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* [svn-r17450] Bring h5dump single subsetting selection and region reference ↵Allen Byrne2009-09-041-94/+109
| | | | | | changes from NPOESS Tested: local linux smirom
* [svn-r17313] Description:Quincey Koziol2009-08-101-14/+12
| | | | | | | | | | | | | | | | | | | | | Bring back various minor code cleanups from the file free space branch Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.8 (amazon) in debug mode Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17075] Implemented nowrap option (Bug 811) equivalent to h5ls tool. ↵Allen Byrne2009-06-171-3/+15
| | | | | | Also updated usage output. Tested: linux
* [svn-r16669] Corrected the urls for h5dump xml dtd and schemaAllen Byrne2009-04-031-4/+4
| | | | Tested: Fedora 10 gcc
* [svn-r16489] Fixed bug #1459 by eliminating the macro long_long and ↵Allen Byrne2009-02-181-14/+14
| | | | | | | | | | | replacing all instances with long long. Tested: h5comittest fedora 10 x64 Vista 32, VS2005, IVF101 XP32, Cygwin
* [svn-r16012] Bug fixPedro Vicente Nunes2008-10-311-5/+9
| | | | | | | When -b was requested and no -o (file name) binary output was made to stdout Had a check after command line parsing to verify if -o is present, otherwise exit Tested: windows, linux
* [svn-r15992] Merge with 1.8 rev 15973Pedro Vicente Nunes2008-10-291-1/+4
| | | | | make -b accept both MEMORY and NATIVE Tested: linux
* [svn-r15991] Merge with 1.8 rev 15969Pedro Vicente Nunes2008-10-291-45/+53
| | | | | | | | | | | | | | | Introduced a new feature in the tools library regarding command line parsing In the definition of arguments, an "*" means that the switch can or can not have an optional argument. This "*" is put in the code regarding the letter definition, and it is transparent to the user (e.g b* instead of the previous b: ), where ":" notes a required argument after the letter (and no ":" or "*" notes no argument, mandatory) Used for the h5dump binary option -b It can be now 1) -b (defaults to NATIVE) 2) - b NATIVE 3) - b FILE 4) -b LE 5) -b BE Note: the keyword NATIVE replaces MEMORY This feature (-b with no argument) was tested with the sequence of h5dump to binary (NATIVE) then h5import to generate an HDF5 file from the binary file and h5diff to compare the 2 HDF5 files Tested: linux
* [svn-r15886] Purpose: Close bug 1332Neil Fortner2008-10-161-66/+328
| | | | | | | | | Description: Improved external link traversal of h5dump. h5dump will now properly avoid all cycles, even those spanning multiple files. Improvement to the output of committed datatypes. Committed datatypes are now checked for uniqueness (like other objects). Tests added for these cases. Tested: kagiso, linew, smirom (h5committest)
* [svn-r15628] Description:Quincey Koziol2008-09-161-143/+143
| | | | | | | | | | | | | Remove trailing whitespace from C/C++ source files, with the following script: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Tested on: Mac OS X/32 10.5.5 (amazon) No need for h5committest, just whitespace changes...
* [svn-r15446] bug fixPedro Vicente Nunes2008-08-071-1/+14
| | | | | | | http://bugzilla.hdfgroup.uiuc.edu/show_bug.cgi?id=788 don't print array indices for regions tested: windows, linux
* [svn-r15337] Unintended change to h5dump.c. Reverted.Neil Fortner2008-07-081-12/+8
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* [svn-r15335] Fixed incorrect error message in H5Pset_fletcher32:Neil Fortner2008-07-081-8/+12
| | | | | | | | "unable to add deflate filter to pipeline" -> "unable to add fletcher32 filter to pipeline" Tested: kagiso
* [svn-r15150] Purpose: Separate Windows function macro definitions to win32defs.hScott Wegner2008-06-051-1/+1
| | | | | | | | | | | | | | Description: In library code, we try not to use system calls directly, but instead use the HD{function} macro instead. This way, we can map special versions of the call on particular systems. Previously, it was all done in H5private.h. However, in an effort to clean up platform-specific definitions, we move all of the Windows macros into a separate file, win32defs.h. This way, we can use the non-Posix versions that Visual Studio sends warnings about. Some macros are set specifically in the platform-specific header files. Then, any macros left unset will be set by the "default" implementation in H5private.h. This checkin also cleans up various source files to use the HD* macros when possible. Tested: VS2005 on WinXP VS.NET on WinXP h5committest (kagiso, linew, smirom)
* [svn-r15143] Pedro Vicente Nunes2008-06-051-7/+12
| | | | | | | | | | Fix for #1169 http://bugzilla.hdfgroup.uiuc.edu/show_bug.cgi?id=1169 don't print attributes to stdout when doing binary output added an attribute to the file run on the binary output test tested: windows, linux
* [svn-r14977] update comments, formattingPedro Vicente Nunes2008-05-121-5/+9
| | | | tested: windows, linux
* [svn-r14976] Support for external links follow up. The format is to print ↵Pedro Vicente Nunes2008-05-121-32/+120
| | | | | | | | | | | | | | | | | | | | | | | | | | | | the target object as part of TARGETPATH, noted with some extra indentation The previous printing of LINKCLASS 64 was removed HDF5 "textlinksrc.h5" { GROUP "/" { EXTERNAL_LINK "ext_link1" { TARGETFILE "textlinktar.h5" TARGETPATH "dset" DATASET "dset" { DATATYPE H5T_STD_I32LE DATASPACE SIMPLE { ( 6 ) / ( 6 ) } DATA { (0): 1, 2, 3, 4, 5, 6 } } } } } There is no script test for this behavior so far, because test script uses complete paths that vary from test to test, making not possible to define a valid TARGETFILE in the file tested: windows, linux, solaris
* [svn-r14935] correct an error in the usage textPedro Vicente Nunes2008-05-051-1/+1
| | | | tested: windows, linux, solaris
* [svn-r14934] Add a test for the floating point user defined printf formatPedro Vicente Nunes2008-05-051-1/+17
| | | | | | | | | | | | | | | | Usage is -m T, --format=T Where T - is a string containing the floating point format, e.g '%.3f' The test consists of writing a number with 7 fractional digits (default precision display of %f is 6 digits) and have the 7 digits displayed with -m %.7f fpformat.h5 Tested: windows, linux, solaris Note: the output file was generated in linux, it may be possible that platforms other than the ones tested have a different representation of the number
* [svn-r14905] Introduced a ratio formula compression ratio = uncompressed ↵Pedro Vicente Nunes2008-05-011-7/+7
| | | | | | | | size / compressed size in the printing of the compression with 3 digits of precision per hdf-forum NASA developers suggestion tested: windows, linux, solaris
* [svn-r14903] Undoing change committed in r14902.Scot Breitenfeld2008-04-301-6/+77
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* [svn-r14902] Merged fortran_1_8 branch changes r14505:14901 into the trunk. ↵Scot Breitenfeld2008-04-301-77/+6
| | | | New fortran wrappers added.
* [svn-r14893] fix typo in commentPedro Vicente Nunes2008-04-291-1/+1
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* [svn-r14892] RFC display compression ratio in h5dumpPedro Vicente Nunes2008-04-291-6/+77
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Here's the current behavior of h5dump regarding the printing of the dataset creation property list For example ./h5dump -H -p -d filters HDF5 "tfilters.h5" { DATASET "deflate" { DATATYPE H5T_STD_I32LE DATASPACE SIMPLE { ( 20, 10 ) / ( 20, 10 ) } STORAGE_LAYOUT { CHUNKED ( 10, 5 ) SIZE 385 } FILTERS { COMPRESSION DEFLATE { LEVEL 9 } } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET VALUE 0 } ALLOCATION_TIME { H5D_ALLOC_TIME_INCR } } } The proposed behavior is to add this information after SIZE SIZE 385 (51.9%COMPRESSION) That percentage is obtained trough Per = (b-a) / a Where a = theoretical size obtained by multiplying datum size times number of elements b = size obtained with H5Dget_storage_size The final print would look like HDF5 "tfilters.h5" { DATASET "deflate" { DATATYPE H5T_STD_I32LE DATASPACE SIMPLE { ( 20, 10 ) / ( 20, 10 ) } STORAGE_LAYOUT { CHUNKED ( 10, 5 ) SIZE 385 (51.9%COMPRESSION) } FILTERS { COMPRESSION DEFLATE { LEVEL 9 } } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET VALUE 0 } ALLOCATION_TIME { H5D_ALLOC_TIME_INCR } } } tested: windows, linux, solaris
* [svn-r14437] bug fix for h5dump subsetting (deal with blocks)and new test runsPedro Vicente Nunes2008-01-161-0/+34
| | | | | | | | | | | | | | | | | | | | | | | | | add a check for block overlap after the command line parsing * Algorithm * * In a inner loop, the parameters from SSET are translated into temporary * variables so that 1 row is printed at a time (getting the coordinate indices * at each row). * We define the stride, count and block to be 1 in the row dimension to achieve * this and advance until all points are printed. * An outer loop for cases where dimensionality is greater than 2D is made. * In each iteration, the 2D block is displayed in the inner loop. The remaining * slower dimensions above the first 2 are incremented one at a time in the outer loop * * The element position is obtained from the matrix according to: * Given an index I(z,y,x) its position from the beginning of an array * of sizes A(size_z, size_y,size_x) is given by * Position of I(z,y,x) = index_z * size_y * size_x * + index_y * size_x * + index_x * tested: windows, linux
* [svn-r14339] bug fix: aligned a line in usage that was not alignedPedro Vicente Nunes2007-12-121-1/+1
| | | | tested: linux
* [svn-r14324] bug fix: #786 (E3) h5dump refers to the user block as "boot block"Pedro Vicente Nunes2007-12-061-4/+4
| | | | | | replaced usage message with "super block" tested: linux
* [svn-r14284] Description:Quincey Koziol2007-11-241-6/+4
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Add H5Lvisit_by_name() API routine to library. Eliminated all (five!) other group traversal routines and changed them all to use the new API routine. Cleaned up output of h5ls & h5stat: - Issue error when requesting recursive traversal of a file with the "group info" flag, but no group given - Print info about root group in all(?) appropriate situations - Don't print "verbose" information about root group until the root group is in the list of objects to display (mostly because h5ls & h5stat had a different twist on traversing the groups in a file that the other utilities) Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r14266] enhancement: format usage messagePedro Vicente Nunes2007-11-191-1/+2
| | | | tested: linux
* [svn-r14229] Description:Quincey Koziol2007-11-011-1/+1
| | | | | | | | | | | | | | | | | | | Change H5O[gs]et_comment to H5O[gs]et_comment_by_name and re-add simpler forms of H5O[gs]et_comment. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r14225] Description:Quincey Koziol2007-10-311-7/+7
| | | | | | | | | | | | | | | | | | | Change H5Oget_info -> H5Oget_info_by_name and re-add H5Oget_info in a simpler form for querying a particular object, to align with other new API routines. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14224] Description:Quincey Koziol2007-10-301-8/+8
| | | | | | | | | | | | | | | | | | | Change H5Literate -> H5Literate_by_name and add simpler form of H5Literate, to bring this routine into alignment with the other new API routines. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14220] Description:Quincey Koziol2007-10-301-21/+21
| | | | | | | | | | | | | | | | | | | | Change H5Aiterate2 -> H5Aiterate_by_name to be more consistent with other new API routine names Re-add H5Aiterate2, to operate on a particular object Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14217] Description:Quincey Koziol2007-10-301-3/+3
| | | | | | | | | | | | | | | | | | | | | Change H5Aopen -> H5Aopen_by_name, in order to be more consistent with other new API routines. Re-add H5Aopen as a simpler routine, to open attributes on a particular object. (Much like the old H5Aopen_name routine). Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14212] Description:Quincey Koziol2007-10-181-2/+2
| | | | | | | | | | | | | | | | | | | | | | Make H5Tarray_create() and H5Tget_array_dims() versioned, and drop the "perm" parameter from the '2' versions. Shift internal library usage to '2' versions. Add simple regression tests for '1' versions. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14206] Description:Quincey Koziol2007-10-171-13/+2
| | | | | | | | | | | | | | | | | | | | Make H5Pget_filter API versioned and switch internal usage to H5Pget_filter2. Add regression test for H5Pget_filter1. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14197] added attribute iteration orders to the XML codePedro Vicente Nunes2007-10-091-9/+69
| | | | tested: linux
* [svn-r14196] cleaned a few linux warningsPedro Vicente Nunes2007-10-091-17/+7
| | | | tested: linux
* [svn-r14195] Pedro Vicente Nunes2007-10-091-6/+37
| | | | | | added attribute iteration orders for named datatypes current behavior: if there is a request to do H5_INDEX_CRT_ORDER and tracking order is set in the named datatype's creation property list for attributes, then, sort by creation order, otherwise by name
* [svn-r14194] added attribute iteration orders for datasetsPedro Vicente Nunes2007-10-091-6/+34
| | | | | current behavior: if there is a request to do H5_INDEX_CRT_ORDER and tracking order is set in the dataset's creation property list for attributes, then, sort by creation order, otherwise by name
* [svn-r14193] Description:Quincey Koziol2007-10-081-28/+21
| | | | | | | | | | | | | | | | | | | Make H5Dopen versioned and change all internal usage to use H5Dopen2 Add simple regression test for H5Dopen1 Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14190] Pedro Vicente Nunes2007-10-061-136/+90
| | | | | | | Bug fixes Avoid passing iteration flags on the dump_group function parameters but instead inspect the groups's property list just before calling H5Literate and H5Aiterate, in this later case checking the creation order flags with H5Pget_attr_creation_order Tested: windows, linux
* [svn-r14186] Added support for displaying several iteration orders on group ↵Pedro Vicente Nunes2007-10-041-38/+56
| | | | | | and named datatype attributes tested: windows, linux
* [svn-r14185] Description:Quincey Koziol2007-10-041-3/+3
| | | | | | | | | | | | | | | | | | | | | Move H5Aopen_name() routine to deprecated symbol section and replace internal usage with H5Aopen(). Add simple regression test for H5Aopen_name() to deprecated routine test. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14182] Pedro Vicente Nunes2007-10-041-17/+21
| | | | | | | Added support for displaying several iteration orders on dataset attributes, 4 new tests in test script (name ascending, name descending, creation_order ascending, creation_order descending) New h5 file is made on the generator program Tested: windows, linux
* [svn-r14180] Description:Quincey Koziol2007-10-041-12/+14
| | | | | | | | | | | | | | | | | | | Make H5Aiterate() versioned and change all internal use to H5Aiterate2() Leave some regression tests that exercise H5Aiterate1() Fix attribute display in h5dump & h5ls to be "by name" by default Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14174] new h5dump usage to include -q and -zPedro Vicente Nunes2007-10-021-6/+10
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | tested: windows, linux, solaris 5.10 usage: h5dump [OPTIONS] file OPTIONS -h, --help Print a usage message and exit -n, --contents Print a list of the file contents and exit -B, --bootblock Print the content of the boot block -H, --header Print the header only; no data is displayed -A, --onlyattr Print the header and value of attributes -i, --object-ids Print the object ids -r, --string Print 1-byte integer datasets as ASCII -e, --escape Escape non printing characters -V, --version Print version number and exit -a P, --attribute=P Print the specified attribute -d P, --dataset=P Print the specified dataset -y, --noindex Do not print array indices with the data -p, --properties Print dataset filters, storage layout and fill value -f D, --filedriver=D Specify which driver to open the file with -g P, --group=P Print the specified group and all members -l P, --soft-link=P Print the value(s) of the specified soft link -o F, --output=F Output raw data into file F -b B, --binary=B Binary file output, of form B -t P, --datatype=P Print the specified named datatype -w N, --width=N Set the number of columns of output -q Q, --sort_by=Q Sort groups and attributes by index Q -z Z, --sort_order=Z Sort groups and attributes by order Z -x, --xml Output in XML using Schema -u, --use-dtd Output in XML using DTD -D U, --xml-dtd=U Use the DTD or schema at U -X S, --xml-ns=S (XML Schema) Use qualified names n the XML ":": no namespace, default: "hdf5:" E.g., to dump a file called `-f', use h5dump -- -f Subsetting is available by using the following options with a dataset attribute. Subsetting is done by selecting a hyperslab from the data. Thus, the options mirror those for performing a hyperslab selection. The START and COUNT parameters are mandatory if you do subsetting. The STRIDE and BLOCK parameters are optional and will default to 1 in each dimension. -s L, --start=L Offset of start of subsetting selection -S L, --stride=L Hyperslab stride -c L, --count=L Number of blocks to include in selection -k L, --block=L Size of block in hyperslab D - is the file driver to use in opening the file. Acceptable values are "sec2", "family", "split", "multi", "direct", and "stream". Without the file driver flag, the file will be opened with each driver in turn and in the order specified above until one driver succeeds in opening the file. F - is a filename. P - is the full path from the root group to the object. N - is an integer greater than 1. L - is a list of integers the number of which are equal to the number of dimensions in the dataspace being queried U - is a URI reference (as defined in [IETF RFC 2396], updated by [IETF RFC 2732]) B - is the form of binary output: MEMORY for a memory type, FILE for the file type, LE or BE for pre-existing little or big endian types. Must be used with -o (output file) and it is recommended that -d (dataset) is used Q - is the sort index type. It can be "creation_order" or "name" (default) Z - is the sort order type. It can be "descending" or "ascending" (default) Examples: 1) Attribute foo of the group /bar_none in file quux.h5 h5dump -a /bar_none/foo quux.h5 2) Selecting a subset from dataset /foo in file quux.h5 h5dump -d /foo -s "0,1" -S "1,1" -c "2,3" -k "2,2" quux.h5 3) Saving dataset 'dset' in file quux.h5 to binary file 'out.bin' using a litt le-endian type h5dump -d /dset -b LE -o out.bin quux.h5
* [svn-r14171] Pedro Vicente Nunes2007-10-021-1/+0
| | | | | | | | bug fix: the new option --sort_by clashes with the existing abreviated form of soft-link "so" solution: eliminate the form "so" tested: windows, linux
* [svn-r14168] bug fix:Pedro Vicente Nunes2007-10-021-37/+31
| | | | | | | | groups and creation order: if there is a request to do H5_INDEX_CRT_ORDER and this flag is set in the group, then, sort by creation order, otherwise by name tested: windows, linux
* [svn-r14167] Pedro Vicente Nunes2007-10-011-33/+145
| | | | | | | | | | | | Added 2 new switch flags for sort parameters of groups. -q sort_by [creation_order | name] -z sort_order [ascending | descending ] Added extra parameter to dump_group of type H5_iter_order_t to control the iteration order, to be passed to H5Literate. Note : code under development, tests not added yet and flags NOT added to usage Tested : windows, linux
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