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* [svn-r13925] Purpose: intermediate checkin for offsetof fix for PGI compiler.Mike McGreevy2007-06-281-2/+3
| | | | | | | | | | Description: added new configuration to generate a pubconf file in the c++/src directory, H5cxx_pubconf.h. When C++ compiler recognizes 'offsetof', the macro H5_CXX_HAVE_OFFSETOF is defined in the new pubconf file. tested: kagiso, smirom
* [svn-r13846] Purpose: To remove changes from version #13839 (regarding ↵Mike McGreevy2007-06-081-1/+0
| | | | | | | | DEFAULT_VFD). Description: Changes made during this checkin need to be greatly modified, so I'm removing them now rather than leaving them in and fixing them later.
* [svn-r13839] Purpose: creation of a DEFAULT_VFD macro in the ↵Mike McGreevy2007-06-071-0/+1
| | | | | | | | | | | test/Makefile. Description: a new configure flag has been created that will now set a macro in the test/Makefile. The flag is with-default-vfd=. When set to a virtual file driver (e.g. "--with-default-vfd=sec2"), the macro DEFAULT_VFD will hold this value. Tested: kagiso, smirom, linew
* [svn-r13829] Some systems (only SGI Altix ProPack 4 discovered so far) ↵Raymond Lu2007-06-023-0/+55
| | | | | | | | | | | | doesn't return correct file size from MPI_File_get_size. Bypass this problem by replacing it with stat. Add an option --disable-mpi-size in configure to indicate this function doesn't work properly. Add a test in testpar/t_mpi.c, too. If it returns wrong file size, print out a warning. Tested on kagiso (parallel) because already tested the same change to v1.6 on several platforms (kagiso, cobalt, copper, and sol).
* [svn-r13815] Description:Quincey Koziol2007-05-291-0/+2
| | | | Regenerate configuration files after latest checkin
* [svn-r13801] Output improvement.Albert Cheng2007-05-231-45/+69
| | | | | | | | | | | | Added a header message showing the purpose and explanation that the test is for inoformation and always exits 0. Also added a summary at the end. Some other cosmetic changes (moved couple function code up, added some more printf, fflush statements.) Tested platform: kagiso.
* [svn-r13781] Add t_filter_read.c to testphdf5.Christian Chilan2007-05-221-2/+3
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* [svn-r13780] Add t_filter_read.c to testphdf5.Christian Chilan2007-05-221-1/+1
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* [svn-r13779] Add test_filter_read to testphdf5.Christian Chilan2007-05-221-0/+1
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* [svn-r13778] Add test_filter_read to testphdf5.Christian Chilan2007-05-221-0/+2
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* [svn-r13777] Test parallel read of dataset written serially with several ↵Christian Chilan2007-05-221-0/+465
| | | | (combination of) filters. Tested on copper and kagiso.
* [svn-r13766] In Visual Studio 2005 for 64-bit, _WIN32 is defined, but not ↵Scott Wegner2007-05-182-5/+5
| | | | | | | WIN32, so I've standardized all #ifdef's to use _WIN32. This should not affect any other platform. Tested: Visual Studio (32- and 64-bit) on Win XP
* [svn-r13650] Description:Quincey Koziol2007-04-121-4/+4
| | | | | | | | Clean up problems from error handling API changes in parallel and threadsafe builds. Tested on: FreeBSD/64 6.2 (liberty) w/parallel & threadsafe
* [svn-r13616] This check-in updates the bin/reconfigure file to point to the ↵Mike McGreevy2007-04-091-82/+69
| | | | | | | | most recent versions of the autotools. Updated autotool versions are: autoconf 2.61, automake 1.10.0, and libtool 1.5.22. Tested on kagiso.
* [svn-r13418] Cleaned up some old paths in config/commence.am and removed ↵James Laird2007-02-271-7/+7
| | | | | | | | some comments in the template file config/Makefile.am.blank. This is just a cleanup checkin. Tested on kagiso.
* [svn-r13379] Added 'make help' target. This actually runs a script, ↵James Laird2007-02-231-1/+4
| | | | | | | | bin/makehelp (formatting the output in the makefile was pretty hard). Tested that make still works on kagiso; no code changes at all.
* [svn-r13365] Bug fix.Albert Cheng2007-02-211-26/+0
| | | | | | | | | | | | Description: Multiple copies of Copyright appeared in Makefile.in. This was due to automake copying the copyright right in the included files such as config/commence.am. Solution: Automake treats double hashes as comments and does not copy them to Makefile.in. Changed all the copyright notices in config/*.am to use double hashes for the Copyright right notice. Tested: kagiso via bin/reconfigure.
* [svn-r13359] Fixed a bug where the -shlib flag for h5cc would end up on the ↵James Laird2007-02-201-5/+31
| | | | | | | | Dependency line in the Makefile. Makefile change only. Tested on kagiso, to be used to test on cobalt.
* [svn-r13264] Updated Makefile.am with new THG copyright notice.Albert Cheng2007-02-072-4/+6
| | | | Ran reconfigure to generate the Makefile.in files.
* [svn-r13261] Updated copyright notices.Albert Cheng2007-02-071-13/+14
| | | | Tested: visual inspection as they are all just comments.
* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-0715-30/+45
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
* [svn-r13181] Added a configure check to prevent a failure on Cygwin.James Laird2007-01-231-1/+1
| | | | | | | | | | | | | | It seems that while Cygwin supports the time command, it has trouble with the syntax srcdir="../../hdf5/test" time ./testhdf5 and complains. The solution is to test the above case in configure and not to use the time command if it fails; Cygwin is fine with srcdir="../../hdf5/test" ./testhdf5 Tested on Cygwin and kagiso. This feature shouldn't be a major compatibility problem since every platform but Cygwin is already fine with the current syntax.
* [svn-r12967] Cleanup.Albert Cheng2006-11-221-43/+0
| | | | | | | The h5_mpi_get_file_size() is no longer used. The unused code caused some compiling warning messages. Removed the whole routine. Tested in heping pp mode.
* [svn-r12966] Fixed an missing parameter in a printf call in io_mode_confusion.Albert Cheng2006-11-221-1/+1
| | | | Tested in heping pp.
* [svn-r12929] Hopefully this really is a fix for the tg-login errors.James Laird2006-11-161-3/+1
| | | | | | | | | | | The version of libtool used by HDF5 isn't directly affected by the reconfigure script; instead, libtoolize --force must be used by hand. Libtool was the source of the problem, so rolling its version back to 1.5.14 should solve the issue (at least temporarily). Reconfigure should still work on both heping and kagiso. Tested on heping, kagiso, and tg-login3.
* [svn-r12911] Backed up to previous versions of automake and libtool. ↵James Laird2006-11-141-1/+3
| | | | | | | | Hopefully this will fix issues on tg-login3. bin/reconfigure should still work on both heping/mir and kagiso.
* [svn-r12887] A fix for linking issues.James Laird2006-11-101-0/+1
| | | | | | | | | | | | Should disable linking against shared libraries in Fortran for compilers that don't support shared libraries. Should also fix problem when the wrong Fortran file extension was specified. If these changes don't solve the Daily Test issues, I'll look at backing out the autotool version change until I have time to fix them. Tested on heping, kagiso, juniper.
* [svn-r12882] Changed bin/reconfigure to work on kagiso as well as on AFS ↵James Laird2006-11-081-7/+9
| | | | | | | | Linux machines. Updated to the latest versions of autotools. Tested on kagiso, heping, and juniper. Let me know if you have any problems.
* [svn-r12844] Description:Quincey Koziol2006-11-021-77/+77
| | | | | | | Fix parallel build failure for property list class initialization refactor. Tested on: AIX (copper) w/parallel
* [svn-r12811] Purpose:Albert Cheng2006-10-251-10/+44
| | | | | | | | | | | | | | | | | | | Bug fix. Description: AIX complained if some files are still open when MPI_Finalize is called, so code called _exit without calling MPI_Finalize. But in Linux hosts with MPICH, the MPI processes terminated but the launch processes got stuck waiting for those processes to end properly and they would hang on forever. As more tests ran, more processes got stuck. Solution: In order to please both AIX and MPICH, the MPI file handles are retrieved and closed outside of the HDF5 library, then call MPI_Finalize and then _exit. Tested: in heping and copper.
* [svn-r12750] Purpose:Albert Cheng2006-10-121-3/+3
| | | | | | | | | | | Bug Fix (Bug 544) Description: SGI Altix's MPI_File_get_size overflowed at 2GB and more. Replaced h5_mpi_get_file_size calls by h5_get_file_size. Tested: Cobalt.
* [svn-r12741] Added support for direct I/O to check-vfd. The direct VFD is ↵James Laird2006-10-101-2/+2
| | | | | | | | | | only tested if it is enabled. Added Direct VFD status to the configure summary. Removed a line left over from pablo support. Oops!
* [svn-r12725] Purpose:Albert Cheng2006-10-061-0/+22
| | | | | | | | | | | | | Bug Fix (Bug 544) Description: SGI Altix's MPI_File_get_size overflowed at 2GB and more. Put in a temporary patch to use stat() instead to make Cobalt passing on this test (bigdset). A better fix (like detect if MPI_File_get_size does not work before using this is preferred.) Tested: Cobalt and Heping.
* [svn-r12717] Purpose: Bug FixLeon Arber2006-10-041-2/+3
| | | | | | | | | | Description: It seems that, on AIX, calling MPI_Finalize without closing all files results in an error. This causes t_pflush1 to fail because the whole point of the test is to see what happens if you don't close a file. Try getting rid of the call to MPI_Finalize to see if this will silence the error. Tested: AIX (copper)
* [svn-r12715] Incorporated a user-submitted patch to better detect the 'tr' ↵James Laird2006-10-031-0/+1
| | | | | | | | | | | | utility and quote its arguments. Also checks for the 'socket' library on Solaris. If this patch passes the Daily Tests and makes the user happy, I'll port it back to the 1.6 branch. Tested on mir and sol.
* [svn-r12704] Purpose: Bug fixLeon Arber2006-10-022-15/+28
| | | | | Description: Fix copper failures by adding MPI_Finalize call and also close the dataset and file in case of failure prior to exiting.
* [svn-r12697] Purpose: New FeatureLeon Arber2006-10-014-7/+402
| | | | | | | | Description: Preliminary test of H5Fflush to verify that it still works when using MPIO collective mode. Platforms: Linux (heping)
* [svn-r12668] Description:Quincey Koziol2006-09-151-1/+1
| | | | | | | Re-run 'bin/reconfigure' script after recent checkins Tested on: none - shouldn't have any affect on compilation
* [svn-r12640] Frank Baker2006-09-041-0/+16
| | | | | | | | Description: Add per-directory abbreviated copyright notices (abbreviated COPYING files pointing to full notices). Tested: MANIFEST verified; not otherwise tested.
* [svn-r12608] Checked in External Link C examples.James Laird2006-08-221-1/+1
| | | | | | | | Since these examples need to follow filesystem paths, the Makefiles need to create directories in the examples directory; added this to the Makefile.am. Tested on Windows, mir, juniper
* [svn-r12594] Added small parallel test for modification of ↵John Mainzer2006-08-171-15/+55
| | | | | | | | H5C_insert_entry() allowing insertion and pinning of a cache entry in one call. h5commit tested
* [svn-r12584] Mentioned VFD in test output to make it easier to tell which ↵James Laird2006-08-171-7/+6
| | | | | | | | | VFD is being used when a test is run. Running reconfigure also regenerated error header files (because someone edited them manually?).
* [svn-r12554] New tests have been added to test the correctness of ↵MuQun Yang2006-08-096-87/+206
| | | | | | | | independent IO with file setview. To activite this test, add the command option -i. For example, at IBM AIX, type "poe testphdf5 -i" will test the library with independent IO with file setview. It simply replaces all the collective IO tests with independent IO with file setview.
* [svn-r12519] Fixed "make check-vfd"James Laird2006-07-311-2/+3
| | | | | | | | | | "make check-vfd" will now run all tests in the test directory with different file drivers (at least, all of those tests that use the testing framework's FAPL). Tests that fail will be skipped. This is not a perfect fix, but is better than nothing. Along with this change, check-vfd should be added to the Daily Tests.
* [svn-r12462] Committed a variety of metadata cache related changes:John Mainzer2006-07-131-23/+738
| | | | | | | | | | | | | | | | | | | | | | 1) Added trace file support to the metadata cache. This allows capture of all metadata cache calls in trace files for purposes of optimization and debuging. 2) Added an expunge entry function. This allows an entry to be deleteded from the cache without writing it to disk even if it is dirty. 3) Added a function call to resize pinned entries. 4) Added code to deal with entries that are dirty on load. This is needed in support of a bug fix which can alter object headers on load to repair files. 5) Added progress reporting code to the "MDC API smoke check" test in cache_api.c. To enable the progress reporting, set report_progress to TRUE in mdc_api_call_smoke_check(). Tested with h5committest, and a parallel test on phoenix (dual athelon linux box).
* [svn-r12440] Purpose:Quincey Koziol2006-06-277-432/+432
| | | | | | | | | | | Code cleanup Description: Trim trailing whitespace in Makefile.am and C/C++ source files to make diffing changes easier. Platforms tested: None necessary, whitespace only change
* [svn-r12431] Purpose:James Laird2006-06-212-17/+7
| | | | | | | | | | | | | | Configuration feature Description: 'make install' now tests both static and shared libraries if both are installed. Solution: Previously, shared libraries were only tested when static libraries were not installed. Also cleaned up line in commence.am that was including HL library in all Makefiles. Platforms tested: mir (Makefile change only)
* [svn-r12411] Purpose:James Laird2006-06-131-0/+1
| | | | | | | | | | | | | | Bug fix - bugzilla #552 Description: On Cray X1, trying to use : as an argument confused the system. Solution: Added a test in configure to see if : as an argument is bad. If so, skipped the test. Platforms tested: mir, Cray X1 (change to configure only)
* [svn-r12407] Purpose:Albert Cheng2006-06-061-3/+3
| | | | | | | | | | slight cleanup. Description: Changed the name of write type from write to write_pattern. Platforms tested: h5committested.
* [svn-r12405] Purpose:Albert Cheng2006-06-061-86/+38
| | | | | | | | | | | | | | Bug fix. Description: It failed when only 1 is used to test. Solution: Cleanup the code a little so that it works for any number of processes to invoke it. Platforms tested: h5committested,
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