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* [svn-r27179] Merge 27162 & 27163 from trunk:Mohamad Chaarawi2015-06-104-9/+97
| | | | | | | | fix for HDFFV-9412: - Check for mpi is_initialized and is_finalized before making MPI calls in init/terminate of HDF5. - Add a test to make sure we can make serial HDF5 calls from rank 0 after MPI_Finalize is called. tested with h5committest
* [svn-r27165] Merge 27133 & 27158 from trunk:Mohamad Chaarawi2015-06-081-12/+12
| | | | | | | | | - Add a new attribute function characterstic for format: * H5_ATTR_FORMAT(X,Y,Z) __attribute__((format(X, Y, Z))) - Rename UNUSED attribute characterstic to H5_ATTR_UNUSED. - Rename NORETURN attribute characterstic to H5_ATTR_NORETURN tested with h5committest.
* [svn-r26728] Merge trunk reviwions 26669 and 26670.Larry Knox2015-04-041-1/+0
| | | | | | Removed from configure.ac VPATH section, LONE_COLON check and checks for redundant addition of /usr/include and /usr/lib to compile flags, with reconfigure. Tested h5committest
* [svn-r26697] HDFFV-9131: Remove obsolete/unneeded sections.Allen Byrne2015-04-011-2/+0
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* [svn-r26600] Fix CMake target calls to add new parameterAllen Byrne2015-03-261-2/+2
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* [svn-r26582] Merge r26509 from trunkJerome Soumagne2015-03-251-2/+0
| | | | Run reconfigure after merges from autotools_rework branch
* [svn-r26413] Merge of r26276 from trunk.Dana Robinson2015-03-101-2/+1
| | | | | | | | | | | | | | | | | | | | | | Cleans up time functions in the autotools input files. - Lumps all the time functionality together in configure.ac. This was previously more spread out due to Solaris issues with the ordering of certain checks. - Removes processing that handles __tm_gmtoff members of struct tm. (libc-4) - Removes BSDgettimeofday(). (IRIX 5.3) - Removes timezone struct processing in gettimeofday(). (considered harmful) Fixes: HDFFV-9083 and HDFFV-9085 Tested on: h5committest OS X (quail) Solaris (emu)
* [svn-r26395] Merges r26329 from trunkDana Robinson2015-03-093-36/+24
| | | | | | | | | | | | | | Removed the configure option that allows selective disabling of individual internal filters (fletcher32, shuffle, etc.). This feature mucked up the code with a lot of #ifdefs, saved very little space and was not scalable to a general scheme for library size reduction. We've decided to remove the feature while we investigate a more general scheme for decreasing the library size. Fixes: HDFFV-9086 Tested on: h5committest
* [svn-r26371] Update cmake mininum versionAllen Byrne2015-03-051-1/+1
| | | | Update windows wix cpack process.
* [svn-r26314] Brought autotools related changes from the trunk to the branch, ↵Scot Breitenfeld2015-02-261-1/+2
| | | | r26188 r26280
* [svn-r26304] bring 26303 from trunk:Mohamad Chaarawi2015-02-251-3/+3
| | | | remove files with .clog2 extension generated by MPE when doing make clean
* [svn-r26298] merge 26279 from trunk.Mohamad Chaarawi2015-02-258-23/+300
| | | | | | HDFFV-883: attach callback to terminate HDF5 library when MPI_COMM_SELF is destroyed on MPI_Finalize. tested h5committest.
* [svn-r26224] merge 26180 from trunk:vms_last_support_1_8Mohamad Chaarawi2015-02-182-2/+8
| | | | | | | | | | configure fixes for HDFFV-9068,9069,9096,9097,9135 from autotools_rework branch: - Remove Infering parallel compilers (C and Fortran) from configure.ac - Remove restriction to build shared with parallel - Cleanup parallel sections in configure.ac - remove large file support checks - MPE fixes.
* [svn-r25965] - build out unbuffered stdout/err for windowsMohamad Chaarawi2015-01-082-4/+8
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* [svn-r25964] - merge 25963 from trunk:Mohamad Chaarawi2015-01-081-40/+40
| | | | | | | - Do not remove the prefix in the chunk alloc file, otherwise it makes the H5Fcreate fail when prefix is specified. - fix tabbing in that file too. tested: jam w/ parallel
* [svn-r25791] merge 25790 from trunk.Mohamad Chaarawi2014-11-051-2/+8
| | | | | | | | fix bug in shapesame test where test fails with more than 10 procs. This is a fix in the test itself and does not have to do with the library code. tested cloud machine with parallel.
* [svn-r25780] merge 25779 from trunk.Mohamad Chaarawi2014-11-041-4/+11
| | | | | | fix bug in parallel tests where a compact dset is being created proportional to the process count without regard to the 64KB limit for compact datasets.
* [svn-r25682] bring 25651 and 25659 from trunk.Mohamad Chaarawi2014-10-072-2/+7
| | | | | Fix for: HDFFV-8715 HDF5_PARAPREFIX is ignored in parallel dense attribute and performance tests.
* [svn-r25574] Merge 25573 from trunk:Mohamad Chaarawi2014-09-051-1/+1
| | | | - fix error output when dataset verify detects wrong data.
* [svn-r25519] HDFFV-8880: Remove t_posix_compliant test referencesAllen Byrne2014-08-061-5/+0
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* [svn-r25497] Description:Quincey Koziol2014-07-306-709/+708
| | | | | | | | | | Merge changes that correspond to the 64-bit ID changes (without the actual switch to 64-bit IDs) to the 1.8 release branch. (Plus a few minor cleanups and alignments with the trunk that aren't on the branch) Tested on: Mac OSX/64 10.9.4 (amazon) w/C++ & FORTRAN (h5committested on branch already for a week)
* [svn-r25404] add serial and parallel regression tests for zero dset ↵Mohamad Chaarawi2014-07-103-0/+61
| | | | | | read/write bug. (merged from trunk)
* [svn-r25402] Bring 25397/8 from trunk:Mohamad Chaarawi2014-07-103-177/+145
| | | | | | | - remove configure checks for MPI_File_get_size and Big MPI_File_set_size as they are supported by MPIO implementations today. - fix bug in t_mpi.c (HDFFV-8856) tested with h5committest.
* [svn-r25222] Merge cmake_ext_mod into 1.8Allen Byrne2014-05-272-3/+6
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* [svn-r25106] Removed LT_ADD_LIBHDF5_DEPENDENCY configure conditional to roll ↵Larry Knox2014-04-251-1/+0
| | | | | | | | back fix for removing rpaths from lib files. The fix also removed dependencies on libhdf5, etc. when the --disable-sharedlib-rpath configure option was invoked. Added instead configure variable hardcode_into_lib=no. This removes rpath from lib files on Linux and solaris machines. Tested with h5committest on jam, koala, ostrich and platypus (cmake), and on emu and kite.
* [svn-r24980] HDFFV-8290: Merge automake 1.14.1 changes from trunkAllen Byrne2014-04-073-68/+450
| | | | Tested: h5committest
* [svn-r24915] Correct merge mistakeAllen Byrne2014-03-271-1/+0
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* [svn-r24906] Merge latest CMake changes from trunk.Allen Byrne2014-03-262-33/+34
| | | | Tested: local linux
* [svn-r24878] Description:Quincey Koziol2014-03-2414-1330/+78
| | | | | | | | | | | | | | | | | | | | | Bring r24864 from trunk to 1.8 branch: Remove all traces of MPI-POSIX VFD and GPFS detection/code. Remove remaining traces of stream VFD. Remove testpar/t_posix_compliant test (it's not actually verifying anything). Clean up H5D__mpio_opt_possible() further. Moved environment variable that disables MPI collective operations into MPI-IO VFD (instead of it being in src/H5S.c). A few other small code cleanups. Tested on: Mac OSX/64 10.9.2 (amazon) w/parallel & serial (daily tested on trunk)
* [svn-r24785] Description:Quincey Koziol2014-03-123-123/+725
| | | | | | | | | | | | | Bring r24769 & r24772 from trunk to 1.8 branch: Check in Mohamad's changes to support collective I/O on point selections, along with some other minor cleanups. Correct some dynamically sized arrays that fail on Windows. Tested on: Mac OSX/64 10.9.2 (amazon) w/parallel (And has been through the daily test regime on the trunk)
* [svn-r24732] Fix for reconfigure, which fails because ↵Larry Knox2014-02-221-0/+1
| | | | | | LT_ADD_LIBHDF5_DEPENDENCY is used in Makefiles but the declaration in configure.ac is missing. Copied declaration from trunk. Tested with h5committest on jam ostrich koala and platypus(cmake).
* [svn-r24614] Bring 24612 from trunk:Mohamad Chaarawi2014-01-063-28/+30
| | | | | | | | fix bugs in parallel tests exposed in corner cases when running with 1 or 2 processes. First bug is in testpar/t_mdset.c, where the test reports an error in addition to skipping the test if there are less than three procs. Fix to just skip the test. Second bug is in testpar/t_dset.c in actual_io_mode tests, where incorrect expected value for IO mode was set if the number of procs running the test is 1. tested with h5committest.
* [svn-r24084] Correct merge mistakeAllen Byrne2013-08-291-1/+0
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* [svn-r24072] Merge trunk cmake changes to 1.8 branch. Allen Byrne2013-08-262-54/+69
| | | | | | | Also add default switch blocks to h5import. Merge h5dump any_path option from trunk. Tested: local linux
* [svn-r23771] HDFFV-8434,-8437,-8445,-8447,-8461: Merge changes from Trunk.Allen Byrne2013-06-141-0/+2
| | | | Tested: local linux
* [svn-r23545] Description:Quincey Koziol2013-04-041-1/+1
| | | | | | | | | Bring r23544 from trunk to 1.8 branch: Correct API version mistake w/H5Acreate -> H5Acreate2 Tested on: Mac OSX/64 10.8.3 (amazon) w/parallel
* [svn-r23535] Description:Quincey Koziol2013-04-034-119/+65
| | | | | | | | | | | Bring r23529 from trunk to 1.8 branch: Stop aliasing property to indicate internal collective metadata operations with property to perform collective raw data operations from the application. Tested on: Mac OSX/64 10.8.3 (amazon) w/parallel (daily tests on trunk)
* [svn-r23324] Snapshot version 1.8 release 11 (snap11)HDF Tester2013-03-041-1/+1
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* [svn-r23211] Merge trunk CMake changes for minimum cmake version of 2.8.10. ↵Allen Byrne2013-01-311-1/+1
| | | | | | This was prompted by HDFFV-8227, OS X requires latest version of cmake for proper support. Tested: local linux
* [svn-r23011] Purpose:Jonathan Kim2012-11-054-88/+63
| | | | | | | | | | | | HDFFV-8146 - Remove "multi-chunk IO without optimization" sub-feature from MPI I/O optimization for chunked dataset feature Description: The “multi-chunk IO without optimization” feature is removed and made the related xfer property (H5FD_MPIO_CHUNK_MULTI_IO) go directly to “multi-chunk-io” feature. Also update/fix/cleanup testings (chunk collective IO and actual chunk opt mode) accordingly. Merged from HDF5 trunk r22992. Tested: jam-pp (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), fred (mac64-LE), linew (solaris-BE), koala-pp, wallby-pp, cmake (jam-pp), Windows (32-LE cmake)
* [svn-r22788] HDFFV-8153: Pull POSIX_C_SOURCE define out to separate ↵Allen Byrne2012-09-191-0/+5
| | | | | | variable. Use ADD_DEFINITIONS (${HDF5_EXTRA_C_FLAGS}) in non-fortran CMakeLists.txt folders Tested: local
* [svn-r22783] Purpose:Jonathan Kim2012-09-181-1/+1
| | | | | | | | | | | HDFFV-8143 Provide a routine(s) for telling the user why the library broke collective data access Description: Changed to use H5Dopen2() instead of H5Dopen(), which caught by daily test on jam. This is based on previous commit r22780. Tested: jam-pp (linux32-LE)
* [svn-r22780] Purpose:Jonathan Kim2012-09-173-0/+696
| | | | | | | | | | | | | | | | | | | | | HDFFV-8143 Provide a routine(s) for telling the user why the library broke collective data access Description: Added H5Pget_mpio_no_collective_cause() function that retrive reasons why the collective I/O was broken during Read/Write IO access. Reasons to break collective I/O: - SET_INDEPENDENT - DATATYPE_CONVERSION - DATA_TRANSFORMS - MPIPOSIX - NOT_SIMPLE_OR_SCALAR_DATASPACES (NULL Space) - POINT_SELECTIONS - NOT_CONTIGUOUS_OR_CHUNKED_DATASET (Compact or External-Storage) - FILTERS Merged from HDF5 trunk r22735, r22741 , 22743, 22744, 22763. Tested: jam-pp (linux32-LE), koala-pp (linux64-LE), wallaby-pp
* [svn-r22759] Description:Quincey Koziol2012-09-131-0/+3
| | | | | | | | | | | | | | Bring r22758 from trunk to 1.8 branch: Bring generic improvements from encode/decode property list branch to the trunk. This includes a better version of the property list comparison routine, cleaned up compiler warnings, and some cleaned up property list callbacks. Also, started on changes to clean up parallel test output, so that it doesn't report successful tests from each process. Tested on: Mac OSX/64 10.7.4 (amazon) w/debug, GCC 4.7.x, FORTRAN, C++, threadsafe and parallel (h5committested on trunk)
* [svn-r22724] Convert tests to *.sh.in.Allen Byrne2012-08-282-21/+16
| | | | | | | | Convert configure.in to configure.ac. Align TESTS usage with autotools convention. Update all references from configure.in to configure.ac Tested: h5committest
* [svn-r22711] Updated autotools: autoconf 2.69, automake 1.12.3, m4 1.4.16, ↵Larry Knox2012-08-231-43/+94
| | | | | | libtool 2.4.2 Tested THG machines.
* [svn-r22652] bring 22651 to branchMohamad Chaarawi2012-08-092-11/+15
| | | | fix a bug that would skip or include the parallel atomicity test with cmd arguments -o or -x
* [svn-r22402] HDFFV-8064: Merge windows #ifdef blocks to 1.8Allen Byrne2012-05-242-3/+12
| | | | Trunk dailies passed
* [svn-r22291] Description:Quincey Koziol2012-04-171-1/+1
| | | | | | | | | | Bring r22287 from trunk to 1.8 branch: Clean up more FUNC_ENTER/FUNC_LEAVE macros and move H5D & H5T code toward the final design (as exemplified by the H5EA & H5FA code). Tested on: Mac OSX/64 10.7.3 (amazon) w/debug & parallel
* [svn-r22248] Added new files and tests to CMakeLists.txtAllen Byrne2012-04-041-0/+1
| | | | Tested: local linux
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