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* [svn-r27222] Merge of r27035-27221 from the trunk.Dana Robinson2015-06-174-514/+357
|\ | | | | | | | | | | Tested on 64-bit linux VM: Serial: C++ and Fortran 2003 Parallel: Fortran
| * [svn-r27204] Description:Quincey Koziol2015-06-151-236/+181
| | | | | | | | | | | | | | | | | | Clean up compiler warnings before merging in v3 metadata cache changes from branch. Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.x (jam) w/serial & parallel
| * [svn-r27162] fix for HDFFV-9412:Mohamad Chaarawi2015-06-084-9/+97
| | | | | | | | | | | | | | - Check for mpi is_initialized and is_finalized before making MPI calls in init/terminate of HDF5. - Add a test to make sure we can make serial HDF5 calls from rank 0 after MPI_Finalize is called. tested with h5committest
| * [svn-r27144] Description:Quincey Koziol2015-06-031-2/+3
| | | | | | | | | | | | | | | | | | | | Normalize trunk against the metadata_cache_merge branch, in preparation for merging the branch into the trunk. Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/64 2.6.x (koala) w/serial Linux/32 2.6.x (jam) w/serial & parallel
| * [svn-r27133] - Add a new attribute function characterstic for format:Mohamad Chaarawi2015-06-011-12/+12
| | | | | | | | | | | | | | | | * H5_ATTR_FORMAT(X,Y,Z) __attribute__((format(X, Y, Z))) - Rename UNUSED attribute characterstic to H5_ATTR_UNUSED. - Rename NORETURN attribute characterstic to H5_ATTR_NORETURN tested with h5committest.
| * [svn-r27084] Description:Quincey Koziol2015-05-151-274/+93
| | | | | | | | | | | | | | | | Clean up cache tests, to align w/v3 metadata cache changes Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.* (jam) w/serial & parallel
* | [svn-r27038] Merge of r26393-27031 from the trunk.Dana Robinson2015-05-071-2/+2
|\ \ | |/ | | | | Tested on 64-bit linux VM w/ C++ and Fortran 2003
| * [svn-r26711] Recommitting revisions 26669 and 26670, removing VPATH and ↵Larry Knox2015-04-021-1/+0
| | | | | | | | | | | | | | | | redundant /usr/include and lib in fcompile and link flags checks, now that I have run reconfigure. Also changed paths to h5cc, etc. in scripts to run installed examples from relative paths to absolute paths. Tested with h5committest.
| * [svn-r26660] HDFFV-9131: autotols reworkAllen Byrne2015-03-301-2/+0
| | | | | | | | | | | | | | Remove CXX_CONDITIONAL remove unneeded/obsolete sections. h5commtitest
| * [svn-r26594] Merge macros and fortran changes from dual_binary feature.Allen Byrne2015-03-251-2/+2
| | | | | | | | Tested: local linux
| * [svn-r26509] Run reconfigure after merges from autotools_rework branch.Jerome Soumagne2015-03-201-2/+0
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* | [svn-r26350] Merge of r26273-26348 from the trunk.Dana Robinson2015-03-048-16/+275
|\ \ | |/ | | | | Tested on: h5committest
| * [svn-r26329] Merge of r26069, r26070, and r26072 from the ↵Dana Robinson2015-02-273-36/+24
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | features/autotools_rework branch. Removed the configure option that allows selective disabling of individual internal filters (fletcher32, shuffle, etc.). This feature mucked up the code with a lot of #ifdefs, saved very little space, and was not scalable to a general scheme for library size reduction. We've decided to remove the feature while we investigate a more general scheme for decreasing the library size. Part of: HDFFV-9086 Tested on: h5committest
| * [svn-r26303] remove files with .clog2 extension generated by MPE when doing ↵Mohamad Chaarawi2015-02-251-3/+3
| | | | | | | | make clean.
| * [svn-r26279] re-commit 26260 that Dana moved out fixing the versioning of ↵Mohamad Chaarawi2015-02-238-23/+300
| | | | | | | | functions to work with v16 default API.
| * [svn-r26276] Merged r26075-80, 86 from features/autotools_rework branch.Dana Robinson2015-02-231-2/+1
| | | | | | | | | | | | | | | | | | | | | | | | Cleans up time functions in the autotools input files. Removed deprecated gettimeofday() time zone code and configure processing. Also removed some unused time function configure checks and defines. Fixes: HDFFV-9083 and HDFFV-9085 Tested on: 32-bit linux, serial and parallel (jam) OS X (kite) Solaris (emu)
* | [svn-r26274] Merge of r26096 to r26271 from trunk.Dana Robinson2015-02-222-2/+9
|\ \ | |/ | | | | | | Tested on: jam - serial: C++/Fortran parallel: Fortran
| * [svn-r26271] Reverse merge of r26260 which was causing daily test failures.Dana Robinson2015-02-229-301/+23
| | | | | | | | Tested on: jam w/ parallel and fortran
| * [svn-r26260] - add an attribute callback to call H5_term_library when ↵Mohamad Chaarawi2015-02-209-23/+301
| | | | | | | | | | | | | | | | | | MPI_COMM_SELF is destroyed. - add tests for above. - this is a fix for HDFFV-883. tested h5committest
| * [svn-r26222] call H5close before MPI_Finalize() and close some objects that ↵Mohamad Chaarawi2015-02-181-1/+8
| | | | | | | | could be potentially left open.
| * [svn-r26208] Update cmake minimumsAllen Byrne2015-02-181-1/+1
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| * [svn-r26188] Merged autotools fixes into the trunk:Scot Breitenfeld2015-02-161-1/+2
| | | | | | | | HDFFV-9089, HDFFV-9091, HDFFV-9092, HDFFV-9094, HDFFV-9095
| * [svn-r26180] merge configure fixes for HDFFV-9068,9069,9096,9097,9135 from ↵Mohamad Chaarawi2015-02-161-1/+0
| | | | | | | | | | | | | | | | | | | | | | | | autotools_rework branch: - Remove Infering parallel compilers (C and Fortran) from configure.ac - Remove restriction to build shared with parallel - Cleanup parallel sections in configure.ac - remove large file support checks - MPE fixes. tested with h5committest.
* | [svn-r26097] Removed configure and Makefile.in files from version control.Dana Robinson2015-02-021-1401/+0
| | | | | | | | | | | | | | | | | | Developers will now have to run bin/reconfigure (deprecated, will be removed soon) or autogen.sh after checking out code. Part of: HDFFV-9120 Tested on: jam with Fortran and C++
* | [svn-r26078] Changed a timezone struct to NULL in testpar/t_cache.c.Dana Robinson2015-01-291-2/+1
| | | | | | | | | | | | Part of HDFFV-9085 Tested on: jam w/ parallel
* | [svn-r26069] Removed the option to selectively disable internal filters like ↵Dana Robinson2015-01-293-38/+24
| | | | | | | | | | | | | | | | | | | | n-bit at compile time. Fixes HDFFV-9086 Tested on: jam, both serial and parallel w/ fortran & C++
* | [svn-r26051] Fix for HDFFV-9092Scot Breitenfeld2015-01-271-1/+2
|/ | | | | | | | | | | | Change AC_TRY_RUN TO AC_TRY_COMPILE Changed all the instances of AC_TRY_RUN for the Fortran and C++ tests to use AC_COMPILE_IFELSE and moved all the tests to new files in m4 directory: aclocal_cxx.m4 (for C++ tests) aclocal_fc.m4 (for Fortran tests) tested: jam
* [svn-r25963] Do not remove the prefix in the chunk alloc file, otherwise it ↵Mohamad Chaarawi2015-01-081-1/+1
| | | | | | | | makes the H5Fcreate fail when prefix is specified. tested parallel on Jam.
* [svn-r25928] Description:Quincey Koziol2014-12-291-12/+8
| | | | | | | | Minor code cleanups found while reviewing 'avoid_truncate' changes. Tested on: MacOSX/64 10.10.1 (amazon) w/serial & parallel (too minor to require h5committest)
* [svn-r25921] - wrap MPI 3 usage with MPI_VERSION compile time check.Mohamad Chaarawi2014-12-232-4/+8
| | | | - build out unbuffered stdout/err for windows
* [svn-r25884] Description:Quincey Koziol2014-12-111-3/+1
| | | | | | | | Minor code cleanups found while reviewing 'avoid truncate' branch. Tested on: MacOSX/64 10.10.1 (amazon) w/serial & parallel (too minor to require h5committest)
* [svn-r25790] fix bug in shapesame test where test fails with more than 10Mohamad Chaarawi2014-11-051-2/+8
| | | | | | | procs. This is a fix in the test itself and does not have to do with the library code. tested cloud machine with parallel.
* [svn-r25779] fix bug in parallel tests where a compact dset is being createdMohamad Chaarawi2014-11-041-4/+11
| | | | | | | proportional to the process count without regard to the 64KB limit for compact datasets. tested on jam with parallel.
* [svn-r25651] Fix for: HDFFV-8715Mohamad Chaarawi2014-10-012-2/+7
| | | | | | HDF5_PARAPREFIX is ignored in parallel dense attribute and performance tests. tested on Jam w/ parallel.
* [svn-r25573] fix error output when dataset verify detects wrong data.Mohamad Chaarawi2014-09-051-1/+1
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* [svn-r25503] - fix bug in encode/decode plist parallel test when 1 proccess ↵Mohamad Chaarawi2014-08-013-25/+36
| | | | | | is used to run the test. - fix warning in t_chunk_alloc.
* [svn-r25496] Description:Quincey Koziol2014-07-301-1/+1
| | | | | | | | | Merge 64-bit ID changes from branch to trunk. (Plus a few minor cleanups that aren't on the branch) Tested on: Mac OSX/64 10.9.4 (amazon) w/C++ & FORTRAN (h5committested on branch already for a week)
* [svn-r25401] add serial and parallel regression tests for zero dset ↵Mohamad Chaarawi2014-07-093-0/+61
| | | | read/write bug.
* [svn-r25398] add a check to make sure MPI_File_get_size() returns correct ↵Mohamad Chaarawi2014-07-091-1/+2
| | | | value (HDFFV-8856).
* [svn-r25397] - remove configure checks for MPI_File_get_size and BigMohamad Chaarawi2014-07-073-34/+1
| | | | | MPI_File_set_size as they are supported by most MPI implementations. - fix bug in t_mpi.c (HDFFV-8856)
* [svn-r25282] remove obsolete fileAllen Byrne2014-06-131-5/+0
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* [svn-r25188] Implement change to cmake_ext_mod config folderAllen Byrne2014-05-142-2/+2
| | | | Tested: local linux
* [svn-r25135] Remove property will fail - This only is true on windows shared.Allen Byrne2014-04-291-1/+2
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* [svn-r25128] HDFFV-8172: Add tests properties that indicate it will fail and ↵Allen Byrne2014-04-281-1/+3
| | | | to depend on PASSED in the output.
* [svn-r25117] Removed LT_ADD_LIBHDF5_DEPENDENCY configure conditional to roll ↵Larry Knox2014-04-251-1/+0
| | | | | | | | | | | back fix for removing rpaths from l ib files. The fix also removed dependencies on libhdf5, etc. when the --disable-sharedlib-rpath co nfigure option was invoked. Added instead configure variable hardcode_into_lib=no. This removes rpath from lib files on Linux and solaris machines. Tested with h5committest on jam, koala, ostrich and platypus (cmake), and with configure option --disable-sharedlib-rpath on emu, platypus and quail.
* [svn-r25084] Description:Quincey Koziol2014-04-231-0/+1
| | | | | | | | | Begin process of migrating from using property list IDs internally to the library to using the internal generic property list data structure. Tested on: Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & parallel (h5committest forthcoming)
* [svn-r24948] Group tests by Common nameAllen Byrne2014-04-021-1/+1
| | | | | | Remove WIN32 AND NOT CYGWIN if blocks - should be just WIN32 Tested: local linux CMake
* [svn-r24932] HDFFV-8290: Remove unnecessary $(srcdir) and use AM_CPPFLAGS ↵Allen Byrne2014-03-312-67/+449
| | | | | | instead of INCLUDES. Update automake to 1.14.1 h5committest
* [svn-r24864] Description:Quincey Koziol2014-03-2114-1330/+78
| | | | | | | | | | | | | | | | | | Remove all traces of MPI-POSIX VFD and GPFS detection/code. Remove remaining traces of stream VFD. Remove testpar/t_posix_compliant test (it's not actually verifying anything). Clean up H5D__mpio_opt_possible() further. Moved environment variable that disables MPI collective operations into MPI-IO VFD (instead of it being in src/H5S.c). A few other small code cleanups. Tested on: Mac OSX/64 10.9.2 (amazon) w/parallel & serial
* [svn-r24789] Bump up the minimum cmake versionAllen Byrne2014-03-131-1/+1
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