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* Merge #2198 CMake MPI link (#2217)Allen Byrne2022-11-081-4/+4
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* Run bin/reconfigure to propagate fortran mod change to configure and (#1952)Larry Knox2022-07-291-0/+1
| | | Makefile.in files.
* clang 13 format #1933 (#1941)Allen Byrne2022-07-2812-159/+167
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* Add missing files for enabling doxygen and run bin/reconfigure. (#1246)Larry Knox2021-12-021-2/+49
| | | | | | * Add missing files for enabling doxygen and run bin/reconfigure. * Make default to build high-level tools the same as default for high-level library.
* Merge multiple PRs to 1.8 (#1230)Allen Byrne2021-11-251-2/+1
| | | | | Merge Fix Fortran REGEX and newlines #1226 Merge Github #969 Use stdout instead of file for configure check #1089 Merge Consolidate VFD create list macro #1132
* 1.8 Merge cmake and flag changes from develop (#1119)Allen Byrne2021-10-221-17/+3
| | | | | | | * Merge cmake and flag changes from develop * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* 1.8 Merge HDFFV-11266 - add option to build HL tools #1018 (#1022)Allen Byrne2021-09-171-0/+1
| | | | | | | * Merge HDFFV-11266 - add option to build HL tools #1018 * Update configure and Makefile.ins with bin/reconfigure. Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
* 1 8 update copyright headers (#1004)Larry Knox2021-09-161-1/+1
| | | | | | | | | | | | | | | * Update copyright headers with reproduction notice in 5 files (#993) * Update copyright headers with reproduction notice in 5 files that did not match terms in COPYING file . * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Commit changes to Makefile.ins and 4 src/H5E*.h files from running bin/reconfigure. Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Hdf5 1 8 Fix tools test (#797)Allen Byrne2021-06-241-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Update supported platforms * Merge PR#3 changes from develop * # WARNING: head commit changed in the meantime Merge gcc 10 diagnostics option from develop Merge CMake changes from develop Merge warnings from develop Merge #318 OSX changes from develop Merge tools changes from develop Merge test macros from develop * Format updates * Fix missing semicolon and format fix * Format update * Correct actions, remove java option * Update autotools build files * Add testfiles * Fix configure issue with make flags * Init fapls to default * Update generated files and fix h5repack id closure * update format * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup whitespace cleanup tools sync * format alignment * initialize vars * revert H5private change * Merge #380 from develop * Split format source and commit changes on repo push * Change windows TS to use older VS. * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update unsupported types with precision * Add "option" command for clang options * CMake merges from develop h5cc scripts * Updates from develop and printf formatters * Committing clang-format changes * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Enable fortran for gcc action * Refactor Fortran CMake config tests and CMake test args * Update code owners * Add known problem * Use only core library for testing dynamic plugins. CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Hdf5 1 8 merges from develop and format specifier updates (#670)Allen Byrne2021-05-252-21/+23
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Update supported platforms * Merge PR#3 changes from develop * # WARNING: head commit changed in the meantime Merge gcc 10 diagnostics option from develop Merge CMake changes from develop Merge warnings from develop Merge #318 OSX changes from develop Merge tools changes from develop Merge test macros from develop * Format updates * Fix missing semicolon and format fix * Format update * Correct actions, remove java option * Update autotools build files * Add testfiles * Fix configure issue with make flags * Init fapls to default * Update generated files and fix h5repack id closure * update format * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup whitespace cleanup tools sync * format alignment * initialize vars * revert H5private change * Merge #380 from develop * Split format source and commit changes on repo push * Change windows TS to use older VS. * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update unsupported types with precision * Add "option" command for clang options * CMake merges from develop h5cc scripts * Updates from develop and printf formatters * Committing clang-format changes * Issue #669 remove version from pkgcfg filename * remove version from h5cc script Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* 18 copying update (#565)Larry Knox2021-04-221-13/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * close #195. (#196) * Update HDF5PluginMacros.cmake * Update HDF5PluginMacros.cmake * Restores maintainer mode in the autotools (#200) Maintainer mode should be enabled in development branches. Also adds helpful commenting. Add script bin/switch_maint_mode. Add file changes generated by bin reconfigure in src/H5Edefin.h src/H5Einit.h src/H5Epubgen.h src/H5Eterm.h * Update MANIFEST for switch_maint_mode. * Update so numbers to match 1.8.22 release. * Updated configure with reconfigure. * Updates and corrections following HDF5 1.8.22 release. * Commit Makefile.ins with so version numbers updated by bin/reconfigure. * Fix undefined left shifting of negative numbers (#338) Undefined Bahavior Sanitizer errored here about left shifting negative numbers. * Update top-level COPYING file and remove COPYING files from subdirectories. * Update top-level COPYING file and remove COPYING files from subdirectories (#561) * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING (license) file. * Add release_docs/code-conventions.md file. * Add script to test h5py. * Fix script error. * Add file h5pytest.yml. * Test declaration of counter variables in for loops. * Committing clang-format changes * Committing clang-format changes * Added [] to line 126 of H5LTanalyze.l. Ran bin/genparser with flex v2.6.4 and Bison v3.0.4 on jelly. * Revert "Added [] to line 126 of H5LTanalyze.l." This reverts commit e4a9cee441efa75b16a8ee030c86189e186dd266. * Revert extra commits to match canonical develop. * Update top-level COPYING file and remove COPYING files from subdirectories. * Remove subdirectory COPYING files from MANIFEST. Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Remove non-existant file from MANIFEST. Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> Co-authored-by: Sean McBride <sean@rogue-research.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* 1 8 Merge dev changes for long double and cmake (#548)Allen Byrne2021-04-201-1/+4
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Update supported platforms * Merge PR#3 changes from develop * # WARNING: head commit changed in the meantime Merge gcc 10 diagnostics option from develop Merge CMake changes from develop Merge warnings from develop Merge #318 OSX changes from develop Merge tools changes from develop Merge test macros from develop * Format updates * Fix missing semicolon and format fix * Format update * Correct actions, remove java option * Update autotools build files * Add testfiles * Fix configure issue with make flags * Init fapls to default * Update generated files and fix h5repack id closure * update format * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup whitespace cleanup tools sync * format alignment * initialize vars * revert H5private change * Merge #380 from develop * Split format source and commit changes on repo push * Change windows TS to use older VS. * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update unsupported types with precision Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* HDF5 1 8 merge of recent changes and tools (#353)Allen Byrne2021-02-225-23/+22
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Update supported platforms * Merge PR#3 changes from develop * # WARNING: head commit changed in the meantime Merge gcc 10 diagnostics option from develop Merge CMake changes from develop Merge warnings from develop Merge #318 OSX changes from develop Merge tools changes from develop Merge test macros from develop * Format updates * Fix missing semicolon and format fix * Format update * Correct actions, remove java option * Update autotools build files * Add testfiles * Fix configure issue with make flags * Init fapls to default * Update generated files and fix h5repack id closure * update format
* Update HDF5 1.8 copyright headers with updated copyright URL (#148)Larry Knox2020-12-0426-26/+26
| | | | | | | * Update URL for COPYING file in copyright headers. * Make fortran copyright headers uniformly spaced. * Update url for Copyright file in c++/src/footer.html.
* Multiple changes to bring branch up-to-date (#87)Allen Byrne2020-11-201-2/+2
| | | | | Correct TARGET variable and CMake config file location. Add option to allow filter plugins to be built inline. Update CMake tools macros.
* Source formattedAllen Byrne2020-10-0120-10522/+8750
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* Merge clang-format changes from developAllen Byrne2020-10-012-4/+19
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* Update configure and Makefile.ins after bin/reconfigure.Larry Knox2020-06-221-1/+2
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* Yanked all MPI-1 callsDana Robinson2020-05-291-10/+10
| | | | Added batch scripts in bin/batch.
* Fix ifort warning flag.Larry Knox2020-05-041-0/+3
| | | | | | | | Restore AC_DEFUN([PAC_PROG_FC_DEFAULT_REALisDBLE] in m4/aclocal_fc.m4. Add --enable-symbols, --enable-profiling, and --enable-optimization options to autotools configure; all configure flags for --enable-production and --disable-production should match HDF5 1.10 and 1.12 production and debug default flags.
* Update to use optimization flags, C++ error flags, and correctLarry Knox2020-04-301-0/+2
| | | | libhdf5.settings.in to remove unworkable changes.
* Remove verbose assignments in smoke_check 3 and 5 functions.Larry Knox2020-04-291-2/+0
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* Resolve warning errors from -Werror= flags:Larry Knox2020-04-292-2/+8
| | | | | | | -Werror=bad-function-cast -Werror=bad-function-cast -Werror=implicit-function-declaration -Werror=nested-externs
* TRILAB-192 - merge changes from developAllen Byrne2020-04-071-0/+2
| | | | Single source, config files, for warnings for both autotools and CMake. Update CMake libraries, tools, tests to use correct flags.
* Autotools reconfigure updateAllen Byrne2020-03-311-1/+3
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* Merge changes from other branchesAllen Byrne2020-02-291-1/+1
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* revert type castkmu2020-02-281-3/+3
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* Merfge changes to CMake test options and add sanitizersAllen Byrne2020-01-201-1/+3
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* Merge pull request #2244 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/intel_warnings ↵Kimmy Mu2020-01-101-2/+2
| | | | | | | to develop * commit '6b1b4b3c0bdd803835efe8c531965bb9900a5363': fix test assert fail error
* Merge pull request #2071 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/intel_warnings ↵Kimmy Mu2020-01-102-6/+6
| | | | | | | | | | | | | | | | | | | | | | to develop * commit '0a2bb11b248df6841daabca3970df5d8504adfc7': address problems from comments fix and address comments change according to previous comments add missing piece remove unnecessary check macro fix intel compile warnings Revert "fix warnings from Intel compiler" Revert "fix warnings and some text alignment" Revert "let hdf5 pick up the right compiler in Intel environment" Revert "fix issues from previous PR comments" Revert "using a different MACRO" using a different MACRO fix issues from previous PR comments let hdf5 pick up the right compiler in Intel environment fix warnings and some text alignment fix warnings from Intel compiler
* Fix MPI depends nameAllen Byrne2019-10-231-0/+3
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* Ran bin/reconfigurebyrn2019-10-071-0/+3
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* make check should run testpflush1 and 2 with testpflush.sh script instead of ↵Larry Knox2019-08-282-12/+28
| | | | running them directly.
* Add changes to Makefile.in files and four H5e*.h files from running ↵Larry Knox2019-08-281-4/+5
| | | | bin/reconfigur.
* Add script and update mostly whitespaceAllen Byrne2019-08-2810-293/+274
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* fix get gethostname for windowsAllen Byrne2019-08-281-0/+2
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* OESS-29 Fix shared MPI builds, more HD prefixAllen Byrne2019-08-226-155/+156
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* Fix parallel compile errorsAllen Byrne2019-08-212-583/+560
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* Mostly whitespace plus fix broken perf_serialAllen Byrne2019-08-1511-4786/+4635
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* Merge of HDFFV-10845, 10529 from developAllen Byrne2019-07-273-68/+148
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* Reconfigured autoconf filesdpopat2019-07-191-0/+2
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* Correct cmake syntaxAllen Byrne2019-04-111-1/+1
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* Correct test nameAllen Byrne2019-04-101-1/+1
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* Merge in CMake changes from developAllen Byrne2019-04-042-8/+64
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* Merge CMake changes from 1.10 to 1.8Allen Byrne2018-10-021-20/+17
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* Change CMake min to 3.10Allen Byrne2018-03-091-1/+1
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* HDFFV-10392,10393,01385 merge from developAllen Byrne2018-01-221-2/+0
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* Fix link_libs and static CRT fortranAllen Byrne2018-01-051-2/+2
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* Update link target commandsAllen Byrne2017-12-211-2/+8
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* Add assignment to get value from environment variable realtimeOutput.lrknox2017-12-041-22/+56
| | | | Propagate changes to Makefile.ins with bin/reconfigure.
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