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* [svn-r17576] Simple improvement to clean up go during "make clean"Albert Cheng2009-10-011-2/+2
| | | | | | and removed the redundant cleaning of Makefile. Tested: jam parallel.
* [svn-r16784] Adapted parallel tests to run with arbitrary number of processors.Christian Chilan2009-04-175-166/+178
| | | | Tested on jam and abe.
* [svn-r16342] Description:Frank Baker2009-01-221-1/+1
| | | | | | Changed 'THG' to 'The HDF Group' in various HDF5 source files, most of which are <subdirectory>/COPYING. -- Closes Bugzilla entry 1403.
* [svn-r15710] The GASS and SRB VFD have been retired and removed from theAlbert Cheng2008-09-271-20/+0
| | | | | | | | HDF5 library. The Dependencies files are generated by "make depend". Tested: h5committest, also serial in Kagiso is tested.
* [svn-r14423] Description:Quincey Koziol2008-01-151-1/+1
| | | | | | | | Change the 'coord' parameter for H5Sselect_elements() from 'hsize_t **' to 'hsize_t *' in this branch also. Tested on: Mac OS X/32 10.5.1 (amazon)
* [svn-r14329] Run make depend to regenerate all these Dependencies files afterAlbert Cheng2007-12-071-16/+91
| | | | removing the stream-vfd.
* [svn-r13838] Function H5D_create_chunk_map in H5Dio.c didn't consider the ↵Raymond Lu2007-06-063-0/+218
| | | | | | | H5S_SEL_NONE case. Added it in and added a test for one process not to participate writing or reading data using H5Sselect_none (function none_selection_chunk in testpar/t_dset.c).
* [svn-r13828] Some systems (only SGI Altix ProPack 4 discovered so far) ↵Raymond Lu2007-06-012-0/+54
| | | | | | | | | | | doesn't return correct file size from MPI_File_get_size. Bypass this problem by replacing it with stat. Add an option --disable-mpi-size in configure to indicate this function doesn't work properly. Add a test in testpar/t_mpi.c, too. If it returns wrong file size, print out a warning. Tested on kagiso(parallel), cobalt, copper, and sol.
* [svn-r13791] Add t_filter_read.c to testphdf5.Christian Chilan2007-05-221-1/+1
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* [svn-r13790] Add test_filter_read to testphdf5. Christian Chilan2007-05-221-0/+1
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* [svn-r13789] Add test_filter_read to testphdf5. Christian Chilan2007-05-221-0/+2
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* [svn-r13788] Test parallel read of dataset written serially using several ↵Christian Chilan2007-05-221-0/+465
| | | | (combinations of) filters. Tested on kagiso and copper.
* [svn-r13583] Purpose:Albert Cheng2007-04-041-0/+8
| | | | | | | | | | | | | | Bug problem. Description: CHunk allocation actually does not always work in parallel. See Bug 281 and 636. Case 2 test exposed the problem in an intermittent manner. Skip the test by default but allow it to be tested IF verbose is set to at least low. Platform tested: Kagiso parallel since that is where it sometimes failed. The problem did not show up in copper. The fix (skipping) is straight forwarded. So, no other machine tested.
* [svn-r13318] Updated Copyright notices.Albert Cheng2007-02-154-35/+39
| | | | Tested platform: Kagiso (serial, pp)
* [svn-r13316] Updated Copyright notices.Albert Cheng2007-02-149-18/+27
| | | | Tested platform: Kagiso (serial, pp)
* [svn-r12969] Bug fix.Albert Cheng2006-11-222-5/+4
| | | | | | | | | | | | | | Description: h5_get_file_size() was coded to return 0 if failed but file size can be 0. Changed the failure return value to -1 which is allowed by the returned type of off_t which is a signed type. Also changed the checking code of the stat call to just == 0 since that is how it is defined. Test: Could test it in heping only. Both Sol and Copper failed to compiled due to error in the Direct IO VFD code.
* [svn-r12968] Cleanup.Albert Cheng2006-11-221-22/+0
| | | | h5_mpi_get_file_size() is no longer used. Removed the code.
* [svn-r12639] Frank Baker2006-09-041-0/+16
| | | | | | | | Description: Add per-directory abbreviated copyright notices (abbreviated COPYING files pointing to full notices). Tested: MANIFEST verified; not otherwise tested.
* [svn-r12406] Purpose:Albert Cheng2006-06-061-89/+42
| | | | | | | | | | | | | | Bug fix. Description: It failed when only 1 is used to test. Solution: Cleanup the code a little so that it works for any number of processes to invoke it. Platforms tested: h5committested
* [svn-r12398] Purpose:Albert Cheng2006-06-012-3/+3
| | | | | | | | | | | | | | Bug fix. Description: Sometimes the parallel prefix is given in the form of nfs:/mnt/pfs which if given to a non-MPIO VFD like the default H5Fcreate, it would fail. Called h5_rmprefix which would return the non-prefix component part of the file name which would be okay for the default H5Fcreate and such. Platforms tested: Tested in heping parallel.
* [svn-r12382] Purpose:Albert Cheng2006-05-283-1/+4
| | | | | | | | | | | New feature Description: Added test to verify if the storage space allocation methods are compatible between serial and parallel modes. Platforms tested: Tested on heping, copper in parallel mode.
* [svn-r12381] This commit was manufactured by cvs2svn to create branch ↵cvs2svn2006-05-261-0/+550
| | | | 'hdf5_1_6'.
* [svn-r11865] Purpose:Albert Cheng2006-01-061-6/+2
| | | | | | | | | | | | | | | | | | | | bug fix 504 Description: testpar/t_mpi would hang if $HDF5_NOCLEANUP is set. E.g., % env HDF5_NOCLEANUP=yes mpirun -np 3 ./t_mpi This happened because the environment variables are not exported to all mpi processes by the mpirun command. So, some attempted to do cleanup while others don't and some hang waiting for others to act. Solution: Instead individual program checking getenv, they all just called h5_cleanup no matter. h5_cleanup now uses getenv_all to check the $HDF5_NOCLEANUP if it is in parallel mode. Platforms tested: h5committested, tested pp in heping too.
* [svn-r11570] Purpose:Albert Cheng2005-10-171-0/+13
| | | | | | | | | | | | | | Appearance change. Description: depend1.in: Change the style of the copyright generation commands to a simplier style. Dependencies: Regenerated the Dependencies file. Platforms tested: Tested in heping in serial and parallel modes.
* [svn-r11378] Purpose:MuQun Yang2005-09-084-90/+86
| | | | | | | | | | | | | | | | | | | To support collective IO for irregular selection in the upcoming 1.6.5 release Description: Make the collective IO tests the same as 1.7 branch. The selections are complicated and big. Solution: Platforms tested: AIX 5.1(32bit and 64bit) Linux 2.4(heping)-mpich 1.2.6 Linux 2.4(NCSA teragrid) -mpich 1.2.5 Altrix(cobalt) IRIX 6.5- c compiler version 7.4.3(NCAR SGI) Linux 2.4(tune) - CMPI 2.1.0 Misc. update:
* [svn-r11246] Purpose:Quincey Koziol2005-08-138-434/+434
| | | | | | | | | | | | | | | | | | | | Code cleanup Description: Trim trailing whitespace, which is making 'diff'ing the two branches difficult. Solution: Ran this script in each directory: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r10828] Purpose:Albert Cheng2005-05-311-1/+1
| | | | | | | | | | | | | | | | | | feature. Description: Added two new make check targets, check-s: serial tests check-p: parallel tests. Check will run check-s and check-p, have the same effect as before. Added $TEST_SCRIPTS_PARA for parallel test scripts. Platforms tested: h5committested". Also, tested in heping (serial and pp) to verify with previous test output for consistency. Tested in modi4 for the special case of pmake (in progress.)
* [svn-r10121] Purpose:Albert Cheng2005-03-022-4/+5
| | | | | | | | | | | | | | | | | | typo fix and small improvement. Description: t_coll_chunk.c: ccdataset_vrfy() was using a wrong routine name to identify itself. testphdf5.c: Add a definition of NFILENAME to be the common dimension size of FILENAME[] and filenames[][] since they must have the same first dimension size. Platforms tested: h5committested. Misc. update:
* [svn-r9779] Purpose:Quincey Koziol2005-01-081-0/+40
| | | | | | | | | | | | | | | Remove feature Description: Retire threaded, balanced binary tree code from HDF5 use. Requiescat in pace... Also, regenerate dependencies files. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Too minor to require full h5committesting (the code is already disconnected from everything except its tests)
* [svn-r9729] Purpose:Quincey Koziol2004-12-298-105/+217
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-) Description: Generally speaking, this is the "signed->unsigned" change to selections. However, in the process of merging code back, things got stickier and stickier until I ended up doing a big "sync the two branches up" operation. So... I brought back all the "infrastructure" fixes from the development branch to the release branch (which I think were actually making some improvement in performance) as well as fixed several bugs which had been fixed in one branch, but not the other. I've also tagged the repository before making this checkin with the label "before_signed_unsigned_changes". Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel & fphdf5 FreeBSD 4.10 (sleipnir) w/threadsafe FreeBSD 4.10 (sleipnir) w/backward compatibility Solaris 2.7 (arabica) w/"purify options" Solaris 2.8 (sol) w/FORTRAN & C++ AIX 5.x (copper) w/parallel & FORTRAN IRIX64 6.5 (modi4) w/FORTRAN Linux 2.4 (heping) w/FORTRAN & C++ Misc. update:
* [svn-r9728] This commit was manufactured by cvs2svn to create branch 'hdf5_1_6'.cvs2svn2004-12-291-0/+762
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* [svn-r9538] Purpose:Quincey Koziol2004-11-171-1/+3
| | | | | | | | | | | | | | | | | | | | | | | Code cleanup & optimizations Description: Clean up some of the code in attributes to avoid allocating memory and performing type conversions when the conversion is a noop. Avoid memory allocations of attribute data structures by switching to use library's free list memory allocator routines. Avoid memory allocations of object header continuation data structures by switching to use library's free list memory allocator routines. Rearrange threaded, balanced binary tree macros slightly to avoid some overhead. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Solaris 2.7 (arabica) Too minor to require h5committest
* [svn-r9454] Purpose:Albert Cheng2004-10-221-1/+1
| | | | | | | | | | | | | Improvement. Description: Made all processes print hostname() by default so that it is easier to spot problems. Platforms tested: Tested in copper only. It is a trivial small change. Misc. update:
* [svn-r9359] Purpose:Quincey Koziol2004-10-047-37/+487
| | | | | | | | | | | | | | | Bug fix Description: Relax restrictions on parallel I/O to allow compressed, chunked datasets to be read in parallel (collective access will be degraded to independent access, but will retrieve the information still). Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Solaris 2.7 (arabica) IRIX64 6.5 (modi4) h5committest
* [svn-r9318] Purpose:Albert Cheng2004-09-241-45/+43
| | | | | | | | | | | | | | | | | | | | | | | | Code clean up Description: The tests used to have their own test file names due to the original program layout. Now that it is using the common test interface, individual test can be invoked at will (via -o). There is no need to have different test filenames. Only requirement is that certain read tests must follow immediately the corresponding write test since they use the same file. I have combined all test file names into just one common file name. This reduces the printout of test file name, very beneficial when the test is run by large number of processes. It makes future code maintenance easier too. Platforms tested: Tested in Eirene(PP) only. No h5committest because this is limited to the parallel tests and the changes are trivial. Misc. update:
* [svn-r9235] Purpose:Albert Cheng2004-09-091-9/+6
| | | | | | | | | | | | | | | Shrink HDF5 parallel test (folded what Kent has done in v1.7 to v1.6.) Description: Previously the collective chunk IO tests created and opened four HDF5 files; it turned out that all collective chunk IO tests can use one file for testing. Solution: To use one file for all collective chunk IO tests with trunc option to be set in H5Fcreate. Platforms tested: eirene (no need to use h5committest)
* [svn-r9180] Purpose:Albert Cheng2004-09-011-24/+24
| | | | | | | | | | | | | Text display change Description: Changed the test names to much shorter strings for easier use. Platforms tested: No h5committed test. Only test parallel in eirene. Misc. update:
* [svn-r9142] Purpose:Albert Cheng2004-08-243-98/+94
| | | | | | | | | | | Code cleanup. Removed bunch of old options (r,w,v,i,b,e) that are no longer valid or useful after adopting the general test interface. Moved the test of sizeof MPI_Offset into the test routine itself. Platforms tested: Eirene and Sol using pp mode.
* [svn-r9116] Purpose:Albert Cheng2004-08-192-21/+24
| | | | | | | | | | | | | | | | | | | | | | | | | feature Description: Another revamp of the test interface. TestInit: is used to register Test Program name, test program specific Usage and option parsing routines. TestUsage: will invoke extra usage routine if provided. TestParseCmdLine: will invoke extra option parsing routine if provided. GetTestSummary() and GetTestCleanup() replaces the previous Summary and CleanUp arguments of TestParseCmdLine. test/testhdf5, test/ttsafe.c, testpar/t_mpi.c, testpar/testphdf5.c: All have been updated to use the new Test Routines. testpar/t_mpi.c: Also a fix of a compiler optimization bug when pgcc in Linux is used to compile it. Changed buf[] and expected to unsigned char type to avoid a bug that failed to do sign-extension. Platforms tested: "h5committested" Also tested thread-safe option in eirene.
* [svn-r9114] Purpose:John Mainzer2004-08-181-73/+258
| | | | | | | | | | | | | | | | | | | | | | | | Fix bug/feature which caused testphdf5 to fail when run with more than 32 processes. Description: 32 process limit was a hard coded constant. Solution: Modified most of the routines in t_mdset.c to adapt dynamically to the current number of processes. In passing, I also tidied up a few memory leaks. Platforms tested: copper with a scattering of numbers of processes from 4 to 32, and all numbers of processes from 32 to 64 inclusive. h5committested serial and parallel tests on Eirene Misc. update:
* [svn-r9103] MuQun Yang2004-08-171-11/+12
| | | | | | | | | | | | | | | | | | | | | Purpose: Bug fix. Description: 1. The IF-block of skipping collective chunk IO tests when the number of processes is greater than some number essentially skipped all parallel tests. 2. John tested at copper with the number of processor = 64 and collective chunk IO tests passed, so we increase the number of precessor =24 to 64 for skipping the test. Solution: 1. change the IF block flow so that it only skips collective chunk IO tests when the number of process is greater than 64. Platforms tested: copper(only parallel test, no needs to test oh other platforms). Misc. update:
* [svn-r9082] Purpose:Albert Cheng2004-08-131-29/+26
| | | | | | | | | | Feature Description: Updated to use the new syntax of TestParseCmdLine(). Platforms tested: On eirene both serial and parallel.
* [svn-r9078] Purpose:MuQun Yang2004-08-131-0/+2
| | | | | | | | | | | | | | | For collective chunk IO test, only let the main process(process 0) generate the "skipped message". Description: Solution: Platforms tested: linux 2.4 Too trivial to use h5committest. Misc. update:
* [svn-r9075] Purpose:MuQun Yang2004-08-131-0/+7
| | | | | | | | | | | | | | | | | | | | Parallel HDF5 Collective chunk IO testing message added Description: collective chunk IO tests have been verified with the number of process greater than 24 and the test is very slow with big number of process. That may cause confusions to users who run collective chunk IO tests. Solution: To avoid possible confusions, A if-block will be used to check whether the number of process is greater than 24. If yes, the collective chunk tests will be skipped and a message will be printed out. Platforms tested: To trivial for h5committest,testing platform: eirene. Misc. update:
* [svn-r9072] Purpose:MuQun Yang2004-08-122-6/+21
| | | | | | | | | | | | | | | | | | | | To make collective chunk IO test more general Description: Previous collective chunk IO test only works with number of processor less than 4. In case people would like to test with more processors, more general tests need to be used. Solution: The following changes have been made: 1. Change the way to use discontiguous hyperslab selection to work with larger number of processors, 2. Increase size of data array Now, I can test with processor number = 12; however, the fourth test is very slow to the independent IO write and read. Platforms tested: eirene(only parallel test codes are modified, no need to test on other platforms). Misc. update:
* [svn-r9067] Purpose:Albert Cheng2004-08-111-106/+9
| | | | | | | | | | | | | | | | | | Cleanup and bug fix. Description: Bug fix: the checking of dobig test was done in the wrong place such that tests added after it would be run even for the -b option. Moved the dobig test checking to AFTER all tests are added. Cleanup: Removed old code now that the new way is working fine. Platforms tested: Tested in Eirene parallel only. Misc. update:
* [svn-r9051] Purpose:Albert Cheng2004-08-081-2/+4
| | | | | | | | | | | | | Feature Description: Added a feature such that if the test name starts with '-', do not run it by default. Platforms tested: Eirene both serial and parallel. Misc. update:
* [svn-r8989] Purpose:Quincey Koziol2004-08-025-31/+85
| | | | | | | | | | | | | | Backport feature Description: Backport Kent's collective chunk I/O work to date into the release branch. Also, minor code cleanups, etc. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel IRIX64 6.5 (modi4) h5committested
* [svn-r8985] Purpose:Quincey Koziol2004-08-021-18/+18
| | | | | | | | | | | | | | | | | | | | | Bug fixes & code cleanups Description: Backport MPI-I/O changes from the development branch to the release branch in preparation for bringing Kent's collective chunk I/O changes back. Removed last vestiges of FPHDF5 from this branch, as it was never working here. Various code cleanups & syncrontizations to better align with development branch code and reduce diffs. Regenerate dependencies. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel IRIX64 6.5 (modi4) h5committested
* [svn-r8984] This commit was manufactured by cvs2svn to create branch 'hdf5_1_6'.cvs2svn2004-08-021-0/+489
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