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* [svn-r10204] Purpose:MuQun Yang2005-03-111-0/+189
| | | | | | | | | | | | | | | | | | | | | | Provide a way to warn users on the usage of collective IO because of potential MPI-IO bugs for some platforms. Also provide a way for users to give us feedback if the vendor has already fixed the problem so that we can turn off the hard-code macro in our configure description file. Description: See above. Solution: Use a simple MPI complicated derived datatype program to check whether derived data type works for this MPI-IO package. Print out some messages to warn users if not working as we had expected. Platforms tested: AIX 5.1(copper) and Linux 2.4(heping) Misc. update:
* [svn-r10158] Purpose:James Laird2005-03-071-153/+250
| | | | | | | | | | | | | | | | | | | | | | Automake version upgrade Description: Upgraded automake version from 1.6.2 to 1.9.5. Changed bin/reconfigure script to use automake 1.9.5. Changed configure.in and Makefiles to use new FCFLAGS and FC variables instead of FFLAGS and F9X. Automake and configure should now do the lion's share of the work supporting Fortran 9X; macros in acsite.m4 are now mostly unused (will be cleaned later). Altered how configure handles pmake; now root-level Makefile.in is processed by bin/reconfigure to have a .MAKEFLAGS target, since automake no longer allows us to define unused variables. Configure now always checks for C++ compiler even if it is not used, since automake thinks this is the Right Thing To Do and will break otherwise. Platforms tested: Sol, copper, heping, mir, sleipnir, eirene, pommier, kelgia, modi4.
* [svn-r10125] Purpose:Albert Cheng2005-03-033-71/+98
| | | | | | | | | | | | | | | Feature--to provide a standalone mode for t_mpi.c so that it can be built outside of PHDF5 environment. Description: Move definitions that are common to all parallel test programs to a new header file called testpar.h. Leave only Parallel HDF5 tests related definitions in testphdf5.h. Platforms tested: heping (pp) and modi4(PP). Copper was down. Misc. update:
* [svn-r10123] Purpose:Albert Cheng2005-03-021-3/+0
| | | | | | | | | | | | | | | | | | | | | | | Removed GASS configuration and software packages associated with it. The following software are no longer configurable. checking for main in -lcrypto... yes checking for SSL_get_version in -lssl... yes checking globus_common.h usability... yes checking globus_common.h presence... yes checking for globus_common.h... yes checking for globus_module_activate in -lglobus_common... yes checking for main in -lglobus_gass_cache... yes checking for main in -lglobus_gaa... yes checking for main in -lglobus_gss... yes checking for main in -lglobus_gss_assist... yes checking for main in -lglobus_io... yes checking for main in -lglobus_gass_transfer_assist... yes checking for main in -lglobus_gass_transfer... yes checking for globus_gass_open in -lglobus_gass_file... yes Platforms tested: h5committested (but copper was down.) tested in modi4 too.
* [svn-r10122] Purpose:Albert Cheng2005-03-022-4/+5
| | | | | | | | | | | | | | | | typo fix and small improvement. Description: t_coll_chunk.c: ccdataset_vrfy() was using a wrong routine name to identify itself. testphdf5.c: Add a definition of NFILENAME to be the common dimension size of FILENAME[] and filenames[][] since they must have the same first dimension size. Platforms tested: h5committested.
* [svn-r10066] Purpose:James Laird2005-02-231-0/+4
| | | | | | | | | | Libtool upgrade Description: HDF5 was using libtool 1.4.2. Upgraded to libtool 1.5.14. Platforms tested: verbena, heping, pommier, copper, modi4, arabica
* [svn-r10027] Purpose:Xiaowen Wu2005-02-171-0/+1
| | | | | | | | | | | | | | New feature. Description: Add the scaleoffset internal library filter. Solution: Platforms tested: heping, copper, arabica Misc. update:
* [svn-r10016] James Laird2005-02-161-1/+0
| | | | | | | | | | | | | | | | | | | Purpose: Bug fix Description: modi4 dies during build with strange errors. The root cause of these is a two-year-old hack in HDF5's libtool script that only takes effect on IRIX. Solution: Edited the libtool hack (by editing ltmain.sh) to correct a bug in the hack. Also made sure that compiler-specific DEFAULT_LIBS are used when linking. Platforms tested: sleipnir, copper, modi4, sol
* [svn-r9993] Purpose:James Laird2005-02-112-2/+2
| | | | | | | | | | | | | | | | | | | | Bug fix Description: Arabica exhibited strange errors when linker found wrong versions of header files. This happened because include directories were given to linker in the wrong order. Solution: Move include directories from AM_CFLAGS variable to INCLUDES variable to put them before CPPFLAGS variable. Trust me, it works. This bug may also have contributed to strange errors on other platforms (kelgia?). Platforms tested: copper, sleipnir, arabica. (h5dump broke while building on arabica, but this happened in a clean checkout, too).
* [svn-r9988] Purpose:James Laird2005-02-111-15/+4
| | | | | | | | | | | | | | | | | | | | Bug fix Description: pmake (on modi4, for instance) complains about undefined variables if it is run without the -V flag, which turns those errors to warnings. Solution: Added test to configure.in to see if $MAKE will allow Makefiles with undefined variables. If not, sets -V flag in AM_MAKEFLAGS. Ensured that all custom make targets use AM_MAKEFLAGS. Also defined all variables that caused errors in top-level Makefile.am. This means that pmake can be used to build hdf5 *from the top level only*. To run make from a subdirectory, still need to use -V flag (or use make or gmake). Platforms tested: modi4, heping, copper, sleipnir
* [svn-r9930] James Laird2005-02-031-1/+1
| | | | | | | | | | | | | | | | | | Purpose: Bug fix Description: Parallel builds were breaking in tools/lib Solution: talign didn't realize it depended on libh5tools.la because its dependencies listed the full path (../../tools/lib/libh5tools.la). Changed this, and made similar changes in a couple of other directories. This checkin should also add the --foreign flag to every Makefile.in Platforms tested: sleipnir (minor change)
* [svn-r9928] Purpose:Quincey Koziol2005-02-031-1/+1
| | | | | | | | | | | | | New feature Description: Add basic code for new B-tree implementation. They don't do much yet, aren't hooked up to anything yet and the format may change, but I'd like to start getting them into the daily tests. Platforms tested: FreeBSD 4.11 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r9920] Purpose:James Laird2005-02-021-2/+3
| | | | | | | | | | | | | | | | | | | Bug fix Description: Found the permanant fix to automake/CVS dependency problem Solution: Added AM_MAINTAINER_MODE macro to configure.in. Now automake will never try to regenerate Makefiles, Makefiles.in, configure, H5config.h, etc. when they are out of date, nor will it print any warnings. Developers should be very very careful to use reconfigure script, and can add --enable-maintainer-mode flag to configure on heping to regenerate these files correctly. Platforms tested: heping sleipnir copper
* [svn-r9915] Purpose:James Laird2005-02-021-6/+6
| | | | | | | | | | | | | | | Bug fix Description: Configuration files' timestamps were incorrect. Solution: Update Makefiles.in. Also added correct paths to autotools on heping, so heping build should be able to re-generate configuration files even if they are still broken. Platforms tested: sleipnir
* [svn-r9912] Purpose:James Laird2005-02-011-87/+8
| | | | | | | | | | | | | | | | | Bug fix Description: Dependencies between configure files (aclocal, configure.in, configure, Makefiles.am and .in) are still causing Makefiles to try to run autotools during build. Solution: Committed all Makefiles.in to update their timestamps. As a temporary measure, forcibly prevented automake from running autotools during build by redefining the variables it uses. Platforms tested: sleipnir (No changes to Makefile content)
* [svn-r9907] Purpose:James Laird2005-02-011-0/+1
| | | | | | | | | | | | | Bug fix Description: Different compilers use different flags to include Fortran module files Solution: Changed boilerplate to use configure variable rather than hardcoded -M flag. Platforms tested: sleipnir, sol, copper
* [svn-r9902] Purpose:James Laird2005-02-013-480/+755
| | | | | | | | | | | | | | | Configuration feature Description: HDF5 now uses automake to generate Makefiles Solution: Makefile.in files are now generated from Makefile.am files. To reconfigure (after chaning a Makefile.am or configure.in): /bin/sh bin/reconfigure.sh Platforms tested: Many
* [svn-r9778] Purpose:Quincey Koziol2005-01-081-66/+22
| | | | | | | | | | | | | | | Remove feature Description: Retire threaded, balanced binary tree code from HDF5 use. Requiescat in pace... Also, regenerate dependencies files. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Too minor to require full h5committesting (the code is already disconnected from everything except its tests)
* [svn-r9727] Purpose:Quincey Koziol2004-12-299-170/+162
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-) Description: Generally speaking, this is the "signed->unsigned" change to selections. However, in the process of merging code back, things got stickier and stickier until I ended up doing a big "sync the two branches up" operation. So... I brought back all the "infrastructure" fixes from the development branch to the release branch (which I think were actually making some improvement in performance) as well as fixed several bugs which had been fixed in one branch, but not the other. I've also tagged the repository before making this checkin with the label "before_signed_unsigned_changes". Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel & fphdf5 FreeBSD 4.10 (sleipnir) w/threadsafe FreeBSD 4.10 (sleipnir) w/backward compatibility Solaris 2.7 (arabica) w/"purify options" Solaris 2.8 (sol) w/FORTRAN & C++ AIX 5.x (copper) w/parallel & FORTRAN IRIX64 6.5 (modi4) w/FORTRAN Linux 2.4 (heping) w/FORTRAN & C++ Misc. update:
* [svn-r9658] Purpose:MuQun Yang2004-12-131-3/+7
| | | | | | | | | | | | | | Check in testing code for irregular hyperslab selection with multiple chunks. Description: For debugging only, will not be tested by h5committest. Solution: Platforms tested: Linux 2.4 (mpich 1.2.6) Misc. update:
* [svn-r9649] Purpose:MuQun Yang2004-12-083-8/+191
| | | | | | | | | | | | | | Adding routines to test irrgular hyperslab selection inside one chunk. Description: For debugging purpose, tests are turned off now. Solution: Platforms tested: AIX 5.1 and Linux 2.4 with parallel enabled. Misc. update:
* [svn-r9575] Purpose:MuQun Yang2004-11-243-277/+642
| | | | | | | | | | | | | | | | Adding testing code for collective IO implementation Description: Won't affect testing HDF5 library. Not tested yet, only check in for debugging purpose. Solution: Platforms tested: Linux 2.4 + mpich 1.2.6 Aix 5.1 + mpcc_r Misc. update:
* [svn-r9530] Purpose:MuQun Yang2004-11-151-1/+1
| | | | | | | | | | | | | | | Modifying testing code for derived datatype. However, this test won't be run in the HDF5 parallel test. The code is checked in only for debugging purpose. Description: Solution: Platforms tested: Linux 2.4(mpich 1.2.6) Misc. update:
* [svn-r9521] Purpose:MuQun Yang2004-11-111-0/+308
| | | | | | | | | | | | | | | | | To test MPI derived datatype Description: A very simple irregular hyperslab selection in parallel. Will not be tested when testing HDF5 library. Check in only for debugging purpose. This code will be tested in the future. Solution: Platforms tested: AIX 5.1, Linux 2.4+mpich 1.2.6 Misc. update:
* [svn-r9520] Purpose:MuQun Yang2004-11-113-1/+22
| | | | | | | | | | | | | | | | | | Adding general MPI derived datatype testing code. Description: The testing code will not be tested. The purpose of checking in is for better debugging later. HDF5 routine or daily test should not be aware of this. Solution: Platforms tested: Copper(AIX 5.1), Heping(Linux 2.4 + MPICH 1.2.6). Misc. update:
* [svn-r9453] Purpose:Albert Cheng2004-10-221-1/+1
| | | | | | | | | | | | | Improvement. Description: Made all processes print hostname() by default so that it is easier to spot problems. Platforms tested: Tested in copper only. It is a trivial small change. Misc. update:
* [svn-r9358] Purpose:Quincey Koziol2004-10-047-35/+189
| | | | | | | | | | | | | | | Bug fix Description: Relax restrictions on parallel I/O to allow compressed, chunked datasets to be read in parallel (collective access will be degraded to independent access, but will retrieve the information still). Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Solaris 2.7 (arabica) IRIX64 6.5 (modi4) h5committest
* [svn-r9317] Purpose:Albert Cheng2004-09-241-49/+45
| | | | | | | | | | | | | | | | | | | | | | | | Code clean up Description: The tests used to have their own test file names due to the original program layout. Now that it is using the common test interface, individual test can be invoked at will (via -o). There is no need to have different test filenames. Only requirement is that certain read tests must follow immediately the corresponding write test since they use the same file. I have combined all test file names into just one common file name. This reduces the printout of test file name, very beneficial when the test is run by large number of processes. It makes future code maintenance easier too. Platforms tested: Tested in Eirene(PP) only. No h5committest because this is limited to the parallel tests and the changes are trivial. Misc. update:
* [svn-r9309] Purpose:Albert Cheng2004-09-222-21/+12
| | | | | | | | | | | | | | | Cleanup Description: Remove old hack for H5Eget_auto() which is not needed any more. Reverse H5E_set_auto_stack(H5EDEFAULT,...) back to previous code of H5E_set_auto(...). Same for H5E_get_auto_stack. Platforms tested: Only tested in Eirene PP as the change is pretty straight forward. Misc. update:
* [svn-r9274] Purpose:John Mainzer2004-09-183-2/+302
| | | | | | | | | | | | | | | | | | | | | | | | | Add test to verify the fix of the parallel I/O mode confusion bug. Description: While the parallel I/O mode confusion bug is fixed, an automated regression test for this bug would be useful. Solution: Added a modified version of the original bug demonstration program to testphdf5. Platforms tested: copper h5committested eirene (parallel) Misc. update:
* [svn-r9234] Purpose:Quincey Koziol2004-09-092-2/+2
| | | | | | | | | | | | | | | | | | | | | | | Code cleanup Description: Tweak recent "forward compatibility" changes to the H5E* API (which allowed for the old H5E API functions to remain unchanged) by allowing for the error stack callback function (H5E_auto_t) to also remain unchanged from the 1.6 branch. This required changing the H5E{get|set}_auto routines to have the old style H5E_auto_t type (which didn't have a stack ID parameter) and the new H5E{get|set}_auto_stack routines to have a newer "H5E_auto_stack_t" type (which has a stack ID parameter). This should make the H5E API changes as forwardly compatible as possible. One side-affect of this change was that it was impossible to determine if the current auto error callback was the old style (H5E_auto_t) or the new style (H5E_auto_stack_t) of callback, so a new API function (H5Eauto_is_stack) was adde to query this. Platforms tested: FreeBSD 4.10 (sleipnir) IRIX64 6.5 (modi4) h5committest
* [svn-r9200] MuQun Yang2004-09-031-10/+7
| | | | | | | | | | | | | | | | | | | Purpose: Shrink HDF5 parallel test Description: Previously the collective chunk IO tests created and opened four HDF5 files; it turned out that all collective chunk IO tests can use one file for testing. Solution: To use one file for all collective chunk IO tests with trunc option to be set in H5Fcreate. Platforms tested: copper(no need to use h5committest) Misc. update:
* [svn-r9183] Purpose: New featureRaymond Lu2004-09-011-12/+12
| | | | | | | | | | | | Description: Restore 6 old error API functions back to the library to be backward compatible with v1.6. They are H5Epush, H5Eprint, H5Ewalk, H5Eclear, H5Eset_auto, H5Eget_auto. These functions do not have error stack as parameter. Solution: Internally, these functions use default error stack. Platforms tested: h5committest and fuss. Misc. update: RELEASE.txt
* [svn-r9179] Purpose:Albert Cheng2004-09-011-24/+24
| | | | | | | | | | | | | Text display change Description: Changed the test names to much shorter strings for easier use. Platforms tested: No h5committed test. Only test parallel in eirene. Misc. update:
* [svn-r9149] Purpose:John Mainzer2004-08-241-90/+282
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Fix of bug/feature which caused testphdf5 to fail when run with more than 32 processes. This fix was originally applied to the 1.6 branch, and is now ported to the 1.7 branch. Description: 32 process limit was a hard coded constant. Solution: Modified most of the routines in t_mdset.c to adapt dynamically to the current number of processes. In passing, I also tidied up a few memory leaks. Note that one new routine had been added to the 1.7 version of t_mdset.c since the 1.6/1.7 split. I applied changes to this routine as well. Platforms tested: h5committested Tested on eirene with 4 and 8 processes. Couldn't go higher. I would have like to repeat my 32 - 64 process tests on copper, but was unable to do so as I don't have access to cu12t at present. Perhaps I will be able to manage this in the next few days. However, Albert wanted these changes checked in to the 1.7 branch so he could work with them. Misc. update:
* [svn-r9141] Purpose:Albert Cheng2004-08-242-72/+30
| | | | | | | | | | | Code cleanup. Removed bunch of old options (r,w,v,i,b,e) that are no longer valid or useful after adopting the general test interface. Moved the test of sizeof MPI_Offset into the test routine itself. Platforms tested: Eirene and Sol using pp mode.
* [svn-r9130] Purpose:Albert Cheng2004-08-202-32/+67
| | | | | | | | | | | | | | | | | | | | | bug fix. Description: The test routines only print error messages but not all of them return number of errors detected back to the main routine which always exit with a 0 status. Thus make or shell commands could not detect there were errors. Solution: Changed the test routines to return appropriate number of errors to main routine which in turn exit with the appropriate exit code if errors found. Platforms tested: Tested in Sol and eirene (pp). Misc. update:
* [svn-r9115] Purpose:Albert Cheng2004-08-192-15/+16
| | | | | | | | | | | | | | | | | | | | | | | | | feature Description: Another revamp of the test interface. TestInit: is used to register Test Program name, test program specific Usage and option parsing routines. TestUsage: will invoke extra usage routine if provided. TestParseCmdLine: will invoke extra option parsing routine if provided. GetTestSummary() and GetTestCleanup() replaces the previous Summary and CleanUp arguments of TestParseCmdLine. test/testhdf5, test/ttsafe.c, testpar/t_mpi.c, testpar/testphdf5.c: All have been updated to use the new Test Routines. testpar/t_mpi.c: Also a fix of a compiler optimization bug when pgcc in Linux is used to compile it. Changed buf[] and expected to unsigned char type to avoid a bug that failed to do sign-extension. Platforms tested: "h5committested" Also tested thread-safe option in eirene.
* [svn-r9104] MuQun Yang2004-08-171-13/+16
| | | | | | | | | | | | | | | | | | | | | | | | | Purpose: bug fix Description: 1. The IF-block of skipping collective chunk IO tests when the number of processes is greater than some number essentially skipped all parallel tests. 2. John tested at copper with the number of processor = 64 and collective chunk IO tests passed, so we increase the number of precessor =24 to 64 for skipping the test. Solution: 1. change the IF block flow so that it only skips collective chunk IO tests when the number of process is greater than 64. Platforms tested: copper(only change a bit of parallel test code, no needs to test on other platforms). Misc. update:
* [svn-r9081] Purpose:Albert Cheng2004-08-131-29/+26
| | | | | | | | | | Feature Description: Updated to use the new syntax of TestParseCmdLine(). Platforms tested: On eirene both serial and parallel.
* [svn-r9077] Purpose:MuQun Yang2004-08-131-2/+0
| | | | | | | | | | | | | | | Correction of the previous check. Description: forget moving "debug #if macro" out of this file. Solution: remove that "#if 0 #endif" macro block. Platforms tested: Compile at eirene Too trivial to test Misc. update:
* [svn-r9076] Purpose:MuQun Yang2004-08-131-1/+11
| | | | | | | | | | | | | | | | | | | | | | Better collective chunk IO test arrangements Description: collective chunk IO tests have been verified with the number of process greater than 24 and the test is very slow with big number of process. That may cause confusions to users who run collective chunk IO tests. Solution: To avoid possible confusions, A if-block will be used to check whether the number of process is greater than 24. If yes, the collective chunk tests will be skipped and a message will be printed out. Platforms tested: linux 2.4 (too trivial to use h5committest) Misc. update:
* [svn-r9071] Purpose:MuQun Yang2004-08-122-8/+21
| | | | | | | | | | | | | | | | Make collective chunk IO test more general Description: Previously collective chunk IO test is only fit for processor =4 with the dimension size to be set small; sometimes people would like to test with more than 4 processors(5,6 or more), the test therefore failed. Solution: To make the test case more general, dimensional size of the data is set to be large(right now 288 for each dimension), the disjoint hyperslab selection is re-calculated. Now the test cases should pass with 5,6 or 12 processors. Note, there is nothing wrong with the implementation of the library, it is the test case that causes the failure with the number of processor greater than 4. Platforms tested: Only at eirene, since only the test code is modified a little and it is very slow to test the parallel case. Misc. update:
* [svn-r9068] Purpose:Albert Cheng2004-08-111-114/+9
| | | | | | | | | | | | | | | | | | Cleanup and bug fix. Description: Bug fix: the checking of dobig test was done in the wrong place such that tests added after it would be run even for the -b option. Moved the dobig test checking to AFTER all tests are added. Cleanup: Removed old code now that the new way is working fine. Platforms tested: Tested in Eirene parallel only. Misc. update:
* [svn-r9050] Purpose:Albert Cheng2004-08-081-2/+4
| | | | | | | | | | | | | Feature Description: Added a feature such that if the test name starts with '-', do not run it by default. Platforms tested: Eirene both serial and parallel. Misc. update:
* [svn-r8987] Purpose:Quincey Koziol2004-08-022-1/+2
| | | | | | | | | | | | Code cleanup Description: Fix another batch of minor differences between the development and release branches. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r8983] Purpose:Quincey Koziol2004-08-021-308/+455
| | | | | | | | | | | | Update dependencies Description: Update dependencies after config/depend1.in bugfix Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel IRIX64 6.5 (modi4) h5committested
* [svn-r8932] Purpose:Quincey Koziol2004-07-223-84/+77
| | | | | | | | | | | | | | | | | | | | Code cleanup Description: Clean up collective chunking code a bit. Also, add '--enable-instrument' configure flag to have a mechanism for determining that optimized operations happened correctly in the library (instead of just the "normal" way) by allowing 'flag' properties to be set outside the library and set when the "right" thing happens. This is mainly for debugging and regression checks, so we make certain we don't break optimized I/O by accident. It's enabled by default when --enable-debug is on (which is on by default in the development branch and off by default in the release branch), but can also be independently controlled with its own configure flag. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel IBM p690 (copper) w/parallel
* [svn-r8924] Purpose:MuQun Yang2004-07-213-21/+59
| | | | | | | | | | | | | | To test collective chunk IO properly. Description: See the previous message. Solution: See the previous message. Platforms tested: arabica(Sol 2.7), eirene(Linux), copper(AIX) Misc. update:
* [svn-r8907] Purpose:MuQun Yang2004-07-204-3/+484
| | | | | | | | | | | | | | | | | | | | To add collective chunk IO tests. Description: three tests are added. 1. Only one hyperslab for each process, and this hyperslab is fit in exactly one chunk. 2. non-contiguous hyperslabs in each process, these hyperslabs are fit in one chunk. 3. Single hyperslab for each process, smaller chunk is assigned. Number of chunks for every process is equal. Solution: the dataset size is set to be very small, will enlarge later. Platforms tested: AIX 5.1(copper) Misc. update:
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