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* [svn-r8985] Purpose:Quincey Koziol2004-08-021-18/+18
| | | | | | | | | | | | | | | | | | | | | Bug fixes & code cleanups Description: Backport MPI-I/O changes from the development branch to the release branch in preparation for bringing Kent's collective chunk I/O changes back. Removed last vestiges of FPHDF5 from this branch, as it was never working here. Various code cleanups & syncrontizations to better align with development branch code and reduce diffs. Regenerate dependencies. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel IRIX64 6.5 (modi4) h5committested
* [svn-r8903] Purpose:Pedro Vicente Nunes2004-07-202-54/+86
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | h5diff and h5repack changes Description: h5diff introduced the following four modes of output: Normal mode: print the number of differences found and where they occured Report mode: print the above plus the differences Verbose mode: print the above plus a list of objects and warnings Quiet mode: do not print output (h5diff always returns an exit code of 1 when differences are found) h5repack added an extra parameter for SZIP filter (coding method) the new syntax is -f SZIP=<pixels per block,coding> (pixels per block is a even number in 2-32 and coding method is 'EC' or 'NN') Example of use: ./h5repack -i file1 -o file2 -f SZIP=8,NN -v updated usage messages, test scripts and files accordingly Solution: Platforms tested: linux solaris AIX Misc. update:
* [svn-r8399] Purpose:Quincey Koziol2004-04-201-57/+34
| | | | | Update depenvy files after h5repack import & add dependency file to h5repack directory.
* [svn-r8397] Purpose:Pedro Vicente Nunes2004-04-207-4240/+206
| | | | | | | | | | | | | | | | | | | | h5repack in 1.6 Description: 2 functions we re added to /src: H5Premove filter and H5Iget_file_id Solution: Platforms tested: linux solaris AIX Misc. update:
* [svn-r8396] This commit was manufactured by cvs2svn to create branch 'hdf5_1_6'.cvs2svn2004-04-204-0/+2149
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* [svn-r8384] Purpose:Quincey Koziol2004-04-182-196/+194
| | | | | | | | | | | | | Code cleanup Description: Clean up lots of warnings based on those reported from the SGI compilers as well as gcc. Platforms tested: SGI O3900, IRIX64 6.5 (Cheryl's SGI machine) FreeBSD 4.9 (sleipnir) w/ & w/o parallel h5committest
* [svn-r8023] This commit was manufactured by cvs2svn to create branch 'hdf5_1_6'.cvs2svn2004-01-063-0/+633
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* [svn-r7624] Purpose:Quincey Koziol2003-10-141-9/+6
| | | | | | | Updated dependencies and tracing information Platforms tested: Not necessary.
* [svn-r7419] Purpose:Albert Cheng2003-08-271-1/+5
| | | | | | | | | | | | | | | | | | bug fix Description: h5diff would incur a segmentation fault in Alpha clusters when the percentage option is used. This was due to memory aliagment issue when the options variable is declared as a local variable in main(). Moved the declaration to a global declaration. Platforms tested: "h5committested" And tested at cluster QT of SNL. Misc. update:
* [svn-r7399] Purpose:Quincey Koziol2003-08-251-116/+4
| | | | | | | | | | | | | | | | | | Code cleanup Description: Remove various "fixtype" routines which duplicate (and actually pre-date) the functionality in H5Tget_native_type in favor of having the tools call H5Tget_native_type(). This provides the same functionality (actually better functionality, since the old "fixtype" routines didn't handle alignment of compound fields correctly) and reduces the amount of code to maintain. Add additional tests to dump out a "complex" compound datatype which exercises more code in the library for aligning compound fields correctly. Platforms tested: FreeBSD 4.8 (sleipnir) h5committest
* [svn-r7390] Purpose:Quincey Koziol2003-08-221-1/+1
| | | | | | | | | | | Code cleanup Description: Return -1 for failed group iteration instead of 1 Platforms tested: FreeBSD 4.8 (sleipnir) h5committest
* [svn-r7124] Bill Wendling2003-06-301-3/+3
| | | | | | | | | | | | | | | | Purpose: Bug Fix Description: LIBTOOLS macro was being used but not defined. Solution: Removed the LIBTOOLS macro as it wasn't necessary Platforms tested: Modi4 (small fix) Misc. update:
* [svn-r7123] Purpose:Bill Wendling2003-06-301-1/+0
| | | | | | | | | | | | | | | | | Bug Fix Description: The SUBDIRS macro is now defined as "" in the config/commence.in file. We shouldn't have definitions of this macro before the inclusion of config/commence.in. Solution: Placed all definitions of SUBDIRS after config/commence.in inclusion. Platforms tested: Modi4 (Small fix yet again). Misc. update:
* [svn-r7109] Purpose:Quincey Koziol2003-06-261-3/+0
| | | | | | | | | | | Code cleanup Description: Clean up varios compiler warnings flagged by SGI compiler and gcc 3.3 Platforms tested: FreeBSD 4.8 (sleipnir) h5committest
* [svn-r7002] Purpose:Quincey Koziol2003-06-091-2/+8
| | | | | | | | | | | Code cleanup Description: Clean up warnings about unused stuff... Platforms tested: FreeBSD 4.8 (sleipnir) h5committest
* [svn-r6962] Purpose:Quincey Koziol2003-06-041-2/+8
| | | | | | | | | | Code cleanup Description: Update dependencies and tracing information Platforms tested: h5committested
* [svn-r6947] Purpose:Pedro Vicente Nunes2003-06-031-26/+26
| | | | | | | | | | | | | added some comments Description: Solution: Platforms tested: linux Misc. update:
* [svn-r6943] Purpose:Pedro Vicente Nunes2003-06-022-17/+35
| | | | | | | | | | | | | | | | | | | | | | bug fix Description: unsigned integers were not printed out correctly Solution: added %u and %lu to the list of formats Platforms tested: Windows 2000 (octopus) Linux 2.4 (rockaway) SunOS 5.7 (arabica) IRIX 6.5 (modi4) Misc. update:
* [svn-r6928] Purpose:Pedro Vicente Nunes2003-05-303-60/+630
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | h5diff support for long_long Description: added h5diff support for long_long; No automatic test was added because it seems that the printf format of long_long is slightly different in Linux and IRIX(modi4), because the diff command complained about a difference in the 2 test files for long_long; visually, it seems that in IRIX an extra space is added after the print (or maybe it is just me that is seeing extra spaces :=) this test is test 5.8, commented in testh5diff.sh Platforms tested: Windows 2000 (octopus) Linux 2.4 (rockaway) SunOS 5.7 (arabica) IRIX 6.5 (modi4) Misc. update:
* [svn-r6925] Purpose:Pedro Vicente Nunes2003-05-293-75/+161
| | | | | | | | | | | | | | | | | | | | | | | | bug fix Description: the signed / unsigned comparison was not properly handled. the fixtype function sets the sign for the memory type the same sign as found on disk and the array_diff function only handled signed cases Solution: addded for each INTEGER size type an OR condition with the unsigned version if the datatypes have different signs , comparison is NOT supported Platforms tested: Windows 2000 (octopus) Linux 2.4 (rockaway) SunOS 5.7 (arabica) IRIX 6.5 (modi4) Misc. update:
* [svn-r6915] Elena Pourmal2003-05-221-5/+5
| | | | | | | | | | | | | | | Purpose: bug fix for Tru64 and test of the latest szip library. Description: h5diff uses basename function that also is defined in the system string.h file. That caused compilation to fail. Solution: renamed basename to h5diff_basename Platforms tested: verbena, arabica, arabica-64, and PSC Compaq machine. Misc. update:
* [svn-r6911] Purpose:Pedro Vicente Nunes2003-05-221-2/+6
| | | | | | | | | | | | made the test file to compare be created if it does not exist Description: Solution: Platforms tested: Misc. update:
* [svn-r6897] Purpose:Pedro Vicente Nunes2003-05-191-37/+43
| | | | | | | | | | | | | | | | | | | fixed a typo on the usage message, redone the test files that deal with with Description: Solution: Platforms tested: Windows 2000 (octopus) Linux 2.4 (rockaway) SunOS 5.7 (arabica) IRIX 6.5 (modi4) Misc. update:
* [svn-r6894] Purpose:Pedro Vicente Nunes2003-05-195-1484/+1380
| | | | | | | | | | | | | | | | | | | changes of input/ output format Description: on web page /RFC/h5diff Solution: Platforms tested: Windows 2000 (octopus) Linux 2.4 (rockaway) SunOS 5.7 (arabica) IRIX 6.5 (modi4) Misc. update:
* [svn-r6849] Purpose:Pedro Vicente Nunes2003-05-122-499/+477
| | | | | | | | | | | | | | | | | | | | changed algorythm Description: changed the array_diff function to increment the read buffer with a size selected by an appropriate native data type. previously it was assumed, e.g. int size = 4 bytes Solution: Platforms tested: Linux 2.4 (rockaway) SunOS 5.7 (arabica, 64bit mode) IRIX 6.5 (modi4) Misc. update:
* [svn-r6844] Purpose:Pedro Vicente Nunes2003-05-102-125/+185
| | | | | | | | | | | | | | | | | | | | | | bug fix Description: datasets with different storage datatypes where not read to memory to same size types Solution: obtain the memory type and size, for the TWO datasets , with the "fixtype" function "upgrade" the smaller size to the larger if they are different added H5DIFF_DEBUG flag for print information Platforms tested: Linux 2.4 (rockaway) SunOS 5.7 (arabica, 64bit mode) IRIX 6.5 (modi4) Misc. update:
* [svn-r6827] Purpose:Pedro Vicente Nunes2003-05-073-33/+168
| | | | | | | | | | | | | | | | | | | | | | | | added new test files for h5diff bug fix Description: the criteria for determining the correct switch case cast to void* to type* was the data size read from disk. this was causing problems on Cray T3E, where all integer except char are 8 bytes long Solution: changed the criteria for using the memory size instead, which is determined by the same function that reads the data into memory the messages " using memory NATIVE_TYPE_X" were removed, because they might not coincid on different platforms. Platforms tested: Linux 2.4 (rockaway) SunOS 5.7 (arabica) IRIX 6.5 (modi4) Misc. update:
* [svn-r6825] Purpose:Quincey Koziol2003-05-071-1/+4
| | | | | | | | | | | | | | | | | | | | | | | | | New feature/enhancement Description: Chunked datasets are handled poorly in several circumstances involving certain selections and chunks that are too large for the chunk cache and/or chunks with filters, causing the chunk to be read from disk multiple times. Solution: Rearrange raw data I/O infrastructure to handle chunked datasets in a much more friendly way by creating a selection in memory and on disk for each chunk in a chunked dataset and performing all of the I/O on that chunk at one time. There are still some scalability (the current code attempts to create a selection for all the chunks in the dataset, instead of just the chunks that are accessed, requiring portions of the istore.c and fillval.c tests to be commented out) and performance issues, but checking this in will allow the changes to be tested by a much wider audience while I address the remaining issues. Platforms tested: h5committested, FreeBSD 4.8 (sleipnir) serial & parallel, Linux 2.4 (eirene)
* [svn-r6801] Purpose:Pedro Vicente Nunes2003-05-062-28/+2
| | | | | | | | | | | | | | | | | | | | | h5diff update Description: removed the -l , list, option this feature will be part of a different tool Solution: Platforms tested: Windows 2000 (octopus) Linux 2.4 (rockaway) SunOS 5.7 (arabica) IRIX 6.5 (modi4) Misc. update:
* [svn-r6789] Purpose:Pedro Vicente Nunes2003-05-012-9/+15
| | | | | | | | | | | | | | | | | | | new feature Description: during the sequencial match list, by default the differences between matched datasets were printed. added an -m option that allows to turn this off, just printing the file differences Solution: Platforms tested: Linux 2.4 (rockaway) SunOS 5.7 (arabica) IRIX 6.5 (modi4) Misc. update:
* [svn-r6771] Purpose:Pedro Vicente Nunes2003-04-283-194/+676
| | | | | | | | | | | | | | | | | | added more tests, described in the test matrix Description: test -r test -l expanded -d, -p and -n tests test different types to include links and named types test for non supported classes, e.g bitfield, opaque , etc Platforms tested: Linux 2.4 (rockaway) SunOS 5.7 (arabica) IRIX 6.5 (modi4) Misc. update:
* [svn-r6700] Purpose:Pedro Vicente Nunes2003-04-173-5/+221
| | | | | | | | | | | | | | | | | added tests 1.7, 1.8, 1.9 described in the test matrix Description: Solution: Platforms tested: Linux/rockaway(C) SunOS/arabica (C) SGI/modi4 (C) Misc. update:
* [svn-r6694] Purpose:Pedro Vicente Nunes2003-04-173-511/+411
| | | | | | | | | | | | | | | | added some niceties and utilities, and more tests Description: some niceties: more error messages on cases of bad input utilities: some functions to more human readable output more tests: described in the test matrix Platforms tested: Linux/rockaway(C) SunOS/arabica (C) SGI/modi4 (C)
* [svn-r6626] Purpose:Pedro Vicente Nunes2003-04-103-122/+471
| | | | | | | | | | | | | | | added new tests removed compiler warnings from unix platforms changed usage message Description: Solution: Platforms tested: w2000, linux, arabica, modi4 Misc. update:
* [svn-r6599] Purpose:Pedro Vicente Nunes2003-04-081-3/+5
| | | | | | | | | | | | | | | | | code warrior port Description: replaced strdup with HDstrdup for CW portability Solution: Platforms tested: w2000(CW , MS) linux arabica modi4 Misc. update:
* [svn-r6596] Purpose:Quincey Koziol2003-04-082-7/+7
| | | | | | | | | | | | | | | Code cleanup/bug fix Description: Clean up files created during testing. Solution: Platforms tested: FreeBSD 4.8 (sleipnir) Linux 2.4 (eirene) Misc. update:
* [svn-r6588] Purpose:Pedro Vicente Nunes2003-04-041-0/+13
| | | | | | | | | | | | | | | | | added more tests to automatic testing Description: added test for an invalid option letter added test for -h option added test for an invalid option -d added test for an invalid option -d number Solution: Platforms tested: linux, solaris, sgi Misc. update:
* [svn-r6587] Purpose:Pedro Vicente Nunes2003-04-042-1/+3
| | | | | | | | | | | | typo in usage message Description: Solution: Platforms tested: linux Misc. update:
* [svn-r6576] Purpose:Quincey Koziol2003-04-031-2/+40
| | | | | | | | | | | | | | Cleanup Description: Update dependencies. Solution: Platforms tested: Linux 2.4 (eirene) Misc. update:
* [svn-r6563] Purpose:Pedro Vicente Nunes2003-04-025-734/+485
| | | | | | | | | | | | | | | | | | | added test script for h5diff code cleaning for alpha release makefile now generates the h5difftst.c program that generates 2 .h5 files for testing Description: the .sh script runs several runs of h5diff and compares the output with a predifined output located in /tools/testfiles (.txt files) righ now it has only one test Solution: Platforms tested: linux (other platforms later , ok !? ) Misc. update:
* [svn-r6541] Purpose:Bill Wendling2003-03-313-9/+37
| | | | | | | | | | | | Update Description: Updated Copyright statements Platforms tested: None needed... Misc. update:
* [svn-r6526] Purpose:Pedro Vicente Nunes2003-03-271-186/+185
| | | | | | | | | | | | | | update Description: clean code , removed empty spaces, tested on solaris Solution: Platforms tested: w2000, linux, solaris Misc. update:
* [svn-r6521] Purpose:Pedro Vicente Nunes2003-03-261-296/+766
| | | | | | | | | | | | | | | | update Description: added the new cosequential match algorythm added extra checking of bad input values Platforms tested: w2000, linux Misc. update:
* [svn-r6469] Purpose:Pedro Vicente Nunes2003-03-061-46/+120
| | | | | | | | | | | h5diff bug fix, enhancements Description: the case for 8 byte integers was not handled added more checking of wrong input data Solution: added the size 8 integer case Platforms tested: w2000, linux, solaris (64 mode)
* [svn-r6466] Purpose:Pedro Vicente Nunes2003-03-061-358/+438
| | | | | | | | | | bug fix Description: some data not read correctly due to type_id used in read Solution: did a function that determines the optimal memory type Platforms tested: w2000, linux, solaris
* [svn-r6465] Purpose:Pedro Vicente Nunes2003-03-061-11/+106
| | | | | | | | | | | bug fixes in h5diff Description: there was a incorrect reading of arguments when only 1 object name was supplied reading of data was done using type_id got from disk, causing some values not read correctly into memory Solution: used native types to read into memory Platforms tested: w2000, linux, solaris57
* [svn-r6462] Purpose:Pedro Vicente Nunes2003-03-051-139/+285
| | | | | | | | | | | | | | | | h5diff enhancements Description: changed -r to count the number of differences, but do not print them changed the output format with some printf enginnering, to align columns print the dimensions of dsets, in case they are different test files added test for non supported data (class not integer or float) fix print dimensions to 0 index Platforms tested: w2000, linux, solaris
* [svn-r6441] Purpose:Pedro Vicente Nunes2003-02-271-125/+282
| | | | | | | | | | | | | | h5diff bugs and enhancements Description: added checking for not comparable datatypes added checking for the same dimensionality changed the functionality of -n option, to check up to n reported differences changed the formula for -p to relative error with absolute value fixed a bug on solaris, related to printf integer format (int datatype) Platforms tested: w2000, linux, solaris
* [svn-r6429] Purpose:Pedro Vicente Nunes2003-02-241-169/+151
| | | | | | | removed -d , -g , -t and -v options and renamed -m to -d and -v to -l added output for objects that are not in one file but in the other Platforms tested: windows, linux
* [svn-r6412] Purpose:Quincey Koziol2003-02-171-4/+6
| | | | | | | | | | Code cleanup Description: Update dependencies and clean up a few warnings. Platforms tested: Linux 2.2 (eirene) w/parallel
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