| Commit message (Collapse) | Author | Age | Files | Lines |
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Merge HDF5 1.10.8 release files to 1.10/master
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merge_func_enter_vol
Plus initial steps toward merging API context push into FUNC_ENTER_API* macros
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in coll_write_test().
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hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
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Remove all traces of MPI-POSIX VFD and GPFS detection/code.
Remove remaining traces of stream VFD.
Remove testpar/t_posix_compliant test (it's not actually verifying anything).
Clean up H5D__mpio_opt_possible() further.
Moved environment variable that disables MPI collective operations into
MPI-IO VFD (instead of it being in src/H5S.c).
A few other small code cleanups.
Tested on:
Mac OSX/64 10.9.2 (amazon) w/parallel & serial
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Correct tests to use native datatypes consistently, and also to use
"normal" methods for performing collective I/O. Also, minor cleanups for
zeroing out buffers, etc.
Tested on:
AIX/64 6.? (bp) w/parallel
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Clean up some compiler warnings.
Tested on:
Linux 2.6/64 (abe) w/parallel
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Change use of API wrapper to using versioned API routine (i.e. H5Eprint
-> H5Eprint2)
Tested on:
None, eyeballed only, too simple
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Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
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Remove another call to H5E_clear_stack() from within the library.
Clean up lots of compiler warnings.
Tested on:
Mac OS X/32 10.5.6 (amazon)
(followup on other platforms forthcoming)
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Remove trailing whitespace from C/C++ source files, with the following
script:
foreach f (*.[ch] *.cpp)
sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f
end
Tested on:
Mac OS X/32 10.5.5 (amazon)
No need for h5committest, just whitespace changes...
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Add H5Dcreate to API versioned routines, replacing internal usage with
H5Dcreate2
Fix thread-safe error stack initialization for API versioned error
stack printing routines.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
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Make H5Dopen versioned and change all internal usage to use H5Dopen2
Add simple regression test for H5Dopen1
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
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copyright notice.
Tested platform:
Kagiso only since it is only a comment block change. If it works in one
machine, it should work in all, I hope. Still need to check the parallel
build on copper.
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independent IO with file setview.
To activite this test,
add the command option -i.
For example, at IBM AIX, type "poe testphdf5 -i" will test the library with independent IO with file setview. It simply replaces all the collective IO tests with independent IO with file setview.
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Code cleanup
Description:
Trim trailing whitespace in Makefile.am and C/C++ source files to make
diffing changes easier.
Platforms tested:
None necessary, whitespace only change
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change the array size of collective chunking features of parallel tests.
Description:
Previously array size for collective optimization tests
including
cchunk1,
cchunk2,
cchunk3,
cchunk4,
ccontw,
ccontr,
cschunkw,
cschunkr,
ccchunkw,
ccchunkr
are fixed,
They are only valid for some good number of processors(1,2,3,4,6,8,12,16,24,32,48 etc).
Recently there are more requests for parallel tests to be valid on some odd number of processes such as 5,7,11,13 etc.
Solution:
I change the array size to be dynamic rather than static. Now the fastest change array size is a function of mpi_size. dim2 = constant *mpi_size. After some tunings, theoretically the above tests should be valid for any number of processors. However, other parallel tests still need to be tuned.
To verify the correctness of these tests, using mpirun -np 5 ./testphdf5 -b cchunk1 at heping.
Platforms tested:
h5committest(shanti is refused to be connected)
at heping, 5 and 7 processes are used to verify the correctness.
Misc. update:
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Adding comments and code clean-up for code that tests collective irregular selection
Description:
For better maintenance in the future, Add comments to list the number for
(start,count,block,stride) for irregular selection for effective testing
collective chunk IO feature development in the future.
Solution:
Platforms tested:
Linux 2.4(heping), mostly comments, no need to test on other platforms.
Misc. update:
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Code cleanup
Description:
Trim trailing whitespace, which is making 'diff'ing the two branches
difficult.
Solution:
Ran this script in each directory:
foreach f (*.[ch] *.cpp)
sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f
end
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
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removed a debug print statment.
Platforms tested:
heping (pp)
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Bug fix
Description:
Initialize "use_gpfs" variable.
Platforms tested:
None - just eyeballed it.
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Purpose:
Make collective IO tests work with mpiposix
Description:
Although internally HDF5 is using independent IO for mpiposix driver,
it is still a good test to see whether HDF5 APIs can allow collective IO calls to pass
into mpiposix driver.
Previous tests ignore this test; now add it.
Solution:
Platforms tested:
AIX (copper), too minor to need to test with three platforms.
Misc. update:
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Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-)
Description:
Generally speaking, this is the "signed->unsigned" change to selections.
However, in the process of merging code back, things got stickier and stickier
until I ended up doing a big "sync the two branches up" operation. So... I
brought back all the "infrastructure" fixes from the development branch to the
release branch (which I think were actually making some improvement in
performance) as well as fixed several bugs which had been fixed in one branch,
but not the other.
I've also tagged the repository before making this checkin with the label
"before_signed_unsigned_changes".
Platforms tested:
FreeBSD 4.10 (sleipnir) w/parallel & fphdf5
FreeBSD 4.10 (sleipnir) w/threadsafe
FreeBSD 4.10 (sleipnir) w/backward compatibility
Solaris 2.7 (arabica) w/"purify options"
Solaris 2.8 (sol) w/FORTRAN & C++
AIX 5.x (copper) w/parallel & FORTRAN
IRIX64 6.5 (modi4) w/FORTRAN
Linux 2.4 (heping) w/FORTRAN & C++
Misc. update:
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Adding routines to test irrgular hyperslab selection inside one chunk.
Description:
For debugging purpose, tests are turned off now.
Solution:
Platforms tested:
AIX 5.1 and Linux 2.4 with parallel enabled.
Misc. update:
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Adding testing code for collective IO implementation
Description:
Won't affect testing HDF5 library.
Not tested yet, only check in for debugging purpose.
Solution:
Platforms tested:
Linux 2.4 + mpich 1.2.6
Aix 5.1 + mpcc_r
Misc. update:
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Modifying testing code for derived datatype.
However, this test won't be run in the HDF5 parallel test.
The code is checked in only for debugging purpose.
Description:
Solution:
Platforms tested:
Linux 2.4(mpich 1.2.6)
Misc. update:
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To test MPI derived datatype
Description:
A very simple irregular hyperslab selection in parallel.
Will not be tested when testing HDF5 library.
Check in only for debugging purpose.
This code will be tested in the future.
Solution:
Platforms tested:
AIX 5.1, Linux 2.4+mpich 1.2.6
Misc. update:
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