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* [svn-r19092] Description:Quincey Koziol2010-07-191-1/+20
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring "shape same" changes from LBL branch to trunk. These changes allow shapes that are the same, but projected into dataspaces with different ranks to be detected correctly, and also contains code to project a dataspace into greater/lesser number of dimensions, so the I/O can proceed in a faster way. These changes also contain several bug fixes and _lots_ of code cleanups to the MPI datatype creation code. Many other misc. code cleanup are included as well... Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17376] Description:Quincey Koziol2009-08-181-30/+1
| | | | | | | | | | | Make similar change to windows VFD as sec2 VFD, when converting from a family file to a single file. Tweak file sizes expected for parallel tests. Tested on: tg-login3, w/parallel Windows (post facto)
* [svn-r16770] Modified parallel tests so they can run with arbitrary number ↵Christian Chilan2009-04-171-2/+3
| | | | | | of processors. Tested on jam and abe.
* [svn-r16723] Modified dset and t_chunk_alloc tests to use dataset dimensions ↵Christian Chilan2009-04-091-13/+8
| | | | | | that are multiples of the number of processors. Tested on jam and abe.
* [svn-r16659] Modified dset and t_chunk_alloc tests to use dataset dimensions ↵Christian Chilan2009-04-021-1/+8
| | | | | | that are multiples of the number of processors. Tested on jam and abe.
* [svn-r15628] Description:Quincey Koziol2008-09-161-3/+3
| | | | | | | | | | | | | Remove trailing whitespace from C/C++ source files, with the following script: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Tested on: Mac OS X/32 10.5.5 (amazon) No need for h5committest, just whitespace changes...
* [svn-r15183] Purpose: _WIN32 macro cleanupScott Wegner2008-06-091-6/+0
| | | | | | | | | | Description: As part of our Windows cleanup, we try to remove windows-specific tweaks in the source code. There are many instances where Windows code is introduces via ifdef's. We re-evaluate whether they are still required, and found that many of them are not. Others we change to "feature"-specific code, rather than Windows-specific. Tested: VS2005 on WinXP VS.NET on WinXP h5committest (kagisopp, smirom, linew)
* [svn-r14098] Description:Quincey Koziol2007-08-211-1/+1
| | | | | | | | Clean up a few remaining API compatibility issues in the H5E API for parallel configurations Tested on: FreeBSD/64 6.2 (liberty) w/parallel
* [svn-r14096] There're 3 changes in this checkin as below:Raymond Lu2007-08-201-0/+3
| | | | | | | | | | | | | | | | | | 1. In H5Dwrite and H5Dread, let the data buffer point to a fake address if the application passes in an empty buffer. This is mainly for MPIO programs that some processes may not have any data to write or read but still participate the I/O. This solution solves some MPI's problem like the ChaMPIon on tungsten which doesn't support empty buffer. 2. The ChaMPIon on tungsten doesn't support complex derived MPI data type correctly and collective I/O when some processes don't have any data to write or read correctly. Detect the compiler "cmpicc" in the system-specific config file and set the variables for these two cases to false. The PHDF5 library already has set up a way to switch collective chunked I/O to independent under these two cases. 3. A bug fix - During the work of the optimization for compound data I/O, the case for switching collective chunked I/O to independent I/O was leftout. Fixed it by adding I/O caching to it in H5D_multi_chunk_collective_io in H5Dmpio.c. Tested on tungsten, cobalt, and kagiso for parallel; on linew and smirom for serial.
* [svn-r13778] Add test_filter_read to testphdf5.Christian Chilan2007-05-221-0/+2
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* [svn-r13766] In Visual Studio 2005 for 64-bit, _WIN32 is defined, but not ↵Scott Wegner2007-05-181-2/+2
| | | | | | | WIN32, so I've standardized all #ifdef's to use _WIN32. This should not affect any other platform. Tested: Visual Studio (32- and 64-bit) on Win XP
* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-071-2/+3
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
* [svn-r12967] Cleanup.Albert Cheng2006-11-221-43/+0
| | | | | | | The h5_mpi_get_file_size() is no longer used. The unused code caused some compiling warning messages. Removed the whole routine. Tested in heping pp mode.
* [svn-r12725] Purpose:Albert Cheng2006-10-061-0/+22
| | | | | | | | | | | | | Bug Fix (Bug 544) Description: SGI Altix's MPI_File_get_size overflowed at 2GB and more. Put in a temporary patch to use stat() instead to make Cobalt passing on this test (bigdset). A better fix (like detect if MPI_File_get_size does not work before using this is preferred.) Tested: Cobalt and Heping.
* [svn-r12554] New tests have been added to test the correctness of ↵MuQun Yang2006-08-091-4/+15
| | | | | | | | independent IO with file setview. To activite this test, add the command option -i. For example, at IBM AIX, type "poe testphdf5 -i" will test the library with independent IO with file setview. It simply replaces all the collective IO tests with independent IO with file setview.
* [svn-r12440] Purpose:Quincey Koziol2006-06-271-4/+4
| | | | | | | | | | | Code cleanup Description: Trim trailing whitespace in Makefile.am and C/C++ source files to make diffing changes easier. Platforms tested: None necessary, whitespace only change
* [svn-r12174] Purpose:MuQun Yang2006-03-291-1/+27
| | | | | | | | | | | | | | | | | | | | | | | | | | | | Adding parallel tests for optional collective chunk APIs Description: Three new APIs "H5Pset_dxpl_mpio_chunk_opt_ratio H5Pset_dxpl_mpio_chunk_opt_num H5Pset_dxpl_mpio_chunk_opt" for optional optimization choices from users have been added to the libraries. This check-in adds six tests to verify the funcationality and correctedness of these APIs. These tests need to be verified with 3 or more processors and with MPI-IO driver only. Solution: Using H5Pinsert, H5Pget, H5Pset to verify that the library indeed goes into the branch we hope for. Using H5_HAVE_INSTRUMENT macro to isolate these changes so that it won't affect or be misused by the application. Platforms tested: h5committest(shanti still refused to be connected) Parallel tests on heping somehow are skipped. Manually testing at heping. Have checked 1,2,3,4,5 processes. Misc. update:
* [svn-r11953] Purpose:MuQun Yang2006-02-171-2/+0
| | | | | | | | | | | | | | code cleanup Description: remove two printf lines accidently added for debugging at NCSA cobalt. Solution: Platforms tested: No need to test. Misc. update:
* [svn-r11951] Purpose:MuQun Yang2006-02-161-0/+4
| | | | | | | | | | | | | | | | Enhance collective chunk IO supports Description: Add a new test to check the correctness of the HDF5 library behavior for collective IO mode when one process doesn't have any contribution for IO. Solution: Platforms tested: IBM AIX 5.2(copper) Linux (heping) mpich-1.2.6 Misc. update:
* [svn-r11866] Purpose:Albert Cheng2006-01-061-6/+2
| | | | | | | | | | | | | | | | | | | | bug fix 504 Description: testpar/t_mpi would hang if $HDF5_NOCLEANUP is set. E.g., % env HDF5_NOCLEANUP=yes mpirun -np 3 ./t_mpi This happened because the environment variables are not exported to all mpi processes by the mpirun command. So, some attempted to do cleanup while others don't and some hang waiting for others to act. Solution: Instead individual program checking getenv, they all just called h5_cleanup no matter. h5_cleanup now uses getenv_all to check the $HDF5_NOCLEANUP if it is in parallel mode. Platforms tested: h5committested, tested pp in heping too.
* [svn-r11572] Purpose:MuQun Yang2005-10-171-26/+0
| | | | | | | | | | | | | | | Code clean-up for collective regular chunk IO tests. Description: Add descriptions for each tests for future maintenance. Solution: Platforms tested: Mostly comments, No need to use h5committest. heping(linux 2.4) Misc. update:
* [svn-r11448] Purpose:Pedro Vicente Nunes2005-09-211-2/+8
| | | | | | | | | | | | | | | | | | | new features Description: add support for compiling the library and testphdf5 in Windows Solution: Platforms tested: Linux AIX Solaris Windows VC6 Misc. update:
* [svn-r11340] Purpose:Albert Cheng2005-09-021-3/+1
| | | | | | | | Big data set test was default off and rarely tested. Changed it to default on so that it gets tested. Platforms tested: Heping PP and Copper pp.
* [svn-r11312] Purpose:Albert Cheng2005-08-301-0/+2
| | | | | | | | | | | | | | | | | | Bug #281 Description: A dataset created in serial mode with H5D_ALLOC_TIME_INCR allocation setting was not extendible, either explicitly by H5Dextend or implicitly by writing to unallocated chunks. This was because parallel mode expects the allocation mode be H5D_ALLOC_TIME_INCR only. Solution: Modified library to allocate more space when needed or directed if the file is opened by parallel mode, independent of what the dataset allocation mode is. Platforms tested: Heping pp.
* [svn-r11245] Purpose:Quincey Koziol2005-08-131-29/+29
| | | | | | | | | | | | | | | | | | | | Code cleanup Description: Trim trailing whitespace, which is making 'diff'ing the two branches difficult. Solution: Ran this script in each directory: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r11232] Purpose:MuQun Yang2005-08-111-0/+2
| | | | | | | | | | | | | | Modified collective chunk Io test Description: One test(collective chunk IO test 4) is no longer needed. Comment out first. The code should be cleaned up later. Solution: Platforms tested: Misc. update:
* [svn-r11067] Purpose:MuQun Yang2005-07-121-3/+35
| | | | | | | | | | | | | | | | | | Updating phase 2 work of collective IO Description: The current collective IO tests cannot test for number of processors bigger than some values, this change will lift those restriction. However, the test may be slower. Solution: Platforms tested: linux 2.4, AIX 5.1, Linux 2.4 IA64 and IRIX 6.5 (I haven't tested big number of processors with the restriction of the machine) Misc. update:
* [svn-r10598] Purpose:Albert Cheng2005-04-121-32/+45
| | | | | | | | | | | | | | | | Bug fix. Description: The irregular chunk IO tests do not work for processes sizes larger than 3. Added a check of number of processes and skip the irregular chunk IO tests if number of processes are larger than 3. Revamped the tests of collective chunk IO tests too. Platforms tested: Tested in mir. Misc. update:
* [svn-r10546] Purpose:MuQun Yang2005-04-051-2/+0
| | | | | | | | | | | | | | | | Support collective IO for irregular selection. Description: Solution: Platforms tested: Linux with MPICH AIX with mpcc_r Linux with ChaMPIO Altix with intel Misc. update:
* [svn-r10122] Purpose:Albert Cheng2005-03-021-3/+4
| | | | | | | | | | | | | | | | typo fix and small improvement. Description: t_coll_chunk.c: ccdataset_vrfy() was using a wrong routine name to identify itself. testphdf5.c: Add a definition of NFILENAME to be the common dimension size of FILENAME[] and filenames[][] since they must have the same first dimension size. Platforms tested: h5committested.
* [svn-r9727] Purpose:Quincey Koziol2004-12-291-13/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-) Description: Generally speaking, this is the "signed->unsigned" change to selections. However, in the process of merging code back, things got stickier and stickier until I ended up doing a big "sync the two branches up" operation. So... I brought back all the "infrastructure" fixes from the development branch to the release branch (which I think were actually making some improvement in performance) as well as fixed several bugs which had been fixed in one branch, but not the other. I've also tagged the repository before making this checkin with the label "before_signed_unsigned_changes". Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel & fphdf5 FreeBSD 4.10 (sleipnir) w/threadsafe FreeBSD 4.10 (sleipnir) w/backward compatibility Solaris 2.7 (arabica) w/"purify options" Solaris 2.8 (sol) w/FORTRAN & C++ AIX 5.x (copper) w/parallel & FORTRAN IRIX64 6.5 (modi4) w/FORTRAN Linux 2.4 (heping) w/FORTRAN & C++ Misc. update:
* [svn-r9658] Purpose:MuQun Yang2004-12-131-3/+7
| | | | | | | | | | | | | | Check in testing code for irregular hyperslab selection with multiple chunks. Description: For debugging only, will not be tested by h5committest. Solution: Platforms tested: Linux 2.4 (mpich 1.2.6) Misc. update:
* [svn-r9649] Purpose:MuQun Yang2004-12-081-3/+12
| | | | | | | | | | | | | | Adding routines to test irrgular hyperslab selection inside one chunk. Description: For debugging purpose, tests are turned off now. Solution: Platforms tested: AIX 5.1 and Linux 2.4 with parallel enabled. Misc. update:
* [svn-r9575] Purpose:MuQun Yang2004-11-241-6/+7
| | | | | | | | | | | | | | | | Adding testing code for collective IO implementation Description: Won't affect testing HDF5 library. Not tested yet, only check in for debugging purpose. Solution: Platforms tested: Linux 2.4 + mpich 1.2.6 Aix 5.1 + mpcc_r Misc. update:
* [svn-r9520] Purpose:MuQun Yang2004-11-111-0/+5
| | | | | | | | | | | | | | | | | | Adding general MPI derived datatype testing code. Description: The testing code will not be tested. The purpose of checking in is for better debugging later. HDF5 routine or daily test should not be aware of this. Solution: Platforms tested: Copper(AIX 5.1), Heping(Linux 2.4 + MPICH 1.2.6). Misc. update:
* [svn-r9358] Purpose:Quincey Koziol2004-10-041-2/+7
| | | | | | | | | | | | | | | Bug fix Description: Relax restrictions on parallel I/O to allow compressed, chunked datasets to be read in parallel (collective access will be degraded to independent access, but will retrieve the information still). Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Solaris 2.7 (arabica) IRIX64 6.5 (modi4) h5committest
* [svn-r9317] Purpose:Albert Cheng2004-09-241-49/+45
| | | | | | | | | | | | | | | | | | | | | | | | Code clean up Description: The tests used to have their own test file names due to the original program layout. Now that it is using the common test interface, individual test can be invoked at will (via -o). There is no need to have different test filenames. Only requirement is that certain read tests must follow immediately the corresponding write test since they use the same file. I have combined all test file names into just one common file name. This reduces the printout of test file name, very beneficial when the test is run by large number of processes. It makes future code maintenance easier too. Platforms tested: Tested in Eirene(PP) only. No h5committest because this is limited to the parallel tests and the changes are trivial. Misc. update:
* [svn-r9274] Purpose:John Mainzer2004-09-181-2/+12
| | | | | | | | | | | | | | | | | | | | | | | | | Add test to verify the fix of the parallel I/O mode confusion bug. Description: While the parallel I/O mode confusion bug is fixed, an automated regression test for this bug would be useful. Solution: Added a modified version of the original bug demonstration program to testphdf5. Platforms tested: copper h5committested eirene (parallel) Misc. update:
* [svn-r9234] Purpose:Quincey Koziol2004-09-091-1/+1
| | | | | | | | | | | | | | | | | | | | | | | Code cleanup Description: Tweak recent "forward compatibility" changes to the H5E* API (which allowed for the old H5E API functions to remain unchanged) by allowing for the error stack callback function (H5E_auto_t) to also remain unchanged from the 1.6 branch. This required changing the H5E{get|set}_auto routines to have the old style H5E_auto_t type (which didn't have a stack ID parameter) and the new H5E{get|set}_auto_stack routines to have a newer "H5E_auto_stack_t" type (which has a stack ID parameter). This should make the H5E API changes as forwardly compatible as possible. One side-affect of this change was that it was impossible to determine if the current auto error callback was the old style (H5E_auto_t) or the new style (H5E_auto_stack_t) of callback, so a new API function (H5Eauto_is_stack) was adde to query this. Platforms tested: FreeBSD 4.10 (sleipnir) IRIX64 6.5 (modi4) h5committest
* [svn-r9200] MuQun Yang2004-09-031-10/+7
| | | | | | | | | | | | | | | | | | | Purpose: Shrink HDF5 parallel test Description: Previously the collective chunk IO tests created and opened four HDF5 files; it turned out that all collective chunk IO tests can use one file for testing. Solution: To use one file for all collective chunk IO tests with trunc option to be set in H5Fcreate. Platforms tested: copper(no need to use h5committest) Misc. update:
* [svn-r9179] Purpose:Albert Cheng2004-09-011-24/+24
| | | | | | | | | | | | | Text display change Description: Changed the test names to much shorter strings for easier use. Platforms tested: No h5committed test. Only test parallel in eirene. Misc. update:
* [svn-r9141] Purpose:Albert Cheng2004-08-241-72/+27
| | | | | | | | | | | Code cleanup. Removed bunch of old options (r,w,v,i,b,e) that are no longer valid or useful after adopting the general test interface. Moved the test of sizeof MPI_Offset into the test routine itself. Platforms tested: Eirene and Sol using pp mode.
* [svn-r9130] Purpose:Albert Cheng2004-08-201-1/+3
| | | | | | | | | | | | | | | | | | | | | bug fix. Description: The test routines only print error messages but not all of them return number of errors detected back to the main routine which always exit with a 0 status. Thus make or shell commands could not detect there were errors. Solution: Changed the test routines to return appropriate number of errors to main routine which in turn exit with the appropriate exit code if errors found. Platforms tested: Tested in Sol and eirene (pp). Misc. update:
* [svn-r9115] Purpose:Albert Cheng2004-08-191-7/+5
| | | | | | | | | | | | | | | | | | | | | | | | | feature Description: Another revamp of the test interface. TestInit: is used to register Test Program name, test program specific Usage and option parsing routines. TestUsage: will invoke extra usage routine if provided. TestParseCmdLine: will invoke extra option parsing routine if provided. GetTestSummary() and GetTestCleanup() replaces the previous Summary and CleanUp arguments of TestParseCmdLine. test/testhdf5, test/ttsafe.c, testpar/t_mpi.c, testpar/testphdf5.c: All have been updated to use the new Test Routines. testpar/t_mpi.c: Also a fix of a compiler optimization bug when pgcc in Linux is used to compile it. Changed buf[] and expected to unsigned char type to avoid a bug that failed to do sign-extension. Platforms tested: "h5committested" Also tested thread-safe option in eirene.
* [svn-r9104] MuQun Yang2004-08-171-13/+16
| | | | | | | | | | | | | | | | | | | | | | | | | Purpose: bug fix Description: 1. The IF-block of skipping collective chunk IO tests when the number of processes is greater than some number essentially skipped all parallel tests. 2. John tested at copper with the number of processor = 64 and collective chunk IO tests passed, so we increase the number of precessor =24 to 64 for skipping the test. Solution: 1. change the IF block flow so that it only skips collective chunk IO tests when the number of process is greater than 64. Platforms tested: copper(only change a bit of parallel test code, no needs to test on other platforms). Misc. update:
* [svn-r9081] Purpose:Albert Cheng2004-08-131-29/+26
| | | | | | | | | | Feature Description: Updated to use the new syntax of TestParseCmdLine(). Platforms tested: On eirene both serial and parallel.
* [svn-r9077] Purpose:MuQun Yang2004-08-131-2/+0
| | | | | | | | | | | | | | | Correction of the previous check. Description: forget moving "debug #if macro" out of this file. Solution: remove that "#if 0 #endif" macro block. Platforms tested: Compile at eirene Too trivial to test Misc. update:
* [svn-r9076] Purpose:MuQun Yang2004-08-131-1/+11
| | | | | | | | | | | | | | | | | | | | | | Better collective chunk IO test arrangements Description: collective chunk IO tests have been verified with the number of process greater than 24 and the test is very slow with big number of process. That may cause confusions to users who run collective chunk IO tests. Solution: To avoid possible confusions, A if-block will be used to check whether the number of process is greater than 24. If yes, the collective chunk tests will be skipped and a message will be printed out. Platforms tested: linux 2.4 (too trivial to use h5committest) Misc. update:
* [svn-r9068] Purpose:Albert Cheng2004-08-111-114/+9
| | | | | | | | | | | | | | | | | | Cleanup and bug fix. Description: Bug fix: the checking of dobig test was done in the wrong place such that tests added after it would be run even for the -b option. Moved the dobig test checking to AFTER all tests are added. Cleanup: Removed old code now that the new way is working fine. Platforms tested: Tested in Eirene parallel only. Misc. update:
* [svn-r9050] Purpose:Albert Cheng2004-08-081-2/+4
| | | | | | | | | | | | | Feature Description: Added a feature such that if the test name starts with '-', do not run it by default. Platforms tested: Eirene both serial and parallel. Misc. update:
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