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* [svn-r25298] run reconfigure.Mohamad Chaarawi2014-06-161-0/+1
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* [svn-r25280] merge from latest VOL/trunk branch.Mohamad Chaarawi2014-06-1313-29/+63
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| * [svn-r25188] Implement change to cmake_ext_mod config folderAllen Byrne2014-05-141-2/+2
| | | | | | | | Tested: local linux
| * [svn-r25117] Removed LT_ADD_LIBHDF5_DEPENDENCY configure conditional to roll ↵Larry Knox2014-04-251-1/+0
| | | | | | | | | | | | | | | | | | | | | | back fix for removing rpaths from l ib files. The fix also removed dependencies on libhdf5, etc. when the --disable-sharedlib-rpath co nfigure option was invoked. Added instead configure variable hardcode_into_lib=no. This removes rpath from lib files on Linux and solaris machines. Tested with h5committest on jam, koala, ostrich and platypus (cmake), and with configure option --disable-sharedlib-rpath on emu, platypus and quail.
| * [svn-r25113] Fixed Subversion EOL and executable attributes. No code changes.Dana Robinson2014-04-253-24/+24
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| * [svn-r25112] Description:Quincey Koziol2014-04-251-1/+4
| | | | | | | | | | | | | | | | Revert r25081 Tested on: MacOSX/64 10.9.2 (amazon) w/FORTRAN & parallel (h5committest not necessary)
| * [svn-r25081] Bug HDFFV-8625, HDFFV-8639, HDFFV-8745:Albert Cheng2014-04-229-4/+36
| | | | | | | | | | | | | | | | | | | | | | | | h5diff issues "unable to read attribute" error message when comparing two files Description: h5diff did not handle attributes of variable length strings correctly. It created the wrong memory type if one but not both compared attributes are of the variable strings type. It ended in H5Aread() failure. Solution: We decided to treat the case when one type is variable length string and the other is not as incomparable. That bypassed the above error. We still need to figure out the proper way, if possible, to compare variable string with non-variable string types. Tested: h5committested plus tested in Swallow (OS X 10.8).
| * [svn-r24948] Group tests by Common nameAllen Byrne2014-04-021-2/+2
| | | | | | | | | | | | Remove WIN32 AND NOT CYGWIN if blocks - should be just WIN32 Tested: local linux CMake
* | [svn-r25272] reconfigureMohamad Chaarawi2014-06-121-0/+1
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* | [svn-r24942] merge from VOL branch.Mohamad Chaarawi2014-04-014-211/+601
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| * [svn-r24932] HDFFV-8290: Remove unnecessary $(srcdir) and use AM_CPPFLAGS ↵Allen Byrne2014-03-312-76/+467
| | | | | | | | | | | | instead of INCLUDES. Update automake to 1.14.1 h5committest
| * [svn-r24864] Description:Quincey Koziol2014-03-211-1/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Remove all traces of MPI-POSIX VFD and GPFS detection/code. Remove remaining traces of stream VFD. Remove testpar/t_posix_compliant test (it's not actually verifying anything). Clean up H5D__mpio_opt_possible() further. Moved environment variable that disables MPI collective operations into MPI-IO VFD (instead of it being in src/H5S.c). A few other small code cleanups. Tested on: Mac OSX/64 10.9.2 (amazon) w/parallel & serial
| * [svn-r24824] HDFFV-8700 -Allen Byrne2014-03-181-1/+1
| | | | | | | | | | | | | | | | KitWare recommendations: Change CMake commands to lower case. Bump up CMake minimum versions. Split test file into separate file for h5repack test. Tested: local linux
| * [svn-r24789] Bump up the minimum cmake versionAllen Byrne2014-03-131-1/+1
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| * [svn-r24782] HDFFV-8700 -Allen Byrne2014-03-112-24/+24
| | | | | | | | KitWare recommendations: Change CMake commands to lower case.
| * [svn-r24781] HDFFV-8700 -Allen Byrne2014-03-112-106/+106
| | | | | | | | | | | | | | KitWare recommendations: Change CMake commands to lower case. Remove INCLUDE_DIRECTORIES in src for target level includes. Change ADD_DEFINITIONS package debug defines into CMake option. Remove -DNDEBUG
* | [svn-r24884] another update to configure.Mohamad Chaarawi2014-03-241-1/+0
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* | [svn-r24880] add iod corrupt tool configure argumentMohamad Chaarawi2014-03-241-0/+2
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* | [svn-r24823] add --with-iodp for building old iod tarball for daos_pMohamad Chaarawi2014-03-181-0/+1
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* | [svn-r24793] Add indexing server implementation.Mohamad Chaarawi2014-03-131-0/+1
| | | | | | | | | | add indexing configure flag. add indexing files to Makefile.am
* | [svn-r24778] run reconfigure with new configure.ac changes.Mohamad Chaarawi2014-03-101-1/+1
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* | [svn-r24665] more IOD integrity integration.Mohamad Chaarawi2014-01-301-0/+2
| | | | | | | | add pkgconfig option for Mchecksum
* | [svn-r24594] Merge from VOL branch.Mohamad Chaarawi2013-12-264-111/+174
|\ \ | |/ | | | | Update plist encode/decode pre-generated files for newly added properties.
| * [svn-r24480] Description:Quincey Koziol2013-11-301-99/+145
| | | | | | | | | | | | | | | | | | | | | | Bring r24479 from 1.8 branch to trunk: Fix ph5diff worker command handling so it can correctly respond to situations where there's no work to perform. Also, a few minor code cleanups. Tested on: Mac OSX/64 10.9.0 (amazon) w/parallel (too minor to require h5committest)
| * [svn-r24392] Cleanup testfiles from scripts. Update lists of files to be ↵Allen Byrne2013-11-011-0/+17
| | | | | | | | | | | | cleaned. CMake update to clean testfiles. Tested: local cmake, autools, and h5committest
| * [svn-r24376] Updated all code to use HDmalloc, HDcalloc, and HDfree.Dana Robinson2013-10-312-12/+12
| | | | | | | | | | | | | | | | | | | | | | | | | | Prep work for adding a memory free function, part of HDFFV-8551. Tested on: 32-bit LE linux (jam) * with C++, Fortran * with thread safety on These are minor changes (almost entirely renaming foo functions to HDfoo) that don't change functionality. This should not require a full commit test.
* | [svn-r24530] Fix autotools to find/include numpy headersJerome Soumagne2013-12-111-0/+4
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* | [svn-r24493] Include ax_python_devel.m4 / add enable-python optionJerome Soumagne2013-12-031-1/+9
| | | | | | | | Add H5AS module to makefile rules
* | [svn-r24405] - Edit configure magic to pick up IOD, MDHIM, PBL, PLFS, and ↵Mohamad Chaarawi2013-11-051-0/+2
| | | | | | | | | | | | DAOS_POSIX. - fix some warnings detected on Ostrich
* | [svn-r24303] update from VOL branch that has been updated with trunk.Mohamad Chaarawi2013-10-163-4/+6
|\ \ | |/ | | | | resolve conflicts, etc..
| * [svn-r24270] checkin coverity changes from 10/4/2013.Mohamad Chaarawi2013-10-091-1/+1
| | | | | | | | tested with h5committest
| * [svn-r24194] Don't add hdf5 library dependencies to lib files when ↵Larry Knox2013-09-241-0/+1
| | | | | | | | | | | | --disable-sharedlib-rpath configure option is invoked. Fix for HDFFV-8276. Tested with h5committest and on hdf-duck.
| * [svn-r24138] Cast constants to specified type. Allen Byrne2013-09-131-3/+4
| | | | | | | | | | | | | | | | Cast smaller vars to larger type. Cast calculation result to correct type. Changed int member to hbool_t Tested: local linux
* | [svn-r24045] Merging r23841 through r24044 from VOL branch.Mohamad Chaarawi2013-08-215-1411/+1438
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| * [svn-r24030] Description:Quincey Koziol2013-08-191-26/+30
| | | | | | | | | | | | | | | | Clean up more compiler warnings. Tested on: Mac OSX/64 10.8.4 (amazon) w/gcc, C++ & FORTRAN (too minor to require h5committest)
| * [svn-r24029] Move TESTS to seperate file to allow easier editing by all ↵Allen Byrne2013-08-192-1381/+1383
| | | | | | | | | | | | developers. Tested: local linux
| * [svn-r24020] Description:Quincey Koziol2013-08-171-6/+3
| | | | | | | | | | | | | | | | Clean up compiler warnings Tested on: Mac OSX/64 10.8.4 (amazon) w/C++ & FORTRAN (too minor to require h5committest)
| * [svn-r24011] Description:Quincey Koziol2013-08-151-0/+24
| | | | | | | | | | | | | | | | Clean up a few warnings Tested on: Mac OSX 10.8.4 (amazon) w/C++ & FORTRAN (too minor to require h5committest)
| * [svn-r23917] Bug fix: HDFFV-8392Albert Cheng2013-07-182-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | tools/h5diff/testh5diff.sh is run in every "make check", even after it has passed in the previous run. The error was in the previous change made to Makefile.am when testh5diff.sh.in was created. The mistake was in the SCRIPT_DEPEND=h5diff$(EXEEXT) $(H5PDIFF) $(srcdir)/testh5diff.sh $(srcdir)/testh5diff.sh no longer existed. It is now generated in the current built directory from $(srcdir)/testh5diff.sh.in (which configure takes care of). I updated the dependance to SCRIPT_DEPEND=h5diff$(EXEEXT) $(H5PDIFF) testh5diff.sh and that fixes the error. Reviewed: HDF5-149 Tested: h5committested.
* | [svn-r23837] merge from VOL branch and add new callbacksMohamad Chaarawi2013-06-272-1/+3
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| * \ [svn-r23834] merge from trunk up to r23833.Mohamad Chaarawi2013-06-272-1/+3
| |\ \ | | |/ | | | | | | Fixed several conflicts, mostly because calling API routines internally was removed from several places in the trunk.
| | * [svn-r23811] Remove unused labelAllen Byrne2013-06-241-1/+0
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| | * [svn-r23745] HDFFV-8461: Add Windows /MT supportAllen Byrne2013-06-101-0/+3
| | | | | | | | | | | | This adds the UserMacros.cmake support needed.
* | | [svn-r23767] Update autoconf files after running reconfigure on jamJerome Soumagne2013-06-131-11/+23
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* | | [svn-r23583] update the encoding/decoding part of the IOD pluginMohamad Chaarawi2013-04-121-1/+1
| | | | | | | | | | | | | | | | | | | | | - complete overhaul to use FS proc macros - remove dead code Rename FS routines to HG and update configure magic and makefiles Many bug fixes
* | | [svn-r23490] make ph5diff tests run again after error output has been fixedMohamad Chaarawi2013-03-292-1/+2
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* | | [svn-r23489] merge VOL branch in:Mohamad Chaarawi2013-03-291-1/+4
|\ \ \ | |/ / | | | | | | | | | - resolved conflicts with the VOL callbacks changes to support better async I/O - the IOD plugin still does not leverage those changes yet
| * | [svn-r23474] Bring recent trunk changes into the VOL branch including the ↵Mohamad Chaarawi2013-03-281-1/+4
| |\ \ | | |/ | | | | | | fix to Ph5diff
| | * [svn-r23469] Description:Quincey Koziol2013-03-271-1/+4
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Change h5diff_exit() routine to always return a zero exit code when running in parallel, since returning a non-zero exit code can cause MPI implementations to print output and that can throw off our "expected output" comparisons. Note that this change only changes the exit code for situations where an incorrect command-line parameter was given - ph5diff was already returning a zero exit code for all "normal" executions, including those where a serial h5diff would return a non-zero exit code. Tested on: Mac OSX/64 10.8.3 (amazon) w/parallel (Too minor to require h5committest)
* | | [svn-r23457] add --enable-eff to configure that defaults to noMohamad Chaarawi2013-03-261-0/+1
| | | | | | | | | | | | | | | | | | | | | add HAVE_EFF build flag to indicate whether the IOD plugin should be compiled or not add an AM conditional to indicate whether the EFF test exampels should be compiled or not tested on jam
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