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* [svn-r24480] Description:Quincey Koziol2013-11-301-99/+145
| | | | | | | | | | | Bring r24479 from 1.8 branch to trunk: Fix ph5diff worker command handling so it can correctly respond to situations where there's no work to perform. Also, a few minor code cleanups. Tested on: Mac OSX/64 10.9.0 (amazon) w/parallel (too minor to require h5committest)
* [svn-r24392] Cleanup testfiles from scripts. Update lists of files to be ↵Allen Byrne2013-11-011-0/+17
| | | | | | cleaned. CMake update to clean testfiles. Tested: local cmake, autools, and h5committest
* [svn-r24376] Updated all code to use HDmalloc, HDcalloc, and HDfree.Dana Robinson2013-10-312-12/+12
| | | | | | | | | | | | | Prep work for adding a memory free function, part of HDFFV-8551. Tested on: 32-bit LE linux (jam) * with C++, Fortran * with thread safety on These are minor changes (almost entirely renaming foo functions to HDfoo) that don't change functionality. This should not require a full commit test.
* [svn-r24270] checkin coverity changes from 10/4/2013.Mohamad Chaarawi2013-10-091-1/+1
| | | | tested with h5committest
* [svn-r24194] Don't add hdf5 library dependencies to lib files when ↵Larry Knox2013-09-241-0/+1
| | | | | | --disable-sharedlib-rpath configure option is invoked. Fix for HDFFV-8276. Tested with h5committest and on hdf-duck.
* [svn-r24138] Cast constants to specified type. Allen Byrne2013-09-131-3/+4
| | | | | | | | Cast smaller vars to larger type. Cast calculation result to correct type. Changed int member to hbool_t Tested: local linux
* [svn-r24030] Description:Quincey Koziol2013-08-191-26/+30
| | | | | | | | Clean up more compiler warnings. Tested on: Mac OSX/64 10.8.4 (amazon) w/gcc, C++ & FORTRAN (too minor to require h5committest)
* [svn-r24029] Move TESTS to seperate file to allow easier editing by all ↵Allen Byrne2013-08-192-1381/+1383
| | | | | | developers. Tested: local linux
* [svn-r24020] Description:Quincey Koziol2013-08-171-6/+3
| | | | | | | | Clean up compiler warnings Tested on: Mac OSX/64 10.8.4 (amazon) w/C++ & FORTRAN (too minor to require h5committest)
* [svn-r24011] Description:Quincey Koziol2013-08-151-0/+24
| | | | | | | | Clean up a few warnings Tested on: Mac OSX 10.8.4 (amazon) w/C++ & FORTRAN (too minor to require h5committest)
* [svn-r23917] Bug fix: HDFFV-8392Albert Cheng2013-07-182-2/+2
| | | | | | | | | | | | | | | | | | | tools/h5diff/testh5diff.sh is run in every "make check", even after it has passed in the previous run. The error was in the previous change made to Makefile.am when testh5diff.sh.in was created. The mistake was in the SCRIPT_DEPEND=h5diff$(EXEEXT) $(H5PDIFF) $(srcdir)/testh5diff.sh $(srcdir)/testh5diff.sh no longer existed. It is now generated in the current built directory from $(srcdir)/testh5diff.sh.in (which configure takes care of). I updated the dependance to SCRIPT_DEPEND=h5diff$(EXEEXT) $(H5PDIFF) testh5diff.sh and that fixes the error. Reviewed: HDF5-149 Tested: h5committested.
* [svn-r23811] Remove unused labelAllen Byrne2013-06-241-1/+0
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* [svn-r23745] HDFFV-8461: Add Windows /MT supportAllen Byrne2013-06-101-0/+3
| | | | This adds the UserMacros.cmake support needed.
* [svn-r23469] Description:Quincey Koziol2013-03-271-1/+4
| | | | | | | | | | | | | | | Change h5diff_exit() routine to always return a zero exit code when running in parallel, since returning a non-zero exit code can cause MPI implementations to print output and that can throw off our "expected output" comparisons. Note that this change only changes the exit code for situations where an incorrect command-line parameter was given - ph5diff was already returning a zero exit code for all "normal" executions, including those where a serial h5diff would return a non-zero exit code. Tested on: Mac OSX/64 10.8.3 (amazon) w/parallel (Too minor to require h5committest)
* [svn-r23305] HDFFV-8257: szip still used even if headers are not found. ↵Allen Byrne2013-02-181-1/+1
| | | | | | Change configure to test the result of the CHECK HEADERS call before checking for the library. Tested: local linux, h5committest
* [svn-r23304] Purpose:Jonathan Kim2013-02-183-4/+4
| | | | | | | | | | | | HDFFV-7643 - h5diff - incorrect exit-code returns for extra attribute exist Description: h5diff: Fixed to return correct exit code 1 when detect unique attribute. Prior to this fix, h5diff returned exit code 0 indicating two files are identical. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), fred (mac64-LE), emu (solaris-BE), Windows (32-LE cmake), cmake (jam)
* [svn-r23273] HDFFV-8311: Correct test dependencyAllen Byrne2013-02-141-13/+13
| | | | Tested: local linux
* [svn-r23160] HDFFV-8227: Mac DARWIN requires CMake 2.8.10Allen Byrne2013-01-141-1/+1
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* [svn-r22908] Reverted changes in revision 22819Larry Knox2012-10-161-2/+0
| | | | Tested with h5committest on jam, koala and ostrich.
* [svn-r22819] Added H5BLD_STATIC and HDF5_USE_SHLIB to configure.ac so that ↵Larry Knox2012-09-271-0/+2
| | | | | | if configured with --disable-static the default for HDF5_USE_SHLIB in the compile scripts will be changed to yes. This is a fix for HDFFV-8141, where the compile scripts try to link to non-existant static hdf5 libraries. Tested on jam,koala,ostrich(h5committest) and other THG machines.
* [svn-r22751] Purpose:Jonathan Kim2012-09-1011-16/+12
| | | | | | | | | | | | HDFFV-5919 - GMQS: h5diff - The number of object difference is not consistent between dataset and group/type when attribute(s) have differences Description: Object differences are not consistent between dataset and group/datatype when their attribute(s) have differences. This is because attribute(s) differences is not accumulated to group or datatype object’s difference, but accumulated to dataset difference. To fix, do not accumulate attribute difference to dataset difference. This is referred to h5diff’s default behavior and also past report from users that users were confused by the accumulated behavior. (also can’t figure out only for dataset difference , also hard to spot dataset difference when it has lots of attributes or differences) This also lead to fix inconsistent format indicating difference between dataset and group/datatype object. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), cmake (jam)
* [svn-r22720] Fix RelWithDebInfo packagingAllen Byrne2012-08-281-2/+2
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* [svn-r22718] Remove unneeded srcdir testAllen Byrne2012-08-271-5/+0
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* [svn-r22710] Remove reference to srcdir in TOOL pathAllen Byrne2012-08-231-1/+1
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* [svn-r22709] HDFFV-8129: reconfigured on jam, Remove overloading of ↵Allen Byrne2012-08-234-25/+28
| | | | | | autotools TESTS var, rename configure.in to configure.ac, convert test scripts from hard *.sh to configure managed *sh.in files. Tested: h5committest
* [svn-r22706] Updated autotools: autoconf 2.69, automake 1.12.3, m4 1.4.16, ↵Larry Knox2012-08-221-38/+91
| | | | | | libtool 2.4.2 Tested THG machines.
* [svn-r22691] Purpose:Jonathan Kim2012-08-161-2/+2
| | | | | | | | | | | HDFFV-7942 - h5diff: incorrect result for comparing attribute data with different type size in same class Description: This is additional fix due to daily build fail against previous r22684. Refer to the svn -r22684 log for previous details Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), cmake (jam)
* [svn-r22684] Purpose: Jonathan Kim2012-08-155-0/+40
| | | | | | | | | | | | Address HDFFV-7942 - h5diff: incorrect result for comparing attribute data with different type size in same class Description: When comparing attribute data values with same type class but different size, the result was incorrect. It was due to the size difference and got truncated. Fixed to match up the smaller type size to big type size like what dataset does. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), cmake (jam)
* [svn-r22618] Jonathan Kim2012-08-011-8/+1
| | | | | | | | | | | | | | Purpose: HDFFV-8003 - ph5diff (parallel h5diff): daily test failure on ember intermittently during non comparable test file comparison HDFFV-7755 - parallel h5diff : hanging on koala intermittently during non comparable test file comparison Description: non-comparable test intermittently hung on koala and ember, but not on jam. it didn't occur until -np reaches 4 or bigger. it occurred once out of many repeated attempts of the same test. There was a incorrectly (mistakenly?) duplicated code in MPI section which caused such hang in a certain condition. The test used more processes than other tests, which increased chance to trigger more undone processes, and such process could enter the incorrect code section and wait for wrong pair of send. it explains why it occurred intermittently according to machine condition and using a certain feature. Removed incorrect code which blocked correct code. Tested: some manually repeated test performed jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE)
* [svn-r22617] Purpose:Jonathan Kim2012-08-011-5/+16
| | | | | | | | | | | | | | | Fix for HDFFV-8107 testh5diff will fail if build/test in HDF5 source tree Description: This is sub-task for "HDFFV-8105 testh5diff.sh uses the wrong operator (-a) in an if statement." From the HDFFV-8105's update, h5diff test failed if build&test is performed in HDF5 source tree because 'cp' try to copy test files to self dir. It's addressed by skipping if cp's src dir and dest dir is same. Also this applied for all other tools under src/tools dir. No change to the CMakeLists.txt files because CMake cautions/demands that in-source builds be avoided. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), some manual tests as well
* [svn-r22594] Bug fix: HDFFV-8105Albert Cheng2012-07-221-4/+2
| | | | | | | | | | | | | | | Description: The test command in COPY_TESTFILES_TO_TESTDIR used the wrong operator -a which means and. It is not sufficient to test mere existence as $tstfile could have been a directory or other non-file things. If the file is not readable, the $CP command would fail but its return code was not checked. Solution: Get rid of the test command and go ahead to $CP it and then check its returned code and report errors if detected. Tested; committested. (note that ostrick still failed on errors committed by other staff).
* [svn-r22479] Remove subfolder tools from install commandAllen Byrne2012-06-201-4/+4
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* [svn-r22419] Purpose:Jonathan Kim2012-05-291-271/+248
| | | | | | | | | | | | | HDFFV-7602 - GMQS: HDF5 command tools: Provide framework for reusable test files among tools Stage2 working for h5diff tool. Description: Update cmake script to fetch test files from any tools to a test directory and run test in organized manner. Also keep the apperance similiar to shell script for better maintainance. Tested: CMake (Windows and jam)
* [svn-r22405] HDFFV-8018: add INSTALL commands for packaging the pdb files ↵Allen Byrne2012-05-241-0/+6
| | | | | | for windows when configured with RelWithDebInfo Tested: local linux and Windows
* [svn-r22323] Description:Jonathan Kim2012-04-271-2/+3
| | | | | | | | | | The ph5diff (parallel h5diff) can intermittently hang in parallel mode when comparing the two HDF5 files that contains common name objects with different object types. (HDFFV-8003) Skip only the specific test for parallel until the fix has made. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE)
* [svn-r22319] Purpose:Jonathan Kim2012-04-2612-2/+116
| | | | | | | | | | | | | | Fix for HDFFV-7998-h5diff: incorrect behavior and output for comparing symbolic dangling links without following-symlinks option Description: Fix not to check and display dangling link status without --follow-symlinks option. Berfor the fix, when comparing symbolic link to symbolic link without follow-symlinks option, h5diff followed to check if those links are dangling or not. It caused to display output incorrectly (dangling link instead of symbolic link). The fix also improved performance when comparing lots of symbolic links without the --follow-symlinks option. Test cases were added and tagged with jira#. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), Cmake (jam)
* [svn-r22176] Purpose:Jonathan Kim2012-03-2816-15/+205
| | | | | | | | | | | | Fix for HDFFV-7644 GMQS: h5diff - incorrect behaviors when comparing HDF5 files with different type of objects (dataset, group, type) as common objects Description: Fixed failure for comparing same named object with different object types in comparing groups. (common object comparison) Prior to the fix, h5diff resulted in error. After the fix, h5diff detects such case as non-comparable and display messages accordingly. Test cases were added and tagged with jira#. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), Cmake (jam)
* [svn-r22170] Removed extraneous svn executable properties from ↵Dana Robinson2012-03-285-0/+0
| | | | non-executable files.
* [svn-r22136] Purpose:Jonathan Kim2012-03-231-0/+3
| | | | | | | | | | | update for HDFFV-7837 - h5diff: incorrect behavior with exclude-path option when unique object exist only in one file Description: Add the new test output list to test shell script. This is based on the previous commit r22114. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE)
* [svn-r22114] Purpose:Jonathan Kim2012-03-218-1/+162
| | | | | | | | | | | | | | | Fix for HDFFV-7837 - h5diff: incorrect behavior with exclude-path option when unique object exist only in one file Description: If unique objects exists only in one file and try to exclude the unique objects with --exclude-path option, h5diff missed excluding some objects. Fixed to exclude objects correctly in such case. Test cases were added and tagged with jira#. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), Cmake (jam)
* [svn-r22038] Purpose:Jonathan Kim2012-03-097-3/+52
| | | | | | | | | | | | | | Fix for HDFFV-7835 h5diff: incorrect result for comparing the two same type symlinks as dangling links. Description: When two symbolic dangling links are compared with --follow-symlinks option, the result should be same. It works for comparing two files, but didn't work for comparing two objects. Test cases were added and tagged with jira#. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), Cmake (jam)
* [svn-r22033] Remove unnecessary INCLUDE_DIR commandAllen Byrne2012-03-071-1/+0
| | | | Tested: local linux and windows
* [svn-r22004] Reduced warnings and fixed conflicts resulting from including ↵Allen Byrne2012-02-283-2/+5
| | | | | | h5tools.h Tested: local linux
* [svn-r21988] Tools must call h5tools_init before command_line parsing or ↵Allen Byrne2012-02-271-0/+3
| | | | | | using tools_mesg functions. Tools library uses alias variables for stdout, stderr and tools library uses HDfprintf() functions.
* [svn-r21987] Remove unnecessary dependancies on tools library for h5 file ↵Allen Byrne2012-02-272-6/+12
| | | | | | gentests. Tested: local linux
* [svn-r21985] Tools must call h5tools_init before command_line parsing or ↵Allen Byrne2012-02-241-1/+4
| | | | | | | | using tools_mesg functions. Tools library uses alais variables for stdout, stderr and tools library uses HDfprintf() functions. Tested: local linux
* [svn-r21981] Correct HD prefix in tools for fprintfAllen Byrne2012-02-241-3/+3
| | | | Checked for HD support.
* [svn-r21979] Correct HD prefix in tools for strlen and memcpyAllen Byrne2012-02-241-3/+3
| | | | Checked for HD support.
* [svn-r21974] Update HSIZE_T print statements to use correct macro.Allen Byrne2012-02-231-23/+23
| | | | | | Fix some more HD prefix issues in tools. Tested: local linux
* [svn-r21890] Purpose:Jonathan Kim2012-01-243-0/+13
| | | | | | | | | | | | | | | | | Fix for HDFFV-7836 h5diff: displays error stack message for comparing the two dangling symlink with follow-symlinks option Description: While ago, to improve performance, skipping same object checking (h5tools_is_obj_same()) was added. However the checking function doesn't understand about the dangling link and caused the issue. Since handling dangling link code section already implemented, move the checking function after handling dangling-links to address the problem. Test was added and tagged with jira#. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), Cmake (jam)
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