| Commit message (Collapse) | Author | Age | Files | Lines |
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Removed from configure.ac VPATH section, LONE_COLON check and checks for redundant addition of /usr/include and /usr/lib to compile flags, with reconfigure.
Tested h5committest
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Plugin test for disable state does not print error stack and does not print FAILED
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Run reconfigure after merges from autotools_rework branch
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Removed the configure option that allows selective disabling of individual
internal filters (fletcher32, shuffle, etc.).
This feature mucked up the code with a lot of #ifdefs, saved very little
space and was not scalable to a general scheme for library size reduction.
We've decided to remove the feature while we investigate a more general
scheme for decreasing the library size.
Fixes: HDFFV-9086
Tested on: h5committest
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Update windows wix cpack process.
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r26188 r26280
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remove files with .clog2 extension generated by MPE when doing make clean
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configure fixes for HDFFV-9068,9069,9096,9097,9135 from autotools_rework branch:
- Remove Infering parallel compilers (C and Fortran) from configure.ac
- Remove restriction to build shared with parallel
- Cleanup parallel sections in configure.ac
- remove large file support checks
- MPE fixes.
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Merge changes that correspond to the 64-bit ID changes (without the actual
switch to 64-bit IDs) to the 1.8 release branch. (Plus a few minor cleanups
and alignments with the trunk that aren't on the branch)
Tested on:
Mac OSX/64 10.9.4 (amazon) w/C++ & FORTRAN
(h5committested on branch already for a week)
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- remove configure checks for MPI_File_get_size and Big MPI_File_set_size as they are supported by MPIO implementations today.
- fix bug in t_mpi.c (HDFFV-8856)
tested with h5committest.
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back fix for removing rpaths from lib files. The fix also removed dependencies on libhdf5, etc. when the --disable-sharedlib-rpath configure option was invoked.
Added instead configure variable hardcode_into_lib=no. This removes rpath from lib files on Linux and solaris machines.
Tested with h5committest on jam, koala, ostrich and platypus (cmake), and on emu and kite.
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Tested: h5committest
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Tested: local linux
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Bring r24864 from trunk to 1.8 branch:
Remove all traces of MPI-POSIX VFD and GPFS detection/code.
Remove remaining traces of stream VFD.
Remove testpar/t_posix_compliant test (it's not actually verifying anything).
Clean up H5D__mpio_opt_possible() further.
Moved environment variable that disables MPI collective operations into
MPI-IO VFD (instead of it being in src/H5S.c).
A few other small code cleanups.
Tested on:
Mac OSX/64 10.9.2 (amazon) w/parallel & serial
(daily tested on trunk)
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LT_ADD_LIBHDF5_DEPENDENCY is used in Makefiles but the declaration in configure.ac is missing.
Copied declaration from trunk. Tested with h5committest on jam ostrich koala and platypus(cmake).
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cleaned. CMake update to clean testfiles.
Tested: local cmake, autotools
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Also add default switch blocks to h5import.
Merge h5dump any_path option from trunk.
Tested: local linux
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Bring r24020 from trunk to 1.8 branch:
Clean up compiler warnings
Tested on:
Mac OSX/64 10.8.4 (amazon) w/C++ & FORTRAN
(too minor to require h5committest)
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Tested: local linux
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Tested: local linux
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Bring r23395 from trunk to 1.8 branch:
Bring Coverity changes from branch to trunk:
r20682:
fixed coverity:
76, 77, 635, 636, 1164, 1165, 1166, 1121, 1122, 1117, 1343
Tested on:
Mac OSX/64 10.8.3 (amazon) w/C++ & FORTRAN
(too minor to require h5committest)
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Tested: local linux
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This was prompted by HDFFV-8227, OS X requires latest version of cmake for proper support.
Tested: local linux
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Bring r22921 from trunk to 1.8 branch:
Review Coverity changes and bring them back to trunk. (QK & JK)
r20402:
Added #includes for h5tools.y or h5tools_utils.h as required to remedy implicit
function declarations which caused compiler warnings and coverity issues 703-4
and 708-11.
r20414:
This is related to the previous checkin r20399. There were incorrect updates
which caused incorrect behavior when no file was given. Also possible segfault
when handling hyperslab options. Simplify the code changes.
r20449:
Description: Modified H5E_walk2_cb to check return value of H5I_object_verify.
r20450:
fixed coverity 813
Tested on:
Mac OSX/64 10.8.2 (amazon) w/C++, FORTRAN, debug & threadsafe
(too minor to require h5committest)
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Convert configure.in to configure.ac.
Align TESTS usage with autotools convention.
Update all references from configure.in to configure.ac
Tested: h5committest
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Tested: windows
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libtool 2.4.2
Tested THG machines.
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HDFFV-8107 testh5diff will fail if build/test in HDF5 source tree
Description:
This is sub-task for "HDFFV-8105 testh5diff.sh uses the wrong operator (-a) in an if statement."
From the HDFFV-8105's update, h5diff test failed if build&test is performed in HDF5 source tree because 'cp' try to copy test files to self dir.
It's addressed by skipping if cp's src dir and dest dir is same.
Also this applied for all other tools under src/tools dir.
No change to the CMakeLists.txt files because CMake cautions/demands that in-source builds be avoided.
Merged from HDF5 trunk r22617.
Tested:
jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), some manual tests as well
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Tested jam, local linux
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(2) fix to extend into the aggregator based on threshold
(3) fix for the "flavor" logging problem
(4) fix for test failures due to the above fixes
(5) bug fix for h5stat when h5stat against a non-existing file
--Ths line, and th se below, will be ignored--
M test/mf.c
M src/H5MFaggr.c
M src/H5FDpublic.h
M src/H5MF.c
M src/H5FDmulti.c
M src/H5FDlog.c
M src/H5Faccum.c
M tools/h5copy/testfiles/h5copytst.out.ls
M tools/h5copy/testfiles/h5copy_ref.out.ls
M tools/h5stat/testh5stat.sh.in
M tools/h5stat/h5stat.c
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If a link is specified on the command with the -d option, call the handle_links function on error from the H5Dopen command.
Updated test file results with error stack when link not found.
Tested: trunk
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Merge 1.8 and h5dump/tools and tests based on tools library from trunk.
Reduced warnings.
HDFFV-7949:
Remove duplicated functions in h5ls
Tested: local linux,h5committest
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Bring r21932 & r21934 from trunk to 1.8 branch:
r21932:
Correct misnamed FUNC_ENTER macro.
r21934:
Remove some leftover uses of the __FUNCTION__ macro, replacing them with
FUNC macro, as used everywhere else.
Tested on:
Mac OSX/64 10.7.3 (amazon) w/debug & production
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HDFFV-7602 - GMQS: HDF5 command tools: Provide framework for reusable test files among tools
Stage2 working for h5copy tool.
Description:
Update cmake script to fetch test files from anywhere.
Also keep the apperance similiar to shell script for better maintainance.
some updated shell script.
Merged from HDF5 trunk r21874
Tested:
jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), Cmake (jam)
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standard 2.8.6
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Update cmake to generate source folders in VS
Brought parallel changes from trunk
Tested: local linux
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Purpose: Update fix committed in r21556
Description:
An old patch was mistakenly committed in r21556. Replaced this fix with the
latest.
Tested: jam, koala, heiwa (h5committest)
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branch, used:
svn merge -r 20506:21414 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran
Tested: jam (gnu, intel, pgi compilers)
Also merged effected non-Fortran files:
svn merge -r21247:r21248 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/src/libhdf5.settings.in
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Work for HDFFV-7602 - HDF5 command tools: Provide framework for reusable
test files among tools
Description:
Merged from HDF5 trunk r21057
Provide framework to share test files among tools for tools test.
Tested:
jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE)
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Fix HDFFV-7592
"Remove PACKEDBITS option from autotools files"
Description:
The code for h5dump's packed bits feature was
conditionally compiled in via this option during its
'beta' release in 1.8.5. Now that the feature is fully
supported, h5dump has since been changed to always
compile the packed bits code (having removed the #ifdef
H5_HAVE_H5DUMP_PACKED_BITS checks), so this option in
configure is no longer needed.
This commit removes the --enable-h5dump-packed-bits
configure option, including the help summary from
'./configure --help' and the libhdf5.settings output
summary, the PACKED_BITS Makefile variable, and the
definition of H5_HAVE_H5DUMP_PACKED_BITS define in
appropriate pubconf header files (which has already
been removed from use in source code as of r20722).
Note that this option was never added to the trunk,
thus this commit only need occur on the 1.8 branch.
Tested:
- Configure output, help, & summary verified on jam
- h5committested
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Test scripts sometimes need to filter some system-specific messages from the
actual output so that it can match the correct expected output. These filtering
functions, ususally called "STDOUT_FILTER()" and "STDERR_FILTER()" were being
repeated in individual test scripts. This becomes a maintenance problem and
is error prone.
Solution:
Extract the two filter functions code to bin/output_filter.sh and then each
test script sources it in. This allows reuse of coding and is much easier to
maintain and to add new filtering.
Tested:
LLNL Zeus (linux64 cluster) and Dawndev (Blue-Gene cluster), both for serial
mode only.
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