2003-02-101-2/+19
| | | | | | | | | | | | | | | | | | | | | | | | | | | Bug Fix Description: Metadata cache in parallel I/O can cause hangs in applications which perform independent I/O on chunked datasets, because the metadata cache can attempt to flush out dirty metadata from only a single process, instead of collectively from all processes. Solution: Pass a dataset transfer property list down from every API function which could possibly trigger metadata I/O. Then, split the metadata cache into two sets of entries to allow dirty metadata to be set aside when a hash table collision occurs during independent I/O. Platforms tested: Tested h5committest {arabica (fortran), eirene (fortran, C++) modi4 (parallel, fortran)} FreeBSD 4.7 (sleipnir) serial & parallel Misc. update: Updated release_docs/RELEASE
* [svn-r6055] Purpose:Quincey Koziol2002-11-051-6/+79
| | | | | | | | | | | | | | New feature Description: Add support for scalar dataspaces in parallel I/O. Platforms tested: Tested h5committest {arabica (fortran), eirene (fortran, C++) modi4 (parallel, fortran)} Also, FreeBSD 4.7 (sleipnir) serial & parallel Misc. update: Update release_docs/RELEASE for bug fixes, new features, etc.
* [svn-r6043] Purpose:Quincey Koziol2002-10-291-59/+121
| | | | | | | | | | | | Bug fix Description: I/O using "none" selections in parallel wasn't working correctly. Also, add serial "none" selection test. Platforms tested: Tested h5committest {arabica (fortran), eirene (fortran, C++) modi4 (parallel, fortran)}
* [svn-r5896] Purpose:Quincey Koziol2002-08-271-1/+1
| | | | | | | | | | | Code cleanup Description: Cleaned up some compiler warnings. Platforms tested: FreeBSD 4.6 (sleipnir) w/serial & parallel. Will be testing on IRIX64 6.5 (modi4) in serial & parallel shortly.
* [svn-r5679] Purpose:Quincey Koziol2002-06-191-0/+2
| | | | | | | | | | | Code cleanup Description: Changed ifdef name from "VERBOSE" to "BARRIER_CHECKS", to better describe what it affects. Platforms tested: IRIX64 6.5 (modi4) w/parallel
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