| Commit message (Collapse) | Author | Age | Files | Lines |
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Pursue calls to H5Gcreate() relentlessly and ruthlessly exterminate
them, leaving only a few tame specimens in text files and comments. ;-)
Tested on:
Mac OS X/32 10.4.10 (amazon)
FreeBSD/32 6.2 (duty)
FreeBSD/64 6.2 (liberty)
Linux/32 2.6 (kagiso)
Linux/64 2.6 (smirom)
Solaris/32 5.10 (linew)
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Make the compare to itself file test be another due to the recently introduced file with Nans
Tested: linux, solaris
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Added a dataset with NaN values to the h5diff file generator program and new binary file
Tested: linux
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Add --with-default-api-version configure flag.
Tested on:
Mac OS X/32 10.4.10 (amazon)
FreeBSD/32 6.2 (duty)
Linux/32 2.6 (kagiso)
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Add --enable-deprecated-symbols configure option, to allow users to
remove deprecated public API symbols at configure time.
Add bin/make_vers script to bin/reconfigure actions.
Run bin/reconfigure to regenerate autotool components.
Tested on:
Mac OS X/32 10.4.10 (amazon)
FreeBSD/32 6.2 (duty)
Linux/32 2.6 (kagiso)
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src/H5pubconf.h file.
2) Removing configuration of c++/src/H5cxx_pubconf.h file.
Reasoning: the additional pubconf file caused compilation complications, this is cleaner.
Tested: kagiso, smirom
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Description: added new configuration to generate a pubconf file
in the c++/src directory, H5cxx_pubconf.h. When C++
compiler recognizes 'offsetof', the macro
H5_CXX_HAVE_OFFSETOF is defined in the new
pubconf file.
tested: kagiso, smirom
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On Windows, Mingw interprets all parameters starting with '/' as paths, and replaces the '/' with its home directory, "C:\Windows\msys\". This was a problem in h5diff tests such as:
h5diff h5diff_101.txt $FILE1 $FILE1 /g1/d1 g1/d2 -v
I've removed the leading '/', as h5diff will interpret it the same either way.
Tested:
kagiso, linew, and smirom, via h5committest
mingw on Windows XP
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DEFAULT_VFD).
Description: Changes made during this checkin need to be greatly
modified, so I'm removing them now rather than leaving them
in and fixing them later.
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test/Makefile.
Description: a new configure flag has been created that will now set a macro
in the test/Makefile. The flag is with-default-vfd=. When set to
a virtual file driver (e.g. "--with-default-vfd=sec2"), the macro
DEFAULT_VFD will hold this value.
Tested: kagiso, smirom, linew
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doesn't return correct
file size from MPI_File_get_size. Bypass this problem by replacing it with
stat. Add an option --disable-mpi-size in configure to indicate this function
doesn't work properly. Add a test in testpar/t_mpi.c, too. If it returns wrong
file size, print out a warning.
Tested on kagiso (parallel) because already tested the same change to v1.6 on
several platforms (kagiso, cobalt, copper, and sol).
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Regenerate configuration files after latest checkin
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Early detection of no arguments, print usage and exit
Tested: linux
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most recent versions of the autotools.
Updated autotool versions are: autoconf 2.61, automake 1.10.0, and libtool 1.5.22.
Tested on kagiso.
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Bug fix: the macro used for percentage in the unsigned types needed a cast to signed (the difference can be negative)
Unlike the 1.6 branch the unsigned long long conversion to float is supported by H5Tconvert , so the test commented for 1.6 is run (tools/testfiles/h5diff_16_2.txt)
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some comments in the
template file config/Makefile.am.blank.
This is just a cleanup checkin. Tested on kagiso.
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commented a test that fails cross platforms and renamed files
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renamed files for more easy browsing
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clean comments
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Revision of the percent tests to have all the same data
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bin/makehelp (formatting
the output in the makefile was pretty hard).
Tested that make still works on kagiso; no code changes at all.
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Description: Multiple copies of Copyright appeared in Makefile.in. This was
due to automake copying the copyright right in the included files such as
config/commence.am.
Solution: Automake treats double hashes as comments and does not copy them
to Makefile.in. Changed all the copyright notices in config/*.am to use
double hashes for the Copyright right notice.
Tested: kagiso via bin/reconfigure.
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Dependency line
in the Makefile.
Makefile change only. Tested on kagiso, to be used to test on cobalt.
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Ran reconfigure to generate the Makefile.in files.
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Tested: visual inspection as they are all just comments.
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copyright notice.
Tested platform:
Kagiso only since it is only a comment block change. If it works in one
machine, it should work in all, I hope. Still need to check the parallel
build on copper.
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It seems that while Cygwin supports the time command, it has trouble with
the syntax
srcdir="../../hdf5/test" time ./testhdf5
and complains.
The solution is to test the above case in configure and not to use the time
command if it fails; Cygwin is fine with
srcdir="../../hdf5/test" ./testhdf5
Tested on Cygwin and kagiso. This feature shouldn't be a major compatibility
problem since every platform but Cygwin is already fine with the current
syntax.
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avoid usage to call exit(1), it makes processes to stop in parallel.
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fixed warning
../../../hdf5/tools/h5diff/h5diff_common.c: In function `usage':
../../../hdf5/tools/h5diff/h5diff_common.c:346: warning: function might be possible candidate for attribute `noreturn'
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more compiler warning
../../../hdf5/tools/h5diff/h5diffgentest.c:111: warning: passing arg 1 of `test_hyperslab' discards qualifiers from pointer target type
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Cleaned warnings
h5diff_array.c:804: warning: passing arg 1 of `fabs' as floating rather
than integer due to prototype
introduced double precision arithmetic when possible instead of single
precision
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Added a relative error formula to deal with floating point uncertainty
in the comparison of floats and double types.
Added new tests for this feature to the file generator program and to
the shell script
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changed the usage message relative to the relative error formula to a more
common and easy to understand form | (b-a) / a |
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The version of libtool used by HDF5 isn't directly affected by the reconfigure
script; instead, libtoolize --force must be used by hand. Libtool was the
source of the problem, so rolling its version back to 1.5.14 should solve the
issue (at least temporarily).
Reconfigure should still work on both heping and kagiso.
Tested on heping, kagiso, and tg-login3.
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Hopefully this will fix
issues on tg-login3.
bin/reconfigure should still work on both heping/mir and kagiso.
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Should disable linking against shared libraries in Fortran for compilers that
don't support shared libraries.
Should also fix problem when the wrong Fortran file extension was specified.
If these changes don't solve the Daily Test issues, I'll look at backing out
the autotool version change until I have time to fix them.
Tested on heping, kagiso, juniper.
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Linux machines.
Updated to the latest versions of autotools.
Tested on kagiso, heping, and juniper. Let me know if you have any problems.
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added a new test for h5diff relative error for the file generator
program
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h5diff: print a message of "not comparable" in a case where the relative error
compare is not possible, due to the denominator being zero. Modified
the test file generator program to include a example for this and a new
test on the shell script
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1) added a new parameter to the h5diff function diff_array that contains
the beginning position of the hyperslab, so that the total position in
the array is printed correctly when reading by hyperslabs.
2) added a new test to h5diff that reads and diffs by hyperslabs. The
test reads a 1GB dataset, from which a 1KB hyperslab was written with
differences .
3) added the generation of 2 files to the generator program to test the
h5diff hyperslab read.
4) changed the h5diff binary pre-generated file names to be more
descriptive (e.g, instead of file1.h5, made it h5diff_basic1.h5)
5) changed the name of the h5repack options text file to info.h5repack
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only tested
if it is enabled.
Added Direct VFD status to the configure summary.
Removed a line left over from pablo support. Oops!
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Add "use the latest format" support for dataspace object header encode/
decode routines and clean up format a bit for the latest format (new to 1.8.x
releases)
Remove storing 'perm' parameter for array datatypes in memory and the file,
and add test to make certain that if any user applications are attempting to
store them, we get some reports back. (Should be unlikely, since the RefMan
says that the parameter is not implemented and is unsupported).
Carry those changes into the tests, etc.
Clean up a bunch more compiler warnings.
Tested on:
FreeBSD/32 4.11 (sleipnir) w/threadsafe
Linux/32 2.4 (heping) w/FORTRAN & C++
Linux/64 2.4 (mir) w/enable-1.6-compat
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utility
and quote its arguments. Also checks for the 'socket' library on
Solaris.
If this patch passes the Daily Tests and makes the user happy, I'll
port it back to the 1.6 branch.
Tested on mir and sol.
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File format is not stable, don't keep files produced!
Description:
First stage of checkins modifying the format of groups to support creation
order. Implement "dense" storage for links in groups.
Try to clarify some of the symbols for the H5L API.
Add the H5Pset_latest_format() flag for FAPLs, to choose to use the newest
file format options (including "dense" link storage in groups)
Add the H5Pset_track_creation_order() flag for GCPLs, to enable creation
order tracking in groups (although no index on creation order yet).
Remove --enable-group-revision configure flag, as file format issues are
now handled in a backwardly/forwardly compatible way.
Clean up lots of compiler warnings and other minor formatting issues.
Tested on:
FreeBSD/32 4.11 (sleipnir) w/threadsafe
Linux/32 2.4 (heping) w/FORTRAN & C++
Linux/64 2.4 (mir) w/enable-v1.6 compa
Mac OSX/32 10.4.8 (amazon)
AIX 5.3 (copper) w/parallel & FORTRAN
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output to the
parallel part of h5diff
tested : heping parallel
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the number of atribute differences was not added to the total sum of
differences
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Since these examples need to follow filesystem paths, the Makefiles need
to create directories in the examples directory; added this to the
Makefile.am.
Tested on Windows, mir, juniper
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VFD is being used
when a test is run.
Running reconfigure also regenerated error header files (because someone edited
them manually?).
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Users can create external links using H5L_create_external(). These links
point to an object in another HDF5 file. Users can alter the behavior of
external links or create new kinds of links by registering callbacks
using the H5L interface.
Added tests, tools support, etc.
Also a number of other, minor changes have been made (some restructuring of
the H5L interface, for instance).
Additional documentation and examples are forthcoming.
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