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* [svn-r15988] Merge with 1.8 up to rev 15871Pedro Vicente Nunes2008-10-291-5/+68
| | | | | | Regarding h5diff, h5copy Tested: linux
* [svn-r15942] Purpose: Bug Fixes and Libtool UpgradeMike McGreevy2008-10-241-6/+6
| | | | | | | | | | | | | | | | | | Description: - Remove need to set LD_LIBRARY_PATH when using shared szip library. - Libtool 2.2.6a is now used to generate libraries. - 'make check install' dependency bug is fixed, and should no longer break the build. - removed hard coding of shell in config/commence.am, as this causes problems on Solaris with the new version of libtool. - RELEASE.txt with appropriate changes. Tested: - kagiso, smirom, linew (merged from 1.8, pretty quick tests)
* [svn-r15628] Description:Quincey Koziol2008-09-162-23/+23
| | | | | | | | | | | | | Remove trailing whitespace from C/C++ source files, with the following script: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Tested on: Mac OS X/32 10.5.5 (amazon) No need for h5committest, just whitespace changes...
* [svn-r15439] Add the following patch Peter Cao2008-08-061-1/+1
| | | | | | | | | | | | | | | | === The following patch to h5copy.c on or near line 173 makes the tool substantially more useful... *flag = (*flag) | fla; Because the command-line option parsing permits multiple '-f' arguments, this will have the effect of or'ing the flags together so one can do someting like.... ~/tmp/hdf5-1.8.1/tools/h5copy/h5copy -i multi_ucd3d.h5 -s block5 -o gorfo -d foo -f shallow -f soft Mark C. Miller, Lawrence Livermore National Laboratory email: mailto:miller86@llnl.gov ===
* [svn-r15251] Moved all h5copy testfiles from /tools/testfiles to ↵Pedro Vicente Nunes2008-06-203-1/+433
| | | | | | tools/h5copy/testfiles tested: linux
* [svn-r15036] Bug fix.Albert Cheng2008-05-191-4/+4
| | | | | | | | | | | | | | | | | | | Description: The fortran Makefile.am used HDF_FORTRAN to indicate it is part of the Fortran API source so that conclude.am will give fortran api prefix in the test output. The symbox HDF_FORTRAN is also used in configure for a different purpose (indicated --enable-fortran). They conflicted. Similar problem for the symbol HDF_CXX. Solution: Changed all the involved Makefile.am to use "FORTRAN_API" instead. It is a more appropriate name. Same for CXX_API. Along the way, discovered that the Makefile.am of hl/fortran/test and hl/cxx/test did not have those symbols at all. Added them in. Platform tested: Kagiso only. It is a trivia change.
* [svn-r15007] Purpose: configure cleanupMike McGreevy2008-05-151-1/+0
| | | | | | | Description: cleaning up configure related to removal of --disable-hsizet flag, which we no longer support. Tested: kagiso
* [svn-r15003] Purpose:Albert Cheng2008-05-151-0/+15
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Improvement. Description: src/libhdf5.settings was the initial configure summary and is installed. Then configure is changed to dump a summary of the configure settings to the output and also append it to src/libhdf5.settings. That created two different output formats and duplicated information. This is the initial attempt to clean up this confusion and unify the output format. It is decided to use the src/libhdf5.settings template as the unified means. This requires more macros symbols be defined. The following symbols are all related to generating the src/libhdf5.settings file. AC_SUBST(EXTERNAL_FILTERS) AC_SUBST(MPE) MPE=no AC_SUBST(STATIC_EXEC) STATIC_EXEC=no AC_SUBST(HDF_FORTRAN) HDF_FORTRAN=no AC_SUBST(FC) HDF_FORTRAN=no AC_SUBST(HDF_CXX) HDF_CXX=no AC_SUBST(CXX) HDF_CXX=no AC_SUBST(HDF5_HL) HDF5_HL=yes AC_SUBST(GPFS) GPFS=no AC_SUBST(LINUX_LFS) LINUX_LFS=no AC_SUBST(INSTRUMENT) INSTRUMENT=no AC_SUBST(CODESTACK) CODESTACK=no AC_SUBST(HAVE_DMALLOC) HAVE_DMALLOC=no AC_SUBST(DIRECT_VFD) DIRECT_VFD=no AC_SUBST(THREADSAFE) THREADSAFE=no AC_SUBST(STATIC_SHARED) AC_SUBST(enable_shared) AC_SUBST(enable_static) AC_SUBST(UNAME_INFO) UNAME_INFO=`uname -a` The src/libhdf5.settings.in has CONDITIONAL's added to it too. The untrue conditions turned into a "#" and these lines are cleaned by the post processing script. Platform tested: h5committest on kagiso, smirom and linew.
* [svn-r14933] Purpose: Updating HDF5 to use automake 1.10.1 and libtool 2.2.2Mike McGreevy2008-05-051-16/+20
| | | | | | | | | | | | | | | | | | Description: Applying update to autotools that was applied to 1.8 a couple of weeks ago to the trunk. Updated bin/reconfigure script to reflect the new versions of libtool and automake in the /home1/packages/ directory. Rearranged configure.in script. When using libtool 2.2.2, the libtool script doesn't generate until later in the configuration process, so I had to move a test that parsed through the libtool script to a point after where it was actually being generated. Ran libtoolize on the project, and ran bin/reconfigure to regenerate configure and Makefile.in's throughout. Tested: kagiso, smirom, linew (h5committest)
* [svn-r14402] Description:Quincey Koziol2008-01-131-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Add work-around to allow reading files that were produced with a buggy earlier version of the library, which could create objects with the wrong object header message count. There is now a configure flag "--enable-strict-format-checks" which triggers a failure on reading a file with this sort of corruption (when enabled) and allows the object to be read (when disabled). The default value for the "strict-format-checks" flag is yes when the "debug" flag is enabled and no when the "debug" flag is disabled. Note that if strict format checks are disabled (allowing objects with this particular kind of corruption to be read) and the file is opened with write access, the library will re-write the object header for the corrupt object with the correct # of object header messages. This closes bugzilla bug #1010. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r14284] Description:Quincey Koziol2007-11-241-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Add H5Lvisit_by_name() API routine to library. Eliminated all (five!) other group traversal routines and changed them all to use the new API routine. Cleaned up output of h5ls & h5stat: - Issue error when requesting recursive traversal of a file with the "group info" flag, but no group given - Print info about root group in all(?) appropriate situations - Don't print "verbose" information about root group until the root group is in the list of objects to display (mostly because h5ls & h5stat had a different twist on traversing the groups in a file that the other utilities) Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r14261] bug fix: new syntax for the h5diff call in the h5dopy shell scriptPedro Vicente Nunes2007-11-141-2/+2
| | | | tested: linux
* [svn-r14199] Description:Quincey Koziol2007-10-111-7/+7
| | | | | | | | | | | | | | | | | | | | | Add H5Dcreate to API versioned routines, replacing internal usage with H5Dcreate2 Fix thread-safe error stack initialization for API versioned error stack printing routines. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14156] Description:Quincey Koziol2007-09-261-1/+1
| | | | | | | | | | | | | | | | Add API versioning to H5Tcommit() Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode AIX/32 5.3 (copper) w/FORTRAN, w/parallel, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14104] Description:Quincey Koziol2007-08-231-3/+3
| | | | | | | | | | | | | Pursue calls to H5Gcreate() relentlessly and ruthlessly exterminate them, leaving only a few tame specimens in text files and comments. ;-) Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) Solaris/32 5.10 (linew)
* [svn-r13972] Description:Quincey Koziol2007-07-131-0/+1
| | | | | | | | | Add --with-default-api-version configure flag. Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty) Linux/32 2.6 (kagiso)
* [svn-r13971] Description:Quincey Koziol2007-07-121-0/+1
| | | | | | | | | | | | | | Add --enable-deprecated-symbols configure option, to allow users to remove deprecated public API symbols at configure time. Add bin/make_vers script to bin/reconfigure actions. Run bin/reconfigure to regenerate autotool components. Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty) Linux/32 2.6 (kagiso)
* [svn-r13928] Purpose: 1) Moving H5_CXX_HAVE_OFFSETOF macro to ↵Mike McGreevy2007-06-291-3/+2
| | | | | | | | | | src/H5pubconf.h file. 2) Removing configuration of c++/src/H5cxx_pubconf.h file. Reasoning: the additional pubconf file caused compilation complications, this is cleaner. Tested: kagiso, smirom
* [svn-r13925] Purpose: intermediate checkin for offsetof fix for PGI compiler.Mike McGreevy2007-06-281-2/+6
| | | | | | | | | | Description: added new configuration to generate a pubconf file in the c++/src directory, H5cxx_pubconf.h. When C++ compiler recognizes 'offsetof', the macro H5_CXX_HAVE_OFFSETOF is defined in the new pubconf file. tested: kagiso, smirom
* [svn-r13914] Description:Quincey Koziol2007-06-263-1/+15
| | | | | | | Clean up files generated during testing. Tested on: Linux/32 2.6 (chicago)
* [svn-r13846] Purpose: To remove changes from version #13839 (regarding ↵Mike McGreevy2007-06-081-1/+0
| | | | | | | | DEFAULT_VFD). Description: Changes made during this checkin need to be greatly modified, so I'm removing them now rather than leaving them in and fixing them later.
* [svn-r13839] Purpose: creation of a DEFAULT_VFD macro in the ↵Mike McGreevy2007-06-071-0/+1
| | | | | | | | | | | test/Makefile. Description: a new configure flag has been created that will now set a macro in the test/Makefile. The flag is with-default-vfd=. When set to a virtual file driver (e.g. "--with-default-vfd=sec2"), the macro DEFAULT_VFD will hold this value. Tested: kagiso, smirom, linew
* [svn-r13829] Some systems (only SGI Altix ProPack 4 discovered so far) ↵Raymond Lu2007-06-021-0/+1
| | | | | | | | | | | | doesn't return correct file size from MPI_File_get_size. Bypass this problem by replacing it with stat. Add an option --disable-mpi-size in configure to indicate this function doesn't work properly. Add a test in testpar/t_mpi.c, too. If it returns wrong file size, print out a warning. Tested on kagiso (parallel) because already tested the same change to v1.6 on several platforms (kagiso, cobalt, copper, and sol).
* [svn-r13815] Description:Quincey Koziol2007-05-291-0/+2
| | | | Regenerate configuration files after latest checkin
* [svn-r13616] This check-in updates the bin/reconfigure file to point to the ↵Mike McGreevy2007-04-091-76/+62
| | | | | | | | most recent versions of the autotools. Updated autotool versions are: autoconf 2.61, automake 1.10.0, and libtool 1.5.22. Tested on kagiso.
* [svn-r13418] Cleaned up some old paths in config/commence.am and removed ↵James Laird2007-02-271-7/+7
| | | | | | | | some comments in the template file config/Makefile.am.blank. This is just a cleanup checkin. Tested on kagiso.
* [svn-r13379] Added 'make help' target. This actually runs a script, ↵James Laird2007-02-231-1/+4
| | | | | | | | bin/makehelp (formatting the output in the makefile was pretty hard). Tested that make still works on kagiso; no code changes at all.
* [svn-r13365] Bug fix.Albert Cheng2007-02-211-26/+0
| | | | | | | | | | | | Description: Multiple copies of Copyright appeared in Makefile.in. This was due to automake copying the copyright right in the included files such as config/commence.am. Solution: Automake treats double hashes as comments and does not copy them to Makefile.in. Changed all the copyright notices in config/*.am to use double hashes for the Copyright right notice. Tested: kagiso via bin/reconfigure.
* [svn-r13359] Fixed a bug where the -shlib flag for h5cc would end up on the ↵James Laird2007-02-201-5/+31
| | | | | | | | Dependency line in the Makefile. Makefile change only. Tested on kagiso, to be used to test on cobalt.
* [svn-r13306] Description:Quincey Koziol2007-02-141-1/+4
| | | | | | | | | | | Mask off the storage utilization for the h5ls output, so that the h5ls output is more portable (VL datatype size is reported as the memory size instead of the file size, making the storage utilization incorrect - entered in bugzilla) Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13303] Description:Quincey Koziol2007-02-141-1/+1
| | | | | | | | | Blank out the modification time, to eliminate another portability issue. Tested on: Linux/32 2.6 (chicago) FreeBSD/32 6.2 (duty) Mac OS X/32 10.4.8 (amazon)
* [svn-r13302] Description:Quincey Koziol2007-02-141-1/+1
| | | | | | | | Use the '-S' command line flag for h5ls, to make the output portable. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13301] Description:Quincey Koziol2007-02-143-95/+154
| | | | | | | | | | | Add '-p' flag to h5copy tool, to create intermediate "parent" groups that don't exist in destination file yet. Add more tests to h5copy script. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13299] Description:Quincey Koziol2007-02-142-10/+18
| | | | | | | | | | | | Put paths to testfile input & output directories in one place, making it easier to modify them if we choose to re-arrange our testfile locations in the future (this should probably be carried over to other test scripts). Make h5copy exit more cleanly if no command line parameters are given. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13297] Description:Quincey Koziol2007-02-142-9/+8
| | | | | | | | | | | | | | | | Add small 'h5mkgrp' tool to create groups in an HDF5 file from the command line, allowing the group structure for a file to be created in a script. This tool closely follows the 'mkdir' command line tool in UNIX/Linux. Allow tool library applications to pass a FAPL to the h5tool_fopen() call, giving some additional flexibility to tools which are adding objects to an existing HDF5 file (like h5copy & h5mkgrp). Fix missing files in MANIFEST from previous checkin(s). Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13294] Description:Quincey Koziol2007-02-132-24/+93
| | | | | | | | | | | | Add empty & "full" groups to source HDF5 file and test copying them. Test renaming objects during copy Test specifying root group path for source & destination objects Tested on: Linux/32 2.6 (chicago) Too minor to require more tests
* [svn-r13293] Description:Quincey Koziol2007-02-131-18/+35
| | | | | | | | | | | Refactor h5copy testing script to abstract out some of the common behavior, obey the "HDF5_NOCLEANUP" environment variable, delete any output file left over from a previous run, add a "test variation" parameter to output file name for adding next sequence of test variations, etc. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13292] Description:Quincey Koziol2007-02-133-232/+289
| | | | | | | | | | | | | | | Add feature to h5copy to allow it to add an object to an existing file, instead of blowing away existing file. Modify h5tools_fopen() routine to take access flags, so it can be used to open an existing file for writing. Added check to h5copy test script that verifies it has produced a file with the correct structure. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13264] Updated Makefile.am with new THG copyright notice.Albert Cheng2007-02-072-4/+6
| | | | Ran reconfigure to generate the Makefile.in files.
* [svn-r13261] Updated copyright notices.Albert Cheng2007-02-071-2/+3
| | | | Tested: visual inspection as they are all just comments.
* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-072-4/+6
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
* [svn-r13181] Added a configure check to prevent a failure on Cygwin.James Laird2007-01-231-1/+1
| | | | | | | | | | | | | | It seems that while Cygwin supports the time command, it has trouble with the syntax srcdir="../../hdf5/test" time ./testhdf5 and complains. The solution is to test the above case in configure and not to use the time command if it fails; Cygwin is fine with srcdir="../../hdf5/test" ./testhdf5 Tested on Cygwin and kagiso. This feature shouldn't be a major compatibility problem since every platform but Cygwin is already fine with the current syntax.
* [svn-r13164] Add nullmsg flag for testing onlyPeter Cao2007-01-221-0/+4
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* [svn-r13160] Fixed help information to use stdout instead of stderr.Peter Cao2007-01-191-5/+2
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* [svn-r12929] Hopefully this really is a fix for the tg-login errors.James Laird2006-11-161-3/+1
| | | | | | | | | | | The version of libtool used by HDF5 isn't directly affected by the reconfigure script; instead, libtoolize --force must be used by hand. Libtool was the source of the problem, so rolling its version back to 1.5.14 should solve the issue (at least temporarily). Reconfigure should still work on both heping and kagiso. Tested on heping, kagiso, and tg-login3.
* [svn-r12911] Backed up to previous versions of automake and libtool. ↵James Laird2006-11-141-1/+3
| | | | | | | | Hopefully this will fix issues on tg-login3. bin/reconfigure should still work on both heping/mir and kagiso.
* [svn-r12887] A fix for linking issues.James Laird2006-11-101-0/+1
| | | | | | | | | | | | Should disable linking against shared libraries in Fortran for compilers that don't support shared libraries. Should also fix problem when the wrong Fortran file extension was specified. If these changes don't solve the Daily Test issues, I'll look at backing out the autotool version change until I have time to fix them. Tested on heping, kagiso, juniper.
* [svn-r12882] Changed bin/reconfigure to work on kagiso as well as on AFS ↵James Laird2006-11-081-7/+9
| | | | | | | | Linux machines. Updated to the latest versions of autotools. Tested on kagiso, heping, and juniper. Let me know if you have any problems.
* [svn-r12869] Description:Quincey Koziol2006-11-061-18/+18
| | | | | | | | Rename new H5Gcopy() routine to H5Ocopy() as discussed in last Friday's design discussion. Tested on: Linux/32 2.6 (chicago)
* [svn-r12772] Pedro Vicente Nunes2006-10-172-24/+173
| | | | added more tests for h5copy (compressed datasets, vl named datatypes )
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