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* [svn-r23011] Purpose:Jonathan Kim2012-11-054-88/+63
| | | | | | | | | | | | HDFFV-8146 - Remove "multi-chunk IO without optimization" sub-feature from MPI I/O optimization for chunked dataset feature Description: The “multi-chunk IO without optimization” feature is removed and made the related xfer property (H5FD_MPIO_CHUNK_MULTI_IO) go directly to “multi-chunk-io” feature. Also update/fix/cleanup testings (chunk collective IO and actual chunk opt mode) accordingly. Merged from HDF5 trunk r22992. Tested: jam-pp (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), fred (mac64-LE), linew (solaris-BE), koala-pp, wallby-pp, cmake (jam-pp), Windows (32-LE cmake)
* [svn-r22788] HDFFV-8153: Pull POSIX_C_SOURCE define out to separate ↵Allen Byrne2012-09-191-0/+5
| | | | | | variable. Use ADD_DEFINITIONS (${HDF5_EXTRA_C_FLAGS}) in non-fortran CMakeLists.txt folders Tested: local
* [svn-r22783] Purpose:Jonathan Kim2012-09-181-1/+1
| | | | | | | | | | | HDFFV-8143 Provide a routine(s) for telling the user why the library broke collective data access Description: Changed to use H5Dopen2() instead of H5Dopen(), which caught by daily test on jam. This is based on previous commit r22780. Tested: jam-pp (linux32-LE)
* [svn-r22780] Purpose:Jonathan Kim2012-09-173-0/+696
| | | | | | | | | | | | | | | | | | | | | HDFFV-8143 Provide a routine(s) for telling the user why the library broke collective data access Description: Added H5Pget_mpio_no_collective_cause() function that retrive reasons why the collective I/O was broken during Read/Write IO access. Reasons to break collective I/O: - SET_INDEPENDENT - DATATYPE_CONVERSION - DATA_TRANSFORMS - MPIPOSIX - NOT_SIMPLE_OR_SCALAR_DATASPACES (NULL Space) - POINT_SELECTIONS - NOT_CONTIGUOUS_OR_CHUNKED_DATASET (Compact or External-Storage) - FILTERS Merged from HDF5 trunk r22735, r22741 , 22743, 22744, 22763. Tested: jam-pp (linux32-LE), koala-pp (linux64-LE), wallaby-pp
* [svn-r22759] Description:Quincey Koziol2012-09-131-0/+3
| | | | | | | | | | | | | | Bring r22758 from trunk to 1.8 branch: Bring generic improvements from encode/decode property list branch to the trunk. This includes a better version of the property list comparison routine, cleaned up compiler warnings, and some cleaned up property list callbacks. Also, started on changes to clean up parallel test output, so that it doesn't report successful tests from each process. Tested on: Mac OSX/64 10.7.4 (amazon) w/debug, GCC 4.7.x, FORTRAN, C++, threadsafe and parallel (h5committested on trunk)
* [svn-r22724] Convert tests to *.sh.in.Allen Byrne2012-08-282-21/+16
| | | | | | | | Convert configure.in to configure.ac. Align TESTS usage with autotools convention. Update all references from configure.in to configure.ac Tested: h5committest
* [svn-r22711] Updated autotools: autoconf 2.69, automake 1.12.3, m4 1.4.16, ↵Larry Knox2012-08-231-43/+94
| | | | | | libtool 2.4.2 Tested THG machines.
* [svn-r22652] bring 22651 to branchMohamad Chaarawi2012-08-092-11/+15
| | | | fix a bug that would skip or include the parallel atomicity test with cmd arguments -o or -x
* [svn-r22402] HDFFV-8064: Merge windows #ifdef blocks to 1.8Allen Byrne2012-05-242-3/+12
| | | | Trunk dailies passed
* [svn-r22291] Description:Quincey Koziol2012-04-171-1/+1
| | | | | | | | | | Bring r22287 from trunk to 1.8 branch: Clean up more FUNC_ENTER/FUNC_LEAVE macros and move H5D & H5T code toward the final design (as exemplified by the H5EA & H5FA code). Tested on: Mac OSX/64 10.7.3 (amazon) w/debug & parallel
* [svn-r22248] Added new files and tests to CMakeLists.txtAllen Byrne2012-04-041-0/+1
| | | | Tested: local linux
* [svn-r22245] Description:Quincey Koziol2012-04-031-3/+3
| | | | | | | | | | | Bring r22244 from trunk to 1.8 branch: Correct use of deprecated API routines in test routine. Tested on: Linux/PPC 2.6 (ostrich) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-ia64 2.6 (ember) w/Intel compilers, w/C++ & FORTRAN, parallel, in production mode
* [svn-r22228] Description:Quincey Koziol2012-04-015-7/+412
| | | | | | | | | Bring r22219 from trunk to 1.8 branch: (with release manager's blessing) Merge "file image" changes from feature branch back to trunk. Tested on: h5committested
* [svn-r22157] Merge the atomicity routines from the trunkMohamad Chaarawi2012-03-273-0/+340
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* [svn-r22148] Removed incorrect executable svn properties from text, source, ↵Dana Robinson2012-03-261-0/+0
| | | | in, and HDF5 files.
* [svn-r21805] Update CMake Required version in all folders to match current ↵Allen Byrne2011-12-051-1/+1
| | | | standard 2.8.6
* [svn-r21717] Update cmake configurationAllen Byrne2011-11-041-3/+4
| | | | | | | Update cmake to generate source folders in VS Brought parallel changes from trunk Tested: local linux
* [svn-r21533] Description:Quincey Koziol2011-10-123-1/+567
| | | | | | | | | Bring r21442 and r21529 from trunk to 1.8 branch: Add new API routines for querying if collective raw data I/O was actually performed collectively. Tested: Linux/32 2.6 (jam) (h5committested on trunk)
* [svn-r21479] Merge revision 21101 from trunk to 1.8 branch:Mike McGreevy2011-10-051-162/+105
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | HDFFV-7639 Purpose: Remove H5_MPI_SPECIAL_COLLECTIVE_IO_WORKS and H5_MPI_COMPLEX_DERIVED_DATATYPE_WORKS #defines from source. Description: Two advanced parallel functionalities, special collective IO and complex derived datatypes, are not supported by older implementations of mpi, and thus our code limits the use of these features with #ifdefs and has checks in configure to set them (or not). Unfortunately, configure can't actually run a parallel check to see if these features are working (nor not) so it resorts to looking in the config files where they are explicity enabled or disabled based on versions of mpi, sytems being built on, or for no documented reason at all (i.e. just set to on or off as some 'default'). Overriding these settings is easy if need be, provided it is known that it needs to be done to get improved performance, and oftentimes it is not. Most new MPI implementations successfully handle the functionality requested when these #defines are set, and many of the "turn these features off" cases in the config files are for old (> 5 years) versions of MPI and retired systems (such as NCSA's tungsten). Therefore, the decision has been made to remove the support for these old versions of MPI and systems that cannot handle these behaviors. The #ifdefs and supporting setup in the config/ files and configure script has been removed, and the code executed when these options were not set removed from the source. In passing, this commit also cleans up some whitespace issues in both t_mpi.c and H5Dmpio.c. Furthermore, in t_mpi.c, the special collective IO test was not getting regularly run due to it being written to work only with four processes (we regularly test with six, previously with three), and thus it failed when actually run due to an out of bounds data buffer assignment. It has been modified to run at any number of processes greater than four, and the memory problem has been fixed so the test passes. Tested: Jam, h5committest, Ember
* [svn-r21421] Merged the Fortran 2003 changes from the trunk into the 1.8 ↵Scot Breitenfeld2011-09-271-0/+3
| | | | | | | | | | | branch, used: svn merge -r 20506:21414 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran Tested: jam (gnu, intel, pgi compilers) Also merged effected non-Fortran files: svn merge -r21247:r21248 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/src/libhdf5.settings.in
* [svn-r21394] Updated tuning of fraction of tests skipped in t_shapesame.c as ↵John Mainzer2011-09-141-2/+2
| | | | | | | | a function of express test level to reflect results of testing with Ray. Tested parallel on jam -- no further testing as the change was very minor.
* [svn-r21380] John Mainzer2011-09-131-2804/+3033
| | | | | | | | | | | Ported shape same test express test mods from trunk to 1.8 branch. This was mostly a matter of copying testpar/t_shapesame.c from trunk to the 1.8 branch, as the root versions of the files were almost identical. Tested parallel on Jam only, as changes have been well tested on the trunk.
* [svn-r21364] Related files to files from HDF5-33 review - all changes ran ↵Allen Byrne2011-09-063-792/+797
| | | | | | | | | | correctly in trunk. Changes have been tested in cmake branch. t_cache.c - define needed for windows t_posix_compliant.c - #ifdef around include <unistd.h> t_shapesame.c - HD prefix needed for stat function Tested: local linux
* [svn-r21363] files from HDF5-33 review - all changes ran correctly in trunk. ↵Allen Byrne2011-09-063-821/+821
| | | | | | Changes have been tested in cmake branch. Tested: local linux
* [svn-r21336] Synchronize cmake files with tested commits from trunkAllen Byrne2011-08-301-5/+9
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* [svn-r21075] Remove incorrect -p option from test macro. Discovered from ↵Allen Byrne2011-07-081-1/+1
| | | | public 1.8 CDash reports
* [svn-r21044] Purpose:Mike McGreevy2011-06-281-1/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Fix HDFFV-7592 "Remove PACKEDBITS option from autotools files" Description: The code for h5dump's packed bits feature was conditionally compiled in via this option during its 'beta' release in 1.8.5. Now that the feature is fully supported, h5dump has since been changed to always compile the packed bits code (having removed the #ifdef H5_HAVE_H5DUMP_PACKED_BITS checks), so this option in configure is no longer needed. This commit removes the --enable-h5dump-packed-bits configure option, including the help summary from './configure --help' and the libhdf5.settings output summary, the PACKED_BITS Makefile variable, and the definition of H5_HAVE_H5DUMP_PACKED_BITS define in appropriate pubconf header files (which has already been removed from use in source code as of r20722). Note that this option was never added to the trunk, thus this commit only need occur on the 1.8 branch. Tested: - Configure output, help, & summary verified on jam - h5committested
* [svn-r20628] Add dependency of t_pflush2 on t_pflush1Allen Byrne2011-04-251-0/+2
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* [svn-r20525] Description:Mike McGreevy2011-04-151-20/+45
| | | | | | | | Merge revisions 20475, 20502, and 20504 from trunk to 1.8 branch. Tested: Tested on jam, fred, bangan (CYGWIN), and h5committested.
* [svn-r20183] Add HDF5_USING_MEMCHECKER guards around script mode ADD_TEST. ↵Allen Byrne2011-03-041-13/+15
| | | | | | | | This will replace the list of ignore tests in CTestCustom.cmake file. Bring back from trunk Tested: local linux
* [svn-r20157] Bring CMake changes to branch up to r20156 from trunkAllen Byrne2011-02-251-2/+2
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* [svn-r20120] Description:Quincey Koziol2011-02-172-179/+176
| | | | | | | | | | | | | | | | | | | | | | Bring r20119 from trunk to 1.8 branch: Clean up MPI resource leaks in parallel tests, along with a bunch of compiler warnings. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.6 (amazon) in debug mode Mac OS X/32 10.6.6 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r20021] Update cmake file for testpar changes from r19939Allen Byrne2011-01-311-2/+2
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* [svn-r19979] Patched in a temporary fix so that:Albert Cheng2011-01-211-8/+11
| | | | | | | | | | | | | | When $HDF5ExpressTest is NOT set or when it is set to 1 or 0, it does not skip test. When $HDF5ExpressTest is set other than values above, it may skip tests. The following message is printed: Test skipped when some tests are really skipped. This is a temporary patch so that v186 can be tested. A more permanent fix is needed, later. Tested: h5commitest.
* [svn-r19964] Purpose:Albert Cheng2011-01-181-14/+59
| | | | | | | | This continues the previous work and this one breaks the checker_board_hyperslab_dr_pio_test() into 4 smaller sub-tests. Tested: h5committest plus jam serial.
* [svn-r19962] Purpose:Albert Cheng2011-01-162-21/+76
| | | | | | | | | | | | The shape same tests ran too long. Break them into smaller subtests so that they can finish sub-test in a shorter time. Easier to tell which one sub-test is taking too much time and/or errors occur in one fo the sub-tests. This one breaks the contig_hyperslab_dr_pio_test() into 4 smaller sub-tests. Tested: h5committest
* [svn-r19960] Bug: the VRFY macro, for some reason, called MPI_Finalize() ↵Albert Cheng2011-01-165-14/+57
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | when it encountered error and wanted to exit the test program. This was not good since if only a subset of processes called MPI_Finalize(), the other processes will likely hang. That happened in AIX that it would waited till the alarm signal to kill the processes. Definitely a waste of time. Solution: Changed it to call MPI_Abort. That showed another problem. HDF5 has setup atexit post-process to try to close unclose objects, release resources, etc. But if the MPI processes have encountered an error and has been aborted, it is not likely any more MPI calls can function properly. E.g., it would attempt to free some communicators in the HDF5 MPIO file handle. It would again hang. Solution: need to call H5dont_atexit() to disable any atexit post-processing. This must be done early, like before calling H5open. This is added to each parallel test main program. testphdf5.h: Changed macros VRFY and MESG. Added comments too. testphdf5.c: t_mpi.c: t_cache.c: t_shapesame.c: Added H5dont_atexit. Tested: h5committest.
* [svn-r19955] Removed since its code has been copied to t_shapesame.c.Albert Cheng2011-01-141-4433/+0
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* [svn-r19946] Bug fix: testph5.in failed to run the 't_shapesame -p' by ↵Albert Cheng2011-01-121-3/+2
| | | | | | | | | | | | | | | claiming it could not find t_shapesame in daily test. Turned out the mpiexec launcher is working like real shell and the daily test signon (hdftest) does not have "." in its $PATH. So, it could not automatically look for executables in the current directory. Solution: Change the executable to an explicit ./t_shapesame. Now mpiexec can "find" it. Tested by hand in Amani.
* [svn-r19939] Purpose:Albert Cheng2011-01-125-21/+4864
| | | | | | | | | | | | | | | | | | | | | | | Moved the two shape same tests from testphdf5 to a separated executables, named t_shapesame. The shape same tests runs too long for testphdf5. In a separated executalbe, it will be easier to separate any errors in testphdf5 sub-tests from the shape same tests. t_shapesame.c: Contains the shape same tests (cloned from t_rank_projection.c) plus a duplicate of "testphdf5.c" for now. After verifying it is correct, more cleanup is needed. testphdf5.c: Removed the two shape same tests (chsssdrpio & cbhsssdrpio). Makefile.am: Makefile.in: Added t_shapesame as a new test executable. Removed t_rank_projections.c from part of testphdf5. testph5.sh.in: Temporary added the "t_shapesame -p" test for testing shape same tests with MPIO-Posix VFD. Tested: h5committested, plus serial jam.
* [svn-r19906] Windows: Correct how fortran links in CRT library. Also correct ↵Allen Byrne2011-01-041-2/+2
| | | | | | macro use for checking libtype. Tested: Windows
* [svn-r19898] Remove use of /MT compile flag for building static libs and ↵Allen Byrne2010-12-301-2/+0
| | | | programs. Added BUILT_AS_STATIC_LIBRARY define to set the windows import/export defines correctly for static libraries.
* [svn-r19862] Updated libtool to version 2.4, autoconf to version 2.68, and ↵Larry Knox2010-12-011-0/+3
| | | | | | m4 to version 1.4.15. Tested with h5committest on amani, jam and heiwa.
* [svn-r19831] John Mainzer2010-11-191-10/+38
| | | | | | | | | | | | | | | | | | | | | Checked in fix for failure in shape same tests that appeared after Quincy's recent massage of the test code. The problem was a race condition created when Quincey re-worked the code selecting either collective or independant I/O. Previously, when independant I/O was selected in the test, I had used H5Pset_dxpl_mpio() and H5Pset_dxpl_mpio_collective_opt() to select collective semantics with independant I/O going on under the hood. Quincey modified this to call H5Pset_dxpl_mpio() when collective I/O was selected, and do nothing in the independant I/O case. As a result, processes were able to race ahead and modify the initial values of the data set before some processes had verified that the initialization was correct. Solved the problem by adding barriers, and making all barriers dependant on independant I/O being selected. Tested parallel on amani and phoenix. h5committested.
* [svn-r19745] Description:Quincey Koziol2010-11-092-194/+42
| | | | | | | | | | | | Bring r19743-19744 from trunk to 1.8 branch: Correct tests to use native datatypes consistently, and also to use "normal" methods for performing collective I/O. Also, minor cleanups for zeroing out buffers, etc. Tested on: FreeBSD/32 6.3 (duty) w/debug (h5committested on trunk)
* [svn-r19723] John Mainzer2010-11-031-0/+3
| | | | | | | | Bug fix for failure in the round robin metadata write ojbect header metadata confusion test that appeared after Albert modified the test. Cursory commit test. No test on Abe as that system is down, the fix is very minor, and it seems to work in the 1.8.6 branch
* [svn-r19705] Added VFD test options.Allen Byrne2010-11-011-0/+43
| | | | Tested: local linux
* [svn-r19683] Bug 2054: Round Robin code caused H5FFlush to corrupt a file.Albert Cheng2010-10-282-112/+492
| | | | | | | | | John Mainzer fixed the bug and added a test which wrote file and flush a few time; close the file then open it by serial and read simple structure. I changed the test to two parallel running parts of ..._writer and ..._reader and have the reader verify the file after every flush by the writer. Tested: parallel in Jam and Amani.
* [svn-r19647] John Mainzer2010-10-191-5/+5
| | | | | | | | | | Replaced calls to H5Dcreate() and H5Acreate() with calls to H5Dcreate2() and H5Acreate2() respectively in t_mdset.c. This was done to repair a compile failure that occured on a build with the --with-default-api-version=v16 config option Cursory commit test
* [svn-r19631] John Mainzer2010-10-181-1/+1
| | | | | | | Modified test code in t_mdset to use H5Dopen2() instead of H5Dopen1(). This should fix the compile failure when we used --disable-deprecated-symbols Cursory commit test
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