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* [svn-r11069] Purpose:Leon Arber2005-07-131-1/+2
| | | | | | | | | | | | | | | | Bug fix Description: The testh5diff.sh script fails on mcr because of random srun messages thrown into the output Solution: Added some code to filter out the srun messages before the output is compared. Platforms tested: LLNL mcr Misc. update:
* [svn-r11042] Purpose:Quincey Koziol2005-07-071-7/+7
| | | | | | | | | | | | | | | | | | Bug fix Description: The ".chksh" file for a test script was being created in the "source" location rather than the build location. This can cause problems when multiple builds are running because "slower" machines will see the ".cshsh" file from faster machines and will not run the test script as they should. Solution: Use 'basename' command to strip off the path of the script and create the ".chksh" file in the build location. Platforms tested: FreeBSD 4.11 (sleipnir) h5committest
* [svn-r11034] Purpose:Albert Cheng2005-07-071-4/+2
| | | | | | | | | | | | | | | | | bug fix. Description: -nt is not a universal option for the test command in all platforms. The use of it in conclude.am cause some platforms to bark at the Makefile generated. Solution: Created a command script bin/newer which tests if file1 is newer than file2. Replace the "test file1 -nt file2" by "newer file1 file2". Platforms tested: Tested in sol.
* [svn-r11013] Purpose:James Laird2005-07-011-7/+7
| | | | | | | | | | | | | | | | | | Bug fix Description: Fixed bugs that caused tests to be unable to find testhdf5.sh during daily tests, and another that broke sol and shanti. Solution: When tests are run, their path is ./$testname . When scripts are run, their path has no leading "./". Fixed. Sol and shanti don't recognize the -e option for test, but they do know -f. Fixed. Also modified release notes. Platforms tested: mir, shanti, heping
* [svn-r11008] Purpose:James Laird2005-06-302-92/+84
| | | | | | | | | | | | | | | | | | | | | | Feature: tests now use parallel make and only run once Description: When make is invoked in parallel (using the -j option), several tests will now be run simultaneously. This should speed up testing on a number of systems. When a test passes, it creates a foo.chkexe or foo.chksh file, which prevents the test from running again unless the test or library changes. Solution: Most of the changes live in config/conclude.am. Added *.chkexe and *.chksh files to the list of files to be cleaned at "make mostlyclean" time. Parallel tests still run one at a time, but use the same make instructions as serial tests. Platforms tested: mir, eirene, sleipnir, pommier, copper, modi4 (some errors occurred, probably due to the test being run before updating hdf5. Will re-run tests after checkin.)
* [svn-r11005] Purpose:Pedro Vicente Nunes2005-06-301-33/+21
| | | | | | | | | | | | | | | | | | | bug fix Description: the numbers of differences was not printed for each object Solution: print it Platforms tested: linux solaris aix Misc. update:
* [svn-r10996] Purpose:Leon Arber2005-06-283-41/+37
| | | | | | | | | | | | | | | | | | | | | | | Bug fix for parallel case for new "Some objects were not comparable" patch to h5diff. Description: The parallel h5diff wouldn't print out "Some objects were not comparable" because the worker tasks were not communicating the not_cmp flag of the diff_opt_t struct back to the manager, who ultimately prints everything. Also, some miscellaneous fixes for error printing. Some errors were printed out with printf instead of fprintf(stderr,...). In parallel environments, this can result in output getting lost. Solution: Had the worker tasks pass along the not_cmp flag to the manager when they sent along the number of differences they found. Platforms tested: heping (pp), sol (pp) Misc. update:
* [svn-r10995] Purpose:Pedro Vicente Nunes2005-06-281-1/+5
| | | | | | | | | | | | | | modified the script test so that when the test files do not exist , they are created Description: Solution: Platforms tested: linux solaris Misc. update:
* [svn-r10994] Purpose:Pedro Vicente Nunes2005-06-281-144/+170
| | | | | | | | | | | | | | | | | | | | | bug fix Description: when 2 objects were not comparable, the final print information for the non verbose mode printed "0 differences found" Solution: replaced instead with a Summary message that says "Some objects were not comparable" Platforms tested: linux solaris Misc. update:
* [svn-r10865] Purpose:Albert Cheng2005-06-071-3/+8
| | | | | | | | | | | | | | | | Improvement Description: The actual stderr output was modified by the FILTER and was not available for display if errors detected later. Solution: Copy the actual stderr to a temporary file and do filtering on that. Platforms tested: LANL Flash. Misc. update:
* [svn-r10858] Purpose:Albert Cheng2005-06-041-4/+15
| | | | | | | | | | | bug fix. Description: The check-s and check-p targets are not recursively passes down. Make them so. Platforms tested: heping (serial and pp).
* [svn-r10850] Purpose:Albert Cheng2005-06-032-11/+6
| | | | | | | | | | | | | Improvement. Description: assign testph5diff.sh to the Parallel test scripts so that it will be tested for the check-p target. Platforms tested: heping pp. Misc. update:
* [svn-r10849] Purpose:Albert Cheng2005-06-021-1/+3
| | | | | | | | | | | | | | | | | | bug fix Description: check-s and check-p were set as pre-requistics of test. They would get executed in parallel if parallel make is used. This could cause problems since serial tests are used to be executed before parallel tests. It is not known if it is always okay to run serial and parallel tests in simultantously. Solution: Change check-s and check-p as actions of the target test so that they get executed sequnentially. Platforms tested: heping PP.
* [svn-r10840] Purpose:James Laird2005-06-021-6/+36
| | | | | | | | | | | Added check-s and check-p targets. Description: Added check-s and check-p targets to 1.7 branch to match changes to 1.6 branch. Now parallel and serial tests can be run separately. Platforms tested: mir, modi4, copper
* [svn-r10829] Purpose:Albert Cheng2005-05-311-11/+35
| | | | | | | | | | | | | | | Bug fix Description: Various system or software (e.g. MPE) will print some diagnosis messages to stderr that cannot be suppressed. They messed up the output matching. Installed the STDERR_FILTER() to remove all these messages. Platforms tested: LANL flash. Misc. update:
* [svn-r10630] Purpose:Quincey Koziol2005-04-192-2/+2
| | | | | | | | | | | Cleanup Description: Add some new test files to the 'distclean' target. Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r10570] Purpose: MaintenanceElena Pourmal2005-04-071-4/+0
| | | | | | | | | | | Description: Removed support for SRB driver Solution: Removed or modified appropriate files; ran reconfigure to regenerate Makefile.in and configure files. Platforms tested: heping and shanti Misc. update: ran bin/chkmanifest on heping
* [svn-r10534] Purpose:James Laird2005-04-041-0/+1
| | | | | | | | | | | | | | | | | | | | Configuration feature Description: Different Fortran compilers mangle function names in different ways (upper case, lower case, adding underscores). To link between Fortran and C functions, we need to know what a given function's name is under a given compiler. Solution: Use autoconf's FC_WRAPPERS check to determine the Fortran naming scheme and define the FC_FUNC_ macro to name our functions (in H5f90proto.h). Removed references to our old FNAME macro, as well as flags that indicated whether function names were upper or lower case. Platforms tested: mir, pommier, modi4, copper, more
* [svn-r10517] Purpose:James Laird2005-03-311-6/+15
| | | | | | | | | | | | | | | | Bug fix Description: On some machines, $RUNSERIAL variable needs to be used to run tests. Set $RUNTESTS (which is used for non-parallel tests) to be $RUNSERIAL in configure.am. Also, since I was updating all Makefiles.in anyway, I updated commence.am to point to autotools installs in AFS instead of those on heping. Platforms tested: mir, sleipnir, modi4, copper
* [svn-r10511] James Laird2005-03-301-1/+6
| | | | | | | | | | | | | Purpose: "Bug fix" Description: Hardcoded Makefiles to use /bin/sh instead of letting configure detect shell automatically. This is what v1.6 does, and avoids problems on janus. Platforms tested: sleipnir, copper, modi4, mir
* [svn-r10475] Purpose:James Laird2005-03-291-0/+2
| | | | | | | | | | | | | | | | | Feature - conditional compilation Description: SRB file driver and tests are now compiled only when SRB is enabled (using --with-srb during configure). Solution: Added an automake conditional in configure.in, altered Makefiles.am in src and test directories to depend on that conditional. This should make a nice example for posterity to add conditionally compiled sources. Platforms tested: heping (only configure change)
* [svn-r10459] James Laird2005-03-281-0/+1
| | | | | | | | | | | | | | | | | Purpose: Added C++ wrapper for Packet Table API. Description: Added macro for high-level C++ library (LIBH5CPP_HL), which changes every Makefile.in. Added directories for high-level C++ library (though currently only Packet Table API is supported). Added both C++ source and tests. Platforms tested: sleipnir, mir, modi4 Misc. update:
* [svn-r10206] Leon Arber2005-03-131-3/+1
| | | | | | | | | | | | | | | | | | | | | | | | | Purpose: Bug fix. Description: ph5diff fails on modi4 due to the way snprintf works on IRIX. Solution: The C99 standard says that, if there isn't enough room in the string, snprintf should return the number of characters that would have been written to the output string if there were enough room. The snprintf on modi4 would return the number of characters that is was able to write succesfully to the string if space ran out. The ph5diff logic that checks if the output buffer was full did not handle this sort of return value correctly. Used VSNPRINTF_WORKS from configure test to check how snprintf works and do the logic accordingly. Platforms tested: modi4 Misc. update:
* [svn-r10170] Purpose:Leon Arber2005-03-091-9/+38
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug Fixes Description: Fixes for several bugs, including dumping of excess output to a temporary file, fix for printing hsize_t datatype, and the long awaited fix for intermixed output. Solution: Fix 1: Overflow file Previously, any output that a worker task made was buffered locally in memory, up to a point. Any output beyond the size of the buffer (used to be 10k) was discarded. Now, the memory buffer size has been changed to 1k and any output beyond this amount is sent a temporary file. This way, no output is lost and memory usage is kept under control. The temporary file is deleted as soon as a worker task finishes sending its contents to the manager. Fix 2: hsize_t printing Printing of the hsize_t datatype used to be handled by %Hu passed to HDfprintf. However, there is no corresponding HDvsnprintf that is able to print hsize_t types. These are now printed with the aid of H5_PRINTF_LL_WIDTH. Fix 3: Intermixed output fix Intermixed output would occur on some machines (although I haven't seen it happen for a while) due to the unpredictability of the underlying network and the speed at which various message would travel. This has been fixed by having all output send to the manager for printing. The worker tasks no longer print the output themselves upon receipt of a token, but instead send that data to the manager. Platforms tested: heping, eirene, tg-login (the only place that seems to still experience intermixed output every now and then) Misc. update:
* [svn-r10158] Purpose:James Laird2005-03-071-168/+264
| | | | | | | | | | | | | | | | | | | | | | Automake version upgrade Description: Upgraded automake version from 1.6.2 to 1.9.5. Changed bin/reconfigure script to use automake 1.9.5. Changed configure.in and Makefiles to use new FCFLAGS and FC variables instead of FFLAGS and F9X. Automake and configure should now do the lion's share of the work supporting Fortran 9X; macros in acsite.m4 are now mostly unused (will be cleaned later). Altered how configure handles pmake; now root-level Makefile.in is processed by bin/reconfigure to have a .MAKEFLAGS target, since automake no longer allows us to define unused variables. Configure now always checks for C++ compiler even if it is not used, since automake thinks this is the Right Thing To Do and will break otherwise. Platforms tested: Sol, copper, heping, mir, sleipnir, eirene, pommier, kelgia, modi4.
* [svn-r10144] Purpose:Quincey Koziol2005-03-041-0/+1
| | | | | | | | | | | | | | | | Bug fix Description: The GASS VFL driver header file was bringing in the <string.h> header file, which several other source code modules needed also, but weren't including explicitly themselves. Solution: Add includes for <string.h> to files which actually need them. Platforms tested: FreeBSD 4.11 (sleipnir) w/C++ as CC Configuration not tested by h5committest...
* [svn-r10136] Purpose:Albert Cheng2005-03-031-2/+8
| | | | | | | | | | | | | | | | Bug fix. Description: MPI_LONG_LONG, which is not standard yet, was used to pass the nubmer of differences found. This was needed because number of differences is defined as type hsize_t which can be arbitary large such that there is no MPI type that matches it. The value is passed between processes as an array of bytes in order to be portable. But this may not work in non-homogeneous MPI environments. This fix was actually Leon's idea. Platforms tested: Tested in QSC in which this failed.
* [svn-r10123] Purpose:Albert Cheng2005-03-021-3/+0
| | | | | | | | | | | | | | | | | | | | | | | Removed GASS configuration and software packages associated with it. The following software are no longer configurable. checking for main in -lcrypto... yes checking for SSL_get_version in -lssl... yes checking globus_common.h usability... yes checking globus_common.h presence... yes checking for globus_common.h... yes checking for globus_module_activate in -lglobus_common... yes checking for main in -lglobus_gass_cache... yes checking for main in -lglobus_gaa... yes checking for main in -lglobus_gss... yes checking for main in -lglobus_gss_assist... yes checking for main in -lglobus_io... yes checking for main in -lglobus_gass_transfer_assist... yes checking for main in -lglobus_gass_transfer... yes checking for globus_gass_open in -lglobus_gass_file... yes Platforms tested: h5committested (but copper was down.) tested in modi4 too.
* [svn-r10066] Purpose:James Laird2005-02-231-0/+4
| | | | | | | | | | Libtool upgrade Description: HDF5 was using libtool 1.4.2. Upgraded to libtool 1.5.14. Platforms tested: verbena, heping, pommier, copper, modi4, arabica
* [svn-r10029] Purpose:Albert Cheng2005-02-171-3/+17
| | | | | | | | | | | | | | | | | | bug fix. Description: When MPE library is used, it prints two extra message lines that interfere with the expected output. Solution: Filter out those two lines of text from stderr. Also added a provision to print the whole generated output when failure is detected. Platforms tested: Tested in copper, serial, parallel and parallel with MPE. Misc. update:
* [svn-r10027] Purpose:Xiaowen Wu2005-02-171-0/+1
| | | | | | | | | | | | | | New feature. Description: Add the scaleoffset internal library filter. Solution: Platforms tested: heping, copper, arabica Misc. update:
* [svn-r10017] Purpose:Albert Cheng2005-02-167-571/+633
| | | | | | | | | | | | | | | | | bug fix/new feature. Description: (committing changes made by Leon.) ph5diff now is a real program by itself. It has its own main (ph5diff_main.c). Codes common to h5diff and ph5diff are in h5diff_common.c. Removed the hack that hide failures from testh5diff.sh. Platforms tested: heping(serial, pp), sol (pp), copper(pp). Misc. update:
* [svn-r10016] James Laird2005-02-161-1/+0
| | | | | | | | | | | | | | | | | | | Purpose: Bug fix Description: modi4 dies during build with strange errors. The root cause of these is a two-year-old hack in HDF5's libtool script that only takes effect on IRIX. Solution: Edited the libtool hack (by editing ltmain.sh) to correct a bug in the hack. Also made sure that compiler-specific DEFAULT_LIBS are used when linking. Platforms tested: sleipnir, copper, modi4, sol
* [svn-r10007] Purpose:Albert Cheng2005-02-151-6/+7
| | | | | | | | | | | | | | Bug fix. Description: ph5diff is still being fixed. Changed this to report all failures but will not flag them as errors so that daily tests can continue. Will be fixed soon. Platforms tested: Tested in sol (pp) where it has most failures. Misc. update:
* [svn-r9998] Leon Arber2005-02-131-6/+15
| | | | | | | | | | | | | | | | | | | | | | | | Purpose: Bug fix Description: Fixed the error on copper where output would match, except the worker tasks are forcefuly terminated at the end. Solution: If an exit code other than 0 was returned, the parallel environment would assume that there was an error and would terminate all other tasks. Because h5repack relies on the return value of h5diff, it was necessary to return values other than 0. Fixed by having parallel runs of h5diff always return 0, whereas the return value of serial runs is unchanged. Platforms tested: copper Misc. update:
* [svn-r9993] Purpose:James Laird2005-02-112-2/+2
| | | | | | | | | | | | | | | | | | | | Bug fix Description: Arabica exhibited strange errors when linker found wrong versions of header files. This happened because include directories were given to linker in the wrong order. Solution: Move include directories from AM_CFLAGS variable to INCLUDES variable to put them before CPPFLAGS variable. Trust me, it works. This bug may also have contributed to strange errors on other platforms (kelgia?). Platforms tested: copper, sleipnir, arabica. (h5dump broke while building on arabica, but this happened in a clean checkout, too).
* [svn-r9988] Purpose:James Laird2005-02-111-15/+4
| | | | | | | | | | | | | | | | | | | | Bug fix Description: pmake (on modi4, for instance) complains about undefined variables if it is run without the -V flag, which turns those errors to warnings. Solution: Added test to configure.in to see if $MAKE will allow Makefiles with undefined variables. If not, sets -V flag in AM_MAKEFLAGS. Ensured that all custom make targets use AM_MAKEFLAGS. Also defined all variables that caused errors in top-level Makefile.am. This means that pmake can be used to build hdf5 *from the top level only*. To run make from a subdirectory, still need to use -V flag (or use make or gmake). Platforms tested: modi4, heping, copper, sleipnir
* [svn-r9980] Purpose:Albert Cheng2005-02-101-6/+2
| | | | | | | | | | | | | | | | bug fix. Description: Need eval before the RUNCMD command because some machines like AIX, has RUNPARALLEL in the style as MP_PROCS=3 MP_TASKS_PER_NODE=3 poe ./a.out that throws the shell script off. Platforms tested: Tested in copper (pp) where it failed before. Tested in heping pp too. Misc. update:
* [svn-r9979] Purpose:Albert Cheng2005-02-101-1/+0
| | | | | | | | | | | | | | | | Bug fixed. Description: Heping used to have a network limit that if too many rsh connections occurred in a second, it stopped accepting connections for 30 seconds. That caused testph5diff to fail when too many mpi jobs are executed repidly. A sleep 2 was in to go around this problem. Heping's limit has been raised, thus no more need for this hack. Sleep 2 is removed. Platforms tested: Tested in heping (pp). Misc. update:
* [svn-r9969] Purpose:Leon Arber2005-02-091-0/+3
| | | | | | | | | | | | | | | | | | | Correction to previous print_manager_output bugfix Description: Although the previous bugfix did fix all the errors, it was not the correct way to fix the problem. Since the manager will only buffer output when run in parallel mode, in serial mode this function should not even be called. Solution: Wrapped print_manager_output in #define's to prevent it from being included in serial builds. Platforms tested: heping (serial + parallel) Misc. update:
* [svn-r9968] Pedro Vicente Nunes2005-02-091-7/+7
| | | | | | | | | | | | | | | | | | | | | | Purpose: bug fix Description: a string with 2 characters was declared as having size 2. changed to size 3 (+ null character) this was causing compiler warnings with g++ Solution: Platforms tested: linux free bsd (g++) Misc. update:
* [svn-r9956] Purpose:Leon Arber2005-02-083-4/+15
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Fixed numerous ph5diff bugs. Description: Fixed manager output printing Fixed out of order output printing Fixed test script execution problem Temporary fix for large amounts of output overflowing buffer. Solution: The manager task buffers its output. However, since the manager task never gets a print token, this output was lost. Solution: new function called print_manager_output that prints buffered output is called in places where the manager buffers its output. printf was apparently buffering output. This means that a task would sometimes print even after it had given up its print token. Added fflush() call after printf() calls, which seems to have fixed the problem. calling rsh multiple times in succession seems to overwhelm something in Linux, as it begins to refuse new connections until the old ones reset. Since each call to mpirun in the test script starts up 4 rsh sessions, the test script eventually is unable to run any further tests. Solution: Added a short delay in the testscript between successive calls to mpirun to allow old connections to reset. The 10k output buffer was of insufficient size to hold the large amounts of output generated by some of the tests. Since code to buffer to a file has not been implemented yet, a temporary fix was to increase the size of the output buffer to 50k. Platforms tested: heping Misc. update:
* [svn-r9949] Purpose:Albert Cheng2005-02-071-63/+122
| | | | | | | | | | | | | | | | | Bug fix Description: h5diff sometimes will 'exit(status)' but if it is in parallel mode, it needs to close up the workers and the MPI environment before exit(..). Solution: Created h5diff_exit() that will just exit in serial mode but does all the shutdown properly if in parallel mode. Platforms tested: tested in heping, serial and parallel. Misc. update:
* [svn-r9945] Purpose:Albert Cheng2005-02-062-48/+67
| | | | | | | | | | | | | | | Bug fix Description: h5diff_main.c contained some debug printf statment that produced unexpected output. Commented them out. testh5diff.sh: implemented code to test ph5diff tests but ph5diff has some errors that generated unexpected output. Temporary hacked to skip tests if run by daily test account. Platforms tested: Tested in heping, serial and parallel.
* [svn-r9931] Purpose:Albert Cheng2005-02-042-2/+98
| | | | | | | | | | | new features Description: Added a parallel option to testh5diff.sh to do parallel h5diff tests. Added testph5diff.sh to invoke testh5diff.sh with parallel mode. Platforms tested: Tested in heping (serial and pp).
* [svn-r9929] Purpose:Albert Cheng2005-02-032-13/+62
| | | | | | | | | | | | | Features Description: Added the option to build ph5diff and run testphdf5.sh when parallel mode is enabled. Platforms tested: tested in heping, both serial and parallel. Misc. update:
* [svn-r9928] Purpose:Quincey Koziol2005-02-031-1/+1
| | | | | | | | | | | | | New feature Description: Add basic code for new B-tree implementation. They don't do much yet, aren't hooked up to anything yet and the format may change, but I'd like to start getting them into the daily tests. Platforms tested: FreeBSD 4.11 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r9925] Purpose:Leon Arber2005-02-021-23/+40
| | | | | | | | | | | | | | | | | | | Bug Fix Description: Permanent fix for the incompatibilities between h5diff and h5repack. Solution: h5diff now contains the code to run both parallel and serial diffs. Depending on how the binary is called, it will run either the serial or the parallel versions respectively. Platforms tested: heping(serial + parallel), copper. Misc. update:
* [svn-r9920] Purpose:James Laird2005-02-021-2/+3
| | | | | | | | | | | | | | | | | | | Bug fix Description: Found the permanant fix to automake/CVS dependency problem Solution: Added AM_MAINTAINER_MODE macro to configure.in. Now automake will never try to regenerate Makefiles, Makefiles.in, configure, H5config.h, etc. when they are out of date, nor will it print any warnings. Developers should be very very careful to use reconfigure script, and can add --enable-maintainer-mode flag to configure on heping to regenerate these files correctly. Platforms tested: heping sleipnir copper
* [svn-r9915] Purpose:James Laird2005-02-021-6/+6
| | | | | | | | | | | | | | | Bug fix Description: Configuration files' timestamps were incorrect. Solution: Update Makefiles.in. Also added correct paths to autotools on heping, so heping build should be able to re-generate configuration files even if they are still broken. Platforms tested: sleipnir
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