| Commit message (Collapse) | Author | Age | Files | Lines |
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Clean up some "WANT_H5_V1_4_COMPAT" #ifdefs that somehow survived this
far...
Tested on:
FreeBSD/32 6.2 (duty)
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Move H5Gget_objinfo() to deprecated symbols section and retarget
internal usage to H5Lget_info()/H5Oget_info().
Misc. other code cleanups...
Tested on:
FreeBSD/32 6.2 (duty)
FreeBSD/64 6.2 (liberty)
Linux/32 2.6 (kagiso)
Linux/64 2.6 (smirom)
AIX/32 5.3 (copper)
Solaris/32 2.10 (linew)
Mac OS X/32 10.4.10 (amazon)
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Move H5Gget_num_objs() and several minor macros, etc. to deprecated
symbols section, replacing it with H5Gget_info().
Tested on:
FreeBSD/32 6.2 (duty)
FreeBSD/64 6.2 (liberty)
Linux/32 2.6 (kagiso)
Linux/64 2.6 (smirom)
AIX/32 5.3 (copper)
Solaris/32 5.10 (linew)
Mac OS X/32 10.4.10 (amazon)
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Move H5Giterate() and H5G_iterate_t to deprecated symbols section,
replacing them with H5Literate and H5L_iterate_t respectively.
Tested on:
FreeBSD/32 6.2 (duty)
FreeBSD/64 6.2 (liberty)
Linux/32 2.6 (kagiso)
Linux/64 2.6 (smirom)
AIX/32 5.3 (copper)
Solaris/32 5.10 (linew)
Mac OS X/32 10.4.10 (amazon)
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Add H5O{set|get}_comment routines, which were overlooked before.
Move H5G{set|get}_comment routines to deprecated code section,
replacing internal calls with H5O{set|get}_comment.
Tested on:
FreeBSD/32 6.2 (duty)
FreeBSD/64 6.2 (liberty)
Linux/32 2.6 (kagiso)
Linux/64 2.6 (smirom)
Solaris/32 5.10 (linew)
AIX/32 5.3 (copper)
Mac OS X/32 10.4.10 (amazon)
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Move H5Gunlink to deprecated symbol section, replacing internal calls
with H5Ldelete.
Tested on:
FreeBSD/32 6.2 (duty)
FreeBSD/64 6.2 (liberty)
Linux/32 2.6 (kagiso)
Linux/64 2.6 (smirom)
Solaris/32 5.10 (linew)
Mac OS X/32 10.4.10 (amazon)
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Move H5Glink() into "deprecated routines" section, replacing internal
usage with H5Lcreate_hard/H5Lcreate_soft.
Tested on:
FreeBSD/32 6.2 (duty)
FreeBSD/64 6.2 (liberty)
Solaris/32 5.10 (linew)
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Fix error in end_obj() macro to make it safer in situations without
enclosing braces.
Tested on:
Mac OS X/32 10.4.10 (amazon)
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Remove all plain calls to H5Gopen() from source, replacing them with
either H5Gopen2().
Add test for H5Gopen1().
Reformatted several pieces of code, to clean them up.
Tested on:
FreeBSD/32 6.2 (duty)
FreeBSD/64 6.2 (liberty)
Linux/32 2.6 (kagiso)
Linux/64 2.6 (smirom)
Solaris/32 5.10 (linew)
Mac OS X/32 10.4.10 (amazon)
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Pursue calls to H5Gcreate() relentlessly and ruthlessly exterminate
them, leaving only a few tame specimens in text files and comments. ;-)
Tested on:
Mac OS X/32 10.4.10 (amazon)
FreeBSD/32 6.2 (duty)
FreeBSD/64 6.2 (liberty)
Linux/32 2.6 (kagiso)
Linux/64 2.6 (smirom)
Solaris/32 5.10 (linew)
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Add --with-default-api-version configure flag.
Tested on:
Mac OS X/32 10.4.10 (amazon)
FreeBSD/32 6.2 (duty)
Linux/32 2.6 (kagiso)
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Add --enable-deprecated-symbols configure option, to allow users to
remove deprecated public API symbols at configure time.
Add bin/make_vers script to bin/reconfigure actions.
Run bin/reconfigure to regenerate autotool components.
Tested on:
Mac OS X/32 10.4.10 (amazon)
FreeBSD/32 6.2 (duty)
Linux/32 2.6 (kagiso)
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Make h5dump more gracious and informative about objects it doesn't
understand.
Tested on:
Mac OS X/32 10.4.10 (amazon)
No need for h5committest - very minor
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src/H5pubconf.h file.
2) Removing configuration of c++/src/H5cxx_pubconf.h file.
Reasoning: the additional pubconf file caused compilation complications, this is cleaner.
Tested: kagiso, smirom
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Description: added new configuration to generate a pubconf file
in the c++/src directory, H5cxx_pubconf.h. When C++
compiler recognizes 'offsetof', the macro
H5_CXX_HAVE_OFFSETOF is defined in the new
pubconf file.
tested: kagiso, smirom
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Bug fix.
Description:
The "h5dump -o ..." test generates temporay files in the testfiles of the
source code and later on remove them. This could cuase a racing condition
if more than one --srcdir build is using the same copy of the source code.
Since they use the same file name in the testfiles, they may conflict with
each other.
Solution:
Changed to generate the temporary files in the build-dir's own testfiles
directory. Since the build-dir can have different names, the CMP of expected
output now skip the first three lines which are label lines that contains
the location of the temporary.
Also removed the CREATE code since actual files created now cannot be
blindly copied to the expect files. Also, expected files should be
create by explicit action and careful inspection of files generated.
Tested platform:
Done in kagiso, both by --src-dir and in-place build.
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Changed macro names, conflict with new compiler
-- changed DATASET to H5_TOOLS_DATASET
-- changed DATATYPE to H5_TOOLS _DATATYPE
-- changed GROUP to H5_TOOLS_GROUP
In mingw's version of winsock2.h they define:
typedef unsigned int GROUP;
remove STORAGELAYOUT macro, it was not used
tested: linux
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DEFAULT_VFD).
Description: Changes made during this checkin need to be greatly
modified, so I'm removing them now rather than leaving them
in and fixing them later.
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Formatting cleanups
Tested on:
FreeBSD/32 6.2 (duty)
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test/Makefile.
Description: a new configure flag has been created that will now set a macro
in the test/Makefile. The flag is with-default-vfd=. When set to
a virtual file driver (e.g. "--with-default-vfd=sec2"), the macro
DEFAULT_VFD will hold this value.
Tested: kagiso, smirom, linew
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doesn't return correct
file size from MPI_File_get_size. Bypass this problem by replacing it with
stat. Add an option --disable-mpi-size in configure to indicate this function
doesn't work properly. Add a test in testpar/t_mpi.c, too. If it returns wrong
file size, print out a warning.
Tested on kagiso (parallel) because already tested the same change to v1.6 on
several platforms (kagiso, cobalt, copper, and sol).
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Regenerate configuration files after latest checkin
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Early detection of no arguments, print usage and exit
Tested: linux
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Modified the current h5dump test script to use h5import/h5diff calls to validate the binary output. At this moment it can only be used with the native test, since h5import does not deal with input endianess.
tested: linux, sunos 5.10
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WIN32, so I've standardized all #ifdef's to use _WIN32. This should not affect any other platform.
Tested:
Visual Studio (32- and 64-bit) on Win XP
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Bug fix
The parsing routine -b was not correctly affecting one of the variables that sets the binary output
Tested linux
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Rename new error handling API routines from H5E<foo>_stack() to
H5E<foo>2().
Tested on:
Mac OS X/32 10.4.9 (amazon)
FreeBSD/32 6.2 (duty)
FreeBSD/64 6.2 (liberty)
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most recent versions of the autotools.
Updated autotool versions are: autoconf 2.61, automake 1.10.0, and libtool 1.5.22.
Tested on kagiso.
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Add version # and flags to external link format (as fields in a single
byte), in order to accomodate future changes/expansions.
Tested on:
Mac OS X/32 10.4.9 (amazon)
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
FreeBSD/32 6.2 (duty)
FreeBSD/64 6.2 (liberty)
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make 1.7 files similar to 1.6
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make comments equal in 1.6 and 1.7
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Preparation for making 1.6 and 1.7 h5dump more similar and 1.6 to have 1.7 fixed bugs incorporated
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some comments in the
template file config/Makefile.am.blank.
This is just a cleanup checkin. Tested on kagiso.
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bin/makehelp (formatting
the output in the makefile was pretty hard).
Tested that make still works on kagiso; no code changes at all.
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Description: Multiple copies of Copyright appeared in Makefile.in. This was
due to automake copying the copyright right in the included files such as
config/commence.am.
Solution: Automake treats double hashes as comments and does not copy them
to Makefile.in. Changed all the copyright notices in config/*.am to use
double hashes for the Copyright right notice.
Tested: kagiso via bin/reconfigure.
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Dependency line
in the Makefile.
Makefile change only. Tested on kagiso, to be used to test on cobalt.
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Add small 'h5mkgrp' tool to create groups in an HDF5 file from the command
line, allowing the group structure for a file to be created in a script. This
tool closely follows the 'mkdir' command line tool in UNIX/Linux.
Allow tool library applications to pass a FAPL to the h5tool_fopen() call,
giving some additional flexibility to tools which are adding objects to an
existing HDF5 file (like h5copy & h5mkgrp).
Fix missing files in MANIFEST from previous checkin(s).
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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temporary fix for a daily test failure
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Add feature to h5copy to allow it to add an object to an existing file,
instead of blowing away existing file.
Modify h5tools_fopen() routine to take access flags, so it can be used
to open an existing file for writing.
Added check to h5copy test script that verifies it has produced a file
with the correct structure.
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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replaced a dataset type from H5T_NATIVE_CHAR to H5T_NATIVE_SCHAR
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remove a test that was incorrectly added previously, that was not the feature that had to be tested
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added a test for the printing of long long numbers greater than 4GB
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2 tests that were previously incorporated inside the array indices test file were separated from it. These are a test with a dataset with dimensions greater tan 4GB and a test to read by hyperslabs
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Ran reconfigure to generate the Makefile.in files.
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Tested: visual inspection as they are all just comments.
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copyright notice.
Tested platform:
Kagiso only since it is only a comment block change. If it works in one
machine, it should work in all, I hope. Still need to check the parallel
build on copper.
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It seems that while Cygwin supports the time command, it has trouble with
the syntax
srcdir="../../hdf5/test" time ./testhdf5
and complains.
The solution is to test the above case in configure and not to use the time
command if it fails; Cygwin is fine with
srcdir="../../hdf5/test" ./testhdf5
Tested on Cygwin and kagiso. This feature shouldn't be a major compatibility
problem since every platform but Cygwin is already fine with the current
syntax.
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replaced the path to XML schema from NCSA page to hdfgroup.org
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The problem
came from the EOA for the whole MULTI file. It's taken out because it's
meaningless for MULTI file. Instead, each individual file has its EOA.
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New version of the function h5tools_dump_simple_subset, to display subsetting. The new algorithm is:
Introduced an outer loop for cases where dimensionality is greater
than 2D. In each iteration a 2D block is displayed by rows in a inner
loop. The remainning slower dimensions above the first 2 are incremented
one at a time in the outer loop
Note: when blocks are introduced, the display is not correct. This is a bug that requires an improvement of the algorithm.
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