| Commit message (Collapse) | Author | Age | Files | Lines |
|---|
| |
|
|
|
|
|
|
|
| |
changed to use system supported MPI library. The path to it is
changed slightly too. Updated all the paths variables.
Also updated to reflect the new program source files structure.
Platform tested: Intel Red
|
| | |
|
| |
|
|
|
|
|
|
| |
big testphdf5.c file. Broke it into modules of related routines.
testphdf5.c -- main routine and global variables initialization plus
some ulitility routines.
t_file.c -- tests of file operations using parallel I/O.
t_dset.c -- tests of datasets operations.
|
| | |
|
| |
|
|
| |
for distribution.
|
| |
|
|
| |
to purge the file.
|
| |
|
|
|
| |
assert. That allowed more customization in the future (like
allow different levels of verboseness.)
|
| |
|
|
|
|
|
|
|
|
| |
New feature
Solution:
Parallel HDF5 support on Intel TFLOPS machine using PFS file system.
Platform tested:
Intel TFLOPS (ASCI Red)
|
| | |
|
| |
|
|
|
|
| |
it is hard to keep an equivalent sequential version. Its useness
has diminshed too now that the basic parallel access features
are working.
|
| |
|
|
|
| |
Changed the data file names to *.h5f to avoid potential mixup
with the split file convention.
|
| |
|
|
|
|
|
| |
Added routines to fill in test data and to verify data read back.
Would verify data and report errors when detected.
Added verbose flag to control output "volume"--be more verbose
only if it is run with -v option.
|
| | |
|
| |
|
|
|
|
|
| |
specifically
instead of by default. It is getting harder to maintain a serial
version of testphdf. May have to drop it later.
|
| |
|
|
| |
COMM_WORLD.
|
| |
|
|
|
|
| |
Added #define FAIL patch due to confusion that API's are
still defined to return FAIL while FAIL has been undefined
from public.h.
|
| | |
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
----------------------
./configure.in
./src/H5Fprivate.h
./src/H5Fsec2.c
We now detect and use lseek64() on systems that have it (e.g.,
Irix64) and are able to generate >2GB files on Irix XFS file
systems (and anything else that supports large files). This
change also removed some warning messages from the Irix `-64'
compiler.
> $ ls -l istore.h5
> -rw-r--r-- 1 matzke meshtv 8605436856 Feb 17 14:03 istore.h5
./configure.in
./src/H5Fprivate.h
./src/H5Fstdio.h
We now detect and use fseek64() on systems that have it (e.g.,
Irix64) and are able to generate >2GB files on Irix XFS file
systems (and anything else that supports large files). This
change also removed some warning messages from the Iris `-64'
compiler.
./src/H5E.c
./src/H5Epublic.h
Added the H5E_OVERFLOW error to signal file address overflow.
./src/H5Fpublic.h
./examples/h5_chunk_read.c
./examples/h5_compound.c
./examples/h5_extend_write.c
./examples/h5_group.c
./examples/h5_read.c
./examples/h5_write.c
./html/Datasets.html
./html/Files.html
./html/H5.api.html
./html/H5.intro.html
./html/H5.sample_code.html
./html/ph5example.c
./html/review1.html
./test/cmpd_dset.c
./test/dsets.c
./test/extend.c
./test/tfile.c
./test/th5p.c
./test/theap.c
./test/tohdr.c
./test/tstab.c
./testpar/phdf5.c
Renamed file access constants to follow the naming scheme.
Also changed the base names a little to be more accurate as to
what they do. The old names H5ACC_WRITE and H5ACC_OVERWRITE
will temporarily work.
H5ACC_DEFAULT --> H5F_ACC_RDONLY for H5Fopen()
H5ACC_DEFAULT --> H5F_ACC_EXCL for H5Fcreate()
H5ACC_WRITE --> H5F_ACC_RDWR
H5ACC_OVERWRITE --> H5F_ACC_TRUNC
Albert or Kim: The H5ACC_INDEPENDENT and H5ACC_COLLECTIVE
macros in H5Fpublic.h should be an enum typedef and have names
more like H5F_MPIO_INDEPENDENT and H5F_MPIO_COLLECTIVE. Also
change the access_mode argument of H5Cset_mpio().
H5Fcreate() and H5Fopen() are more strict now about which
flags are acceptable for the operation.
./src/H5Fprivate.h
./src/H5F.c
./src/H5C.c
Changed the file access template to make it more general. A
union contains a struct for each type of low-level driver and
the default template is initialized at run-time.
./src/H5Fpublic.h
./src/H5F.c
Added H5Fget_access_template() and cleaned up
H5Fget_create_template().
./src/H5C.c
The H5Cset_mpi() no longer trashes the file access template
when an error is detected. We check for errors and *then*
update the file access template.
Added H5C_close() so Albert and Kim have a place to release
the MPI communicator and info from the file access property
list.
Kim or Albert: I notice in H5Cset_mpi() you copy the MPI
communicator. Do you need to do something similar in
H5C_copy()?
./src/H5F.c
Added more error checking for the file creation and access
property lists because it used to be possible to make the
library dump core by swapping the creation and access property
list ID numbers of H5Fcreate().
./test/istore.c
./test/tfile.c
./test/th5p.c
./test/theap.c
./test/tohdr.c
./test/tstab.c
./testpar/testphdf5.c
One must pass H5C_DEFAULT as the file creation or access
property list in order to get the default property list. It
is no longer possible to pass zero or any other arbitrary bad
object ID.
./src/H5Fcore.c
./src/H5Ffamly.c
./src/H5Flow.c
./src/H5Fmpio.c
./src/H5Fsec2.c
./src/H5Fsplit.c
./src/H5Fstdio.c
./src/H5MF.c
The file access property list is passed to all H5F_low_...()
functions and to the drivers.
./src/H5Fcore.c
The block size can be set at run time on a per-file basis
instead of at compile time across all files. The "5000 items in
a group test" now takes 1.6 seconds.
./src/H5private.h
Removed inclusion of mpi.h and mpio.h since they're included
from H5public.h.
./src/H5Cpublic.h
./src/H5C.c
Added H5Cset_stdio(), H5Cset_sec2(), H5Cset_core(),
H5Cset_split(), and H5Cset_family() in addition to the
H5Cset_mpio() that Kim and Albert already wrote. We still
need the H5Cget_driver() and an H5Cget...() counterpart for
each of those functions. The split and family drivers still
need a little work but I'm checking this in anyway.
|
| | |
|
| | |
|
| |
|
