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* [svn-r25771] Bug fix: HDFFV-8954Albert Cheng2014-11-041-6/+1
| | | | | | | | | | | | | | Previously, ph5diff may hang in a test in Linux 32 platform(HDFFV-587). No solution was available and a patch to bypass the test is implemented. Since the company is changing domain name soon, the patch would not be valid any more. Tests were done (repeat 100 mpiexec -np 6 ./ph5diff -v h5diff_hyper1.h5 h5diff_hyper2.h5) and the previous hanging problem did not occur. It is likely the newer versions of mpich no longer have this problem. Therefore, it is decide to remove this patch to make the test script cleaner, if nothing else. Tested: ran build and test in Jam (linux 32) and the repeat 100 command mentioned above. All passed.
* [svn-r25741] Remove obsolete comment and add test to suite.Allen Byrne2014-10-271-6/+1
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* [svn-r25570] UNDO:Added option to build tools static when building shared ↵Allen Byrne2014-09-031-14/+4
| | | | | | | | libraries. This will prevent 'dll' being appended to the tool name on windows. See HDFFV-8292. Windows DLL linkage problem because of defines needed. Tested: local linux
* [svn-r25569] Added option to build tools static when building shared ↵Allen Byrne2014-09-031-4/+14
| | | | | | libraries. This will prevent 'dll' being appended to the tool name on windows. See HDFFV-8292. Tested: local linux
* [svn-r25496] Description:Quincey Koziol2014-07-301-13/+13
| | | | | | | | | Merge 64-bit ID changes from branch to trunk. (Plus a few minor cleanups that aren't on the branch) Tested on: Mac OSX/64 10.9.4 (amazon) w/C++ & FORTRAN (h5committested on branch already for a week)
* [svn-r25397] - remove configure checks for MPI_File_get_size and BigMohamad Chaarawi2014-07-071-1/+0
| | | | | MPI_File_set_size as they are supported by most MPI implementations. - fix bug in t_mpi.c (HDFFV-8856)
* [svn-r25188] Implement change to cmake_ext_mod config folderAllen Byrne2014-05-141-2/+2
| | | | Tested: local linux
* [svn-r25117] Removed LT_ADD_LIBHDF5_DEPENDENCY configure conditional to roll ↵Larry Knox2014-04-251-1/+0
| | | | | | | | | | | back fix for removing rpaths from l ib files. The fix also removed dependencies on libhdf5, etc. when the --disable-sharedlib-rpath co nfigure option was invoked. Added instead configure variable hardcode_into_lib=no. This removes rpath from lib files on Linux and solaris machines. Tested with h5committest on jam, koala, ostrich and platypus (cmake), and with configure option --disable-sharedlib-rpath on emu, platypus and quail.
* [svn-r25113] Fixed Subversion EOL and executable attributes. No code changes.Dana Robinson2014-04-253-24/+24
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* [svn-r25112] Description:Quincey Koziol2014-04-251-1/+4
| | | | | | | | Revert r25081 Tested on: MacOSX/64 10.9.2 (amazon) w/FORTRAN & parallel (h5committest not necessary)
* [svn-r25081] Bug HDFFV-8625, HDFFV-8639, HDFFV-8745:Albert Cheng2014-04-229-4/+36
| | | | | | | | | | | | h5diff issues "unable to read attribute" error message when comparing two files Description: h5diff did not handle attributes of variable length strings correctly. It created the wrong memory type if one but not both compared attributes are of the variable strings type. It ended in H5Aread() failure. Solution: We decided to treat the case when one type is variable length string and the other is not as incomparable. That bypassed the above error. We still need to figure out the proper way, if possible, to compare variable string with non-variable string types. Tested: h5committested plus tested in Swallow (OS X 10.8).
* [svn-r24948] Group tests by Common nameAllen Byrne2014-04-021-2/+2
| | | | | | Remove WIN32 AND NOT CYGWIN if blocks - should be just WIN32 Tested: local linux CMake
* [svn-r24932] HDFFV-8290: Remove unnecessary $(srcdir) and use AM_CPPFLAGS ↵Allen Byrne2014-03-312-76/+467
| | | | | | instead of INCLUDES. Update automake to 1.14.1 h5committest
* [svn-r24864] Description:Quincey Koziol2014-03-211-1/+0
| | | | | | | | | | | | | | | | | | Remove all traces of MPI-POSIX VFD and GPFS detection/code. Remove remaining traces of stream VFD. Remove testpar/t_posix_compliant test (it's not actually verifying anything). Clean up H5D__mpio_opt_possible() further. Moved environment variable that disables MPI collective operations into MPI-IO VFD (instead of it being in src/H5S.c). A few other small code cleanups. Tested on: Mac OSX/64 10.9.2 (amazon) w/parallel & serial
* [svn-r24824] HDFFV-8700 -Allen Byrne2014-03-181-1/+1
| | | | | | | | KitWare recommendations: Change CMake commands to lower case. Bump up CMake minimum versions. Split test file into separate file for h5repack test. Tested: local linux
* [svn-r24789] Bump up the minimum cmake versionAllen Byrne2014-03-131-1/+1
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* [svn-r24782] HDFFV-8700 -Allen Byrne2014-03-112-24/+24
| | | | KitWare recommendations: Change CMake commands to lower case.
* [svn-r24781] HDFFV-8700 -Allen Byrne2014-03-112-106/+106
| | | | | | | KitWare recommendations: Change CMake commands to lower case. Remove INCLUDE_DIRECTORIES in src for target level includes. Change ADD_DEFINITIONS package debug defines into CMake option. Remove -DNDEBUG
* [svn-r24480] Description:Quincey Koziol2013-11-301-99/+145
| | | | | | | | | | | Bring r24479 from 1.8 branch to trunk: Fix ph5diff worker command handling so it can correctly respond to situations where there's no work to perform. Also, a few minor code cleanups. Tested on: Mac OSX/64 10.9.0 (amazon) w/parallel (too minor to require h5committest)
* [svn-r24392] Cleanup testfiles from scripts. Update lists of files to be ↵Allen Byrne2013-11-011-0/+17
| | | | | | cleaned. CMake update to clean testfiles. Tested: local cmake, autools, and h5committest
* [svn-r24376] Updated all code to use HDmalloc, HDcalloc, and HDfree.Dana Robinson2013-10-312-12/+12
| | | | | | | | | | | | | Prep work for adding a memory free function, part of HDFFV-8551. Tested on: 32-bit LE linux (jam) * with C++, Fortran * with thread safety on These are minor changes (almost entirely renaming foo functions to HDfoo) that don't change functionality. This should not require a full commit test.
* [svn-r24270] checkin coverity changes from 10/4/2013.Mohamad Chaarawi2013-10-091-1/+1
| | | | tested with h5committest
* [svn-r24194] Don't add hdf5 library dependencies to lib files when ↵Larry Knox2013-09-241-0/+1
| | | | | | --disable-sharedlib-rpath configure option is invoked. Fix for HDFFV-8276. Tested with h5committest and on hdf-duck.
* [svn-r24138] Cast constants to specified type. Allen Byrne2013-09-131-3/+4
| | | | | | | | Cast smaller vars to larger type. Cast calculation result to correct type. Changed int member to hbool_t Tested: local linux
* [svn-r24030] Description:Quincey Koziol2013-08-191-26/+30
| | | | | | | | Clean up more compiler warnings. Tested on: Mac OSX/64 10.8.4 (amazon) w/gcc, C++ & FORTRAN (too minor to require h5committest)
* [svn-r24029] Move TESTS to seperate file to allow easier editing by all ↵Allen Byrne2013-08-192-1381/+1383
| | | | | | developers. Tested: local linux
* [svn-r24020] Description:Quincey Koziol2013-08-171-6/+3
| | | | | | | | Clean up compiler warnings Tested on: Mac OSX/64 10.8.4 (amazon) w/C++ & FORTRAN (too minor to require h5committest)
* [svn-r24011] Description:Quincey Koziol2013-08-151-0/+24
| | | | | | | | Clean up a few warnings Tested on: Mac OSX 10.8.4 (amazon) w/C++ & FORTRAN (too minor to require h5committest)
* [svn-r23917] Bug fix: HDFFV-8392Albert Cheng2013-07-182-2/+2
| | | | | | | | | | | | | | | | | | | tools/h5diff/testh5diff.sh is run in every "make check", even after it has passed in the previous run. The error was in the previous change made to Makefile.am when testh5diff.sh.in was created. The mistake was in the SCRIPT_DEPEND=h5diff$(EXEEXT) $(H5PDIFF) $(srcdir)/testh5diff.sh $(srcdir)/testh5diff.sh no longer existed. It is now generated in the current built directory from $(srcdir)/testh5diff.sh.in (which configure takes care of). I updated the dependance to SCRIPT_DEPEND=h5diff$(EXEEXT) $(H5PDIFF) testh5diff.sh and that fixes the error. Reviewed: HDF5-149 Tested: h5committested.
* [svn-r23811] Remove unused labelAllen Byrne2013-06-241-1/+0
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* [svn-r23745] HDFFV-8461: Add Windows /MT supportAllen Byrne2013-06-101-0/+3
| | | | This adds the UserMacros.cmake support needed.
* [svn-r23469] Description:Quincey Koziol2013-03-271-1/+4
| | | | | | | | | | | | | | | Change h5diff_exit() routine to always return a zero exit code when running in parallel, since returning a non-zero exit code can cause MPI implementations to print output and that can throw off our "expected output" comparisons. Note that this change only changes the exit code for situations where an incorrect command-line parameter was given - ph5diff was already returning a zero exit code for all "normal" executions, including those where a serial h5diff would return a non-zero exit code. Tested on: Mac OSX/64 10.8.3 (amazon) w/parallel (Too minor to require h5committest)
* [svn-r23305] HDFFV-8257: szip still used even if headers are not found. ↵Allen Byrne2013-02-181-1/+1
| | | | | | Change configure to test the result of the CHECK HEADERS call before checking for the library. Tested: local linux, h5committest
* [svn-r23304] Purpose:Jonathan Kim2013-02-183-4/+4
| | | | | | | | | | | | HDFFV-7643 - h5diff - incorrect exit-code returns for extra attribute exist Description: h5diff: Fixed to return correct exit code 1 when detect unique attribute. Prior to this fix, h5diff returned exit code 0 indicating two files are identical. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), fred (mac64-LE), emu (solaris-BE), Windows (32-LE cmake), cmake (jam)
* [svn-r23273] HDFFV-8311: Correct test dependencyAllen Byrne2013-02-141-13/+13
| | | | Tested: local linux
* [svn-r23160] HDFFV-8227: Mac DARWIN requires CMake 2.8.10Allen Byrne2013-01-141-1/+1
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* [svn-r22908] Reverted changes in revision 22819Larry Knox2012-10-161-2/+0
| | | | Tested with h5committest on jam, koala and ostrich.
* [svn-r22819] Added H5BLD_STATIC and HDF5_USE_SHLIB to configure.ac so that ↵Larry Knox2012-09-271-0/+2
| | | | | | if configured with --disable-static the default for HDF5_USE_SHLIB in the compile scripts will be changed to yes. This is a fix for HDFFV-8141, where the compile scripts try to link to non-existant static hdf5 libraries. Tested on jam,koala,ostrich(h5committest) and other THG machines.
* [svn-r22751] Purpose:Jonathan Kim2012-09-1011-16/+12
| | | | | | | | | | | | HDFFV-5919 - GMQS: h5diff - The number of object difference is not consistent between dataset and group/type when attribute(s) have differences Description: Object differences are not consistent between dataset and group/datatype when their attribute(s) have differences. This is because attribute(s) differences is not accumulated to group or datatype object’s difference, but accumulated to dataset difference. To fix, do not accumulate attribute difference to dataset difference. This is referred to h5diff’s default behavior and also past report from users that users were confused by the accumulated behavior. (also can’t figure out only for dataset difference , also hard to spot dataset difference when it has lots of attributes or differences) This also lead to fix inconsistent format indicating difference between dataset and group/datatype object. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), cmake (jam)
* [svn-r22720] Fix RelWithDebInfo packagingAllen Byrne2012-08-281-2/+2
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* [svn-r22718] Remove unneeded srcdir testAllen Byrne2012-08-271-5/+0
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* [svn-r22710] Remove reference to srcdir in TOOL pathAllen Byrne2012-08-231-1/+1
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* [svn-r22709] HDFFV-8129: reconfigured on jam, Remove overloading of ↵Allen Byrne2012-08-234-25/+28
| | | | | | autotools TESTS var, rename configure.in to configure.ac, convert test scripts from hard *.sh to configure managed *sh.in files. Tested: h5committest
* [svn-r22706] Updated autotools: autoconf 2.69, automake 1.12.3, m4 1.4.16, ↵Larry Knox2012-08-221-38/+91
| | | | | | libtool 2.4.2 Tested THG machines.
* [svn-r22691] Purpose:Jonathan Kim2012-08-161-2/+2
| | | | | | | | | | | HDFFV-7942 - h5diff: incorrect result for comparing attribute data with different type size in same class Description: This is additional fix due to daily build fail against previous r22684. Refer to the svn -r22684 log for previous details Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), cmake (jam)
* [svn-r22684] Purpose: Jonathan Kim2012-08-155-0/+40
| | | | | | | | | | | | Address HDFFV-7942 - h5diff: incorrect result for comparing attribute data with different type size in same class Description: When comparing attribute data values with same type class but different size, the result was incorrect. It was due to the size difference and got truncated. Fixed to match up the smaller type size to big type size like what dataset does. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), cmake (jam)
* [svn-r22618] Jonathan Kim2012-08-011-8/+1
| | | | | | | | | | | | | | Purpose: HDFFV-8003 - ph5diff (parallel h5diff): daily test failure on ember intermittently during non comparable test file comparison HDFFV-7755 - parallel h5diff : hanging on koala intermittently during non comparable test file comparison Description: non-comparable test intermittently hung on koala and ember, but not on jam. it didn't occur until -np reaches 4 or bigger. it occurred once out of many repeated attempts of the same test. There was a incorrectly (mistakenly?) duplicated code in MPI section which caused such hang in a certain condition. The test used more processes than other tests, which increased chance to trigger more undone processes, and such process could enter the incorrect code section and wait for wrong pair of send. it explains why it occurred intermittently according to machine condition and using a certain feature. Removed incorrect code which blocked correct code. Tested: some manually repeated test performed jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE)
* [svn-r22617] Purpose:Jonathan Kim2012-08-011-5/+16
| | | | | | | | | | | | | | | Fix for HDFFV-8107 testh5diff will fail if build/test in HDF5 source tree Description: This is sub-task for "HDFFV-8105 testh5diff.sh uses the wrong operator (-a) in an if statement." From the HDFFV-8105's update, h5diff test failed if build&test is performed in HDF5 source tree because 'cp' try to copy test files to self dir. It's addressed by skipping if cp's src dir and dest dir is same. Also this applied for all other tools under src/tools dir. No change to the CMakeLists.txt files because CMake cautions/demands that in-source builds be avoided. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), some manual tests as well
* [svn-r22594] Bug fix: HDFFV-8105Albert Cheng2012-07-221-4/+2
| | | | | | | | | | | | | | | Description: The test command in COPY_TESTFILES_TO_TESTDIR used the wrong operator -a which means and. It is not sufficient to test mere existence as $tstfile could have been a directory or other non-file things. If the file is not readable, the $CP command would fail but its return code was not checked. Solution: Get rid of the test command and go ahead to $CP it and then check its returned code and report errors if detected. Tested; committested. (note that ostrick still failed on errors committed by other staff).
* [svn-r22479] Remove subfolder tools from install commandAllen Byrne2012-06-201-4/+4
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