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* [svn-r24709] rename H5V to H5VM since H5V is needed in the fastforward ↵Mohamad Chaarawi2014-02-131-25/+20
| | | | | | | | | | | | project for view objects. The addition of view objects in the fastforward project is expected to be brough into the trunk sometimes in the future, which is why we need to make this change. Tested Manually on Jam and Ostrich. Tested with h5commitest - Koala with intel compilers failed, but nothing had to do with those changes. error on Koala: error while loading shared libraries: libirng.so
* [svn-r24612] fix bugs in parallel tests exposed in corner cases when running ↵Mohamad Chaarawi2014-01-064-43/+53
| | | | | | | | | | | | | | | | with 1 or 2 processes. First bug is in testpar/t_mdset.c, where the test reports an error in addition to skipping the test if there are less than three procs. Fix to just skip the test. Second bug is in testpar/t_dset.c in actual_io_mode tests, where incorrect expected value for IO mode was set if the number of procs running the test is 1. tested with h5committest.
* [svn-r24380] The parallel test code now uses HDfree, HDmalloc, and HDcallocDana Robinson2013-10-315-89/+89
| | | | | | | | | | | exclusively. Part of the preparation for a fix for HDFFV-8551. Tested on: 32-bit LE linux (jam) w/ parallel and Fortran. There are no behavior changes, so testing was minimal.
* [svn-r24194] Don't add hdf5 library dependencies to lib files when ↵Larry Knox2013-09-241-0/+1
| | | | | | --disable-sharedlib-rpath configure option is invoked. Fix for HDFFV-8276. Tested with h5committest and on hdf-duck.
* [svn-r24029] Move TESTS to seperate file to allow easier editing by all ↵Allen Byrne2013-08-192-54/+68
| | | | | | developers. Tested: local linux
* [svn-r23745] HDFFV-8461: Add Windows /MT supportAllen Byrne2013-06-101-0/+2
| | | | This adds the UserMacros.cmake support needed.
* [svn-r23607] Purpose:Albert Cheng2013-04-221-1/+1
| | | | | | | | | | | Daily test failed in koala with parallel and v16compat API from the previous commit r22735. Descriptoin: Changed to use H5Dopen2() instead of H5Dopen(). Tested: koala --enable-parallel --with-default-api-version=v16. No h5committest test since this is limited to parallel test program.
* [svn-r23544] Description:Quincey Koziol2013-04-041-1/+1
| | | | | | | Correct API version mistake w/H5Acreate -> H5Acreate2 Tested on: Mac OSX/64 10.8.3 (amazon) w/parallel
* [svn-r23529] Description:Quincey Koziol2013-04-034-119/+65
| | | | | | | | Stop aliasing property to indicate internal collective metadata operations with property to perform collective raw data operations from the application. Tested on: Mac OSX/64 10.8.3 (amazon) w/paralllel
* [svn-r23305] HDFFV-8257: szip still used even if headers are not found. ↵Allen Byrne2013-02-181-1/+1
| | | | | | Change configure to test the result of the CHECK HEADERS call before checking for the library. Tested: local linux, h5committest
* [svn-r23160] HDFFV-8227: Mac DARWIN requires CMake 2.8.10Allen Byrne2013-01-141-1/+1
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* [svn-r22992] Purpose:Jonathan Kim2012-10-304-88/+63
| | | | | | | | | | | HDFFV-8146 - Remove "multi-chunk IO without optimization" sub-feature from MPI I/O optimization for chunked dataset feature Description: The “multi-chunk IO without optimization” feature is removed and made the related xfer property (H5FD_MPIO_CHUNK_MULTI_IO) go directly to “multi-chunk-io” feature. Also update/fix/cleanup testings (chunk collective IO and actual chunk opt mode) accordingly. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), fred (mac64-LE), Windows (32-LE cmake), cmake (jam)
* [svn-r22908] Reverted changes in revision 22819Larry Knox2012-10-161-2/+0
| | | | Tested with h5committest on jam, koala and ostrich.
* [svn-r22819] Added H5BLD_STATIC and HDF5_USE_SHLIB to configure.ac so that ↵Larry Knox2012-09-271-0/+2
| | | | | | if configured with --disable-static the default for HDF5_USE_SHLIB in the compile scripts will be changed to yes. This is a fix for HDFFV-8141, where the compile scripts try to link to non-existant static hdf5 libraries. Tested on jam,koala,ostrich(h5committest) and other THG machines.
* [svn-r22817] Description:Quincey Koziol2012-09-261-0/+1
| | | | Update CMake files for new encode/decode property list files.
* [svn-r22807] Description:Quincey Koziol2012-09-255-3/+462
| | | | | | | | | | | | | | | | | | | | | Add encode/decode API routines for property lists: H5Pencode/H5Pdecode. Tested on: FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (ostrich) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-ia64 2.6 (ember) w/Intel compilers, w/parallel, C++ & FORTRAN, in production mode Mac OS X/32 10.7.3 (amazon) in debug mode Mac OS X/32 10.7.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode Mac OS X/32 10.7.3 (amazon) w/parallel, in debug mode
* [svn-r22785] HDFFV-8153: Pull POSIX_C_SOURCE define out to separate ↵Allen Byrne2012-09-181-0/+5
| | | | | | variable. Use ADD_DEFINITIONS (${HDF5_EXTRA_C_FLAGS}) in non-fortran CMakeLists.txt folders Tested: jam with intel compilers
* [svn-r22763] Purpose:Jonathan Kim2012-09-141-35/+24
| | | | | | | | | | | | | HDFFV-8143 Provide a routine(s) for telling the user why the library broke collective data access Description: Fixed Daily test failed from the previous commit r22735. (ember) Also changed H5Pget_mpio_no_collective_cause() parameter type from H5D_mpio_no_collective_cause_t to uint32_t due to change to return combined bitmap value which can be not emun defined value. Tested: jam (linux32-LE), koala-pp (linux64-LE), ember, h5committest
* [svn-r22758] Description:Quincey Koziol2012-09-131-0/+3
| | | | | | | | | | | | | Bring generic improvements from encode/decode property list branch to the trunk. This includes a better version of the property list comparison routine, cleaned up compiler warnings, and some cleaned up property list callbacks. Also, started on changes to clean up parallel test output, so that it doesn't report successful tests from each process. Tested on: Mac OSX/64 10.7.4 (amazon) w/debug, GCC 4.7.x, FORTRAN, C++, threadsafe and parallel Linux 2.6/32 (jam) w/debug Solaris 2.7/64 (linew) w/debug
* [svn-r22744] Purpose:Jonathan Kim2012-09-081-0/+4
| | | | | | | | HDFFV-8143 Provide a routine(s) for telling the user why the library broke collective data access Description: Daily test failed from the previous commit r22735. (ember) Skip tests not to disrupt other tests while finding a solution for ember.
* [svn-r22743] Purpose:Jonathan Kim2012-09-071-18/+21
| | | | | | | | | | | | HDFFV-8143 Provide a routine(s) for telling the user why the library broke collective data access Description: Daily test failed from the previous commit r22735. (ember) Follow actual_io function to sync before go futher as this is similar function. Tested: jam (linux32-LE), koala-pp (linux64-LE), ember
* [svn-r22741] Purpose:Jonathan Kim2012-09-051-8/+4
| | | | | | | | | | | HDFFV-8143 Provide a routine(s) for telling the user why the library broke collective data access Description: Daily test failed from the previous commit r22735. (koala , ember) Fixed failure due to not be able to read external-storage file from external test. Tested: jam (linux32-LE), koala-pp (linux64-LE)
* [svn-r22735] Purpose:Jonathan Kim2012-09-043-0/+704
| | | | | | | | | | | | | | | | | | | HDFFV-8143 Provide a routine(s) for telling the user why the library broke collective data access Description: Added H5Pget_mpio_no_collective_cause() function that retrive reasons why the collective I/O was broken during Read/Write IO access. Reasons to break collective I/O: - SET_INDEPENDENT - DATATYPE_CONVERSION - DATA_TRANSFORMS - MPIPOSIX - NOT_SIMPLE_OR_SCALAR_DATASPACES (NULL Space) - POINT_SELECTIONS - NOT_CONTIGUOUS_OR_CHUNKED_DATASET (Compact or External-Storage) - FILTERS Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE)
* [svn-r22709] HDFFV-8129: reconfigured on jam, Remove overloading of ↵Allen Byrne2012-08-232-21/+16
| | | | | | autotools TESTS var, rename configure.in to configure.ac, convert test scripts from hard *.sh to configure managed *sh.in files. Tested: h5committest
* [svn-r22706] Updated autotools: autoconf 2.69, automake 1.12.3, m4 1.4.16, ↵Larry Knox2012-08-221-43/+94
| | | | | | libtool 2.4.2 Tested THG machines.
* [svn-r22651] fix a bug that would skip or include the parallel atomicity ↵Mohamad Chaarawi2012-08-092-11/+15
| | | | test with cmd arguments -o or -x
* [svn-r22388] remove unbalanced bracketAllen Byrne2012-05-221-1/+1
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* [svn-r22385] Skip tests using sparse file writes on Windows. JIRA issue ↵Allen Byrne2012-05-212-1/+9
| | | | (JIRA HDDFV-8064) created.
* [svn-r22287] Description:Quincey Koziol2012-04-161-1/+1
| | | | | | | | Clean up more FUNC_ENTER/FUNC_LEAVE macros and move H5D & H5T code toward the final design (as exemplified by the H5EA & H5FA code). Tested on: Mac OSX/64 10.7.3 (amazon) w/debug & parallel
* [svn-r22247] Added new files and tests to CMakeLists.txtAllen Byrne2012-04-041-0/+1
| | | | Tested: local linux
* [svn-r22244] Description:Quincey Koziol2012-04-031-3/+3
| | | | | | | | | | | | | | | | | | | | Correct use of deprecated API routines in test routine. Tested on: FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (ostrich) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-ia64 2.6 (ember) w/Intel compilers, w/C++ & FORTRAN, in production mode Mac OS X/32 10.6.8 (amazon) in debug mode Mac OS X/32 10.6.8 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r22219] Description:Quincey Koziol2012-03-315-7/+412
| | | | | | | | Merge "file image" changes from feature branch back to trunk. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug (h5committest upcoming)
* [svn-r22170] Removed extraneous svn executable properties from ↵Dana Robinson2012-03-281-0/+0
| | | | non-executable files.
* [svn-r22115] Add 2 new API routines to set/unset file atomicity for files ↵Mohamad Chaarawi2012-03-213-0/+340
| | | | | | | opened with the MPI-IO VFD Add test cases for these two routines Jira issue HDFFV-7961
* [svn-r21804] Update CMake Required version in all folders to match current ↵Allen Byrne2011-12-051-1/+1
| | | | standard 2.8.6
* [svn-r21710] CMake FindMPI module changed to look for fortran libs. Cmake ↵Allen Byrne2011-11-031-2/+2
| | | | | | | | files updated to link with fortran mpi libs. Updated cacheinit.cmake to set num of procs to 3 for hdf testing. Tested: local linux and on windows 7
* [svn-r21667] Update FOLDER solution option for target properties. Added ↵Allen Byrne2011-10-251-1/+2
| | | | | | OPTION command for solution folder and no packaging. Tested: local linux
* [svn-r21613] Ported express test tunings and a minor edit back to John Mainzer2011-10-191-3/+3
| | | | | | testpar/t_shapesame.c tested with h5committest
* [svn-r21442] Description:Quincey Koziol2011-10-013-1/+567
| | | | | | | | | | | | | | | | | | | | | | Check in "actual I/O mode" feature to trunk. Will merge back to 1.8 branch after it bakes over the weekend. Tested on: FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-ia64 2.6 (ember) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.8 (amazon) in debug mode Mac OS X/32 10.6.8 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r21334] HDFFV-7687: add HD macro prefrix to functions and use h5_stat_t ↵Allen Byrne2011-08-303-5/+5
| | | | | | where necessary reviewed
* [svn-r21260] Refactored shape same tests heavily, and added code to skip a ↵John Mainzer2011-08-181-2536/+2765
| | | | | | | | | | | | | | | | | | | | | configurable fraction of the subtests depending on the current express test level. Also added code to display fraction of subtests skipped. The current tables controlling the fraction of tests skipped as a function of express test level is a guess at what will be needed. It will be necessary to tune this table against the express test targets and our worst case system. Initially commit tested on Jam, Koala, and Heiwa, but ran into an unrelated failure on Heiwa (bug reported). Replaced Heiws with Linew and got a clean h5commit test. Also tested parallel on Koala. Initially got very bad results (test timed out roughly 1/3 to 1/2 the way through). Discussed matters with Matthew, and moved the build to the solid state drive on Koala. This dealt with the performance issues completely.
* [svn-r21249] Description: Part II of F2003 branch merge into the trunk.Scot Breitenfeld2011-08-181-0/+3
| | | | | | Ran bin/reconfigure to update the Makefile.in in directories not part of the fortran directory check=in. Updates Makefile.in due to changes made in configure.in for the Fortran 2003 additions. Tested on all platforms run under daily tests.
* [svn-r21228] Added #ifdefs around #include unistd.h and created windows ↵Allen Byrne2011-08-152-0/+5
| | | | | | getlogin() function for building HDF5 parallel on windows. Reviewed and tested locally and tested by user.
* [svn-r21201] Prepend test folder name to perform and testpar cmake testsAllen Byrne2011-08-091-5/+9
| | | | | | | Replace runTest command param spaces with ; Change CTEST_NAME to HDF5 - the project name Tested: local linux, windows
* [svn-r21101] HDFFV-7639Mike McGreevy2011-07-141-159/+102
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Purpose: Remove H5_MPI_SPECIAL_COLLECTIVE_IO_WORKS and H5_MPI_COMPLEX_DERIVED_DATATYPE_WORKS #defines from source. Description: Two advanced parallel functionalities, special collective IO and complex derived datatypes, are not supported by older implementations of mpi, and thus our code limits the use of these features with #ifdefs and has checks in configure to set them (or not). Unfortunately, configure can't actually run a parallel check to see if these features are working (nor not) so it resorts to looking in the config files where they are explicity enabled or disabled based on versions of mpi, sytems being built on, or for no documented reason at all (i.e. just set to on or off as some 'default'). Overriding these settings is easy if need be, provided it is known that it needs to be done to get improved performance, and oftentimes it is not. Most new MPI implementations successfully handle the functionality requested when these #defines are set, and many of the "turn these features off" cases in the config files are for old (> 5 years) versions of MPI and retired systems (such as NCSA's tungsten). Therefore, the decision has been made to remove the support for these old versions of MPI and systems that cannot handle these behaviors. The #ifdefs and supporting setup in the config/ files and configure script has been removed, and the code executed when these options were not set removed from the source. In passing, this commit also cleans up some whitespace issues in both t_mpi.c and H5Dmpio.c. Furthermore, in t_mpi.c, the special collective IO test was not getting regularly run due to it being written to work only with four processes (we regularly test with six, previously with three), and thus it failed when actually run due to an out of bounds data buffer assignment. It has been modified to run at any number of processes greater than four, and the memory problem has been fixed so the test passes. Tested: jam, h5committest, ember
* [svn-r21074] Remove incorrect -p option from test macro. Discovered from ↵Allen Byrne2011-07-081-1/+1
| | | | public 1.8 CDash reports
* [svn-r20627] Add dependency of t_pflush2 on t_pflush1Allen Byrne2011-04-251-0/+2
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* [svn-r20504] Purpose:Mike McGreevy2011-04-141-1/+4
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | General shared library improvements for CYGWIN / AIX Description: Shared libraries are disabled on both CYGWIN and AIX due to inability to build them correctly. Part of the problem in both of these situations is the lack of the libtool flag -no-undefined, which tells libtool that all needed symbols are defined at link time (a requirement on these systems) and that it's okay to build shared libraries. Another problem are lack of dependencies between wrapper libraries and core C HDF5 library. This patch addresses both of these by fixing configure to add in -no-undefined flag for libtool during linking and adds automake dependencies in the Makefile.am files. After testing, both CYGWIN and AIX now generate shared libraries, but there are still some test failures in each. (cache_api, dt_arith, and testerror.sh on CYGWIN, and fortran tests on AIX). Even though the shared libraries are not quite perfect, this is a general improvement to what we had before, so I'm applying the patch anyways. Note that default behavior of shared libraries on these systems being disabled has NOT been changed and requires the use of the --enable-unsupported to attempt to build them. We will need to address the test failures in each architecture prior to formally supporting shared libraries on each. Tested: h5committested & CYGWIN tested (on bangan) (AIX tested by Albert on bp-login2)
* [svn-r20502] Purpose:Mike McGreevy2011-04-141-19/+39
| | | | | | | | | | | | | | | | | | | | | | | | Add "silent make" mode configure option. Description: Automake 1.11 has a new option available that allows for a silent make mode. This functionality needs to be explicitly enabled in configure.in via the use of the automake macro AM_SILENT_RULES, which is what this commit is adding. This introduces a new configure option: --{en|dis}able-silent-rules This option is on by default, and simplies compile and link line outputs when building the library. Disabling this option will print full "verbose" output (i.e., full compile and linking lines for each target). Tested: This was tested on jam & h5committested
* [svn-r20475] Purpose:Mike McGreevy2011-04-111-0/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | - Revise shared Fortran library disabling scenarios in configure - Improve configure output summary Description: Shared Fortran libraries are not supported on Mac, but were being disabled by configure in a way that also forced the C libraries to be static-only. This has been fixed, so now only shared Fortran is disabled while shared C can remain. This prompted two additional changes: 1. While working on the check that addresses whether or not shared Fortran libraries are allowed, removed old and no longer needed check(s) that disable shared Fortran libraries with HP, Intel 8, PGI, and Absoft compilers. (Essentially, Mac is the only situation in which Fortran shared are disabled by configure.) 2. Having two different states of libraries (i.e. shared C library with static-only Fortran library) was not apparent in the configure summary, which labeled all libraries as either shared and/or static. I've added lines to both the C++ and Fortran output sections to list shared/static-ness of these libraries specifically. Additionally, I've made sure that the new --enable-unsupported configure option correctly overrides configure if it tries to disable a shared library. Tested: jam, fred, & h5committest
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