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* [svn-r26781] Merge revisions 26305 through 26780 from trunk to vds branch.Neil Fortner2015-04-1013-253/+116
|\ | | | | | | Tested: ummon
| * [svn-r26750] HDFFV-8667: h5repack crashes on enumerated 8-bit type nested in ↵Albert Cheng2015-04-072-6/+0
| | | | | | | | | | | | | | | | | | compound type. Added the testing to h5repack where it belongs. Undo the tests added to h5dump. Tested: h5committested plus tested in jam by hand.
| * [svn-r26721] Disable failing testAllen Byrne2015-04-031-1/+1
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| * [svn-r26711] Recommitting revisions 26669 and 26670, removing VPATH and ↵Larry Knox2015-04-021-1/+0
| | | | | | | | | | | | | | | | redundant /usr/include and lib in fcompile and link flags checks, now that I have run reconfigure. Also changed paths to h5cc, etc. in scripts to run installed examples from relative paths to absolute paths. Tested with h5committest.
| * [svn-r26702] HDFFV-8667: h5repack crashes on enumerated 8-bit type nested in ↵Albert Cheng2015-04-011-3/+16
| | | | | | | | | | | | | | | | | | | | | | | | | | compound type. Description: The test added failed in some machines because the data file contains infinity values that different machines print them differently as "inf", "INF", "Inf", ... Solution: Added a "ignorecase" option to TOOLTEST() to do caseless matching between generated output vs expected output. This solved most machines problem for now. Tested: h5committest, emu by hand for both development and production modes. But cmake built h5dump failed to read the data file. Using the same source to build h5dump by autotools produced a h5dump that can read the test data file. Don't know why cmake could not produce a correct binary.
| * [svn-r26699] Generators are only built staticAllen Byrne2015-04-011-2/+2
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| * [svn-r26693] Remove use of obsolete HDF5_USE_FILTER_{internal}Allen Byrne2015-04-011-10/+2
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| * [svn-r26683] Remove internal filter checksAllen Byrne2015-03-311-12/+4
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| * [svn-r26682] Add new test from test scriptAllen Byrne2015-03-311-0/+3
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| * [svn-r26677] HDFFV-8957: h52gif crashes when run against one of our own ↵Albert Cheng2015-03-311-0/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | examples The tool claimed it could handle 24bit images but there was no code to handle it. (or might be there were but was removed by previous revisions.) Also discovered that it does not accept multiple images nor -p for palette as its user document and online help message indicated. Solution: Added code to verify dimension sizes are within 8 bit raster images limit and added tests to verify the tools correctness. Need to update user document tool. Tested: h5committested.
| * [svn-r26670] Remove VPATH and LONE_COLONLarry Knox2015-03-312-19/+1
| | | | | | | | Tested with h5committest
| * [svn-r26660] HDFFV-9131: autotols reworkAllen Byrne2015-03-301-2/+0
| | | | | | | | | | | | | | Remove CXX_CONDITIONAL remove unneeded/obsolete sections. h5commtitest
| * [svn-r26649] squish warnings.Mohamad Chaarawi2015-03-301-35/+31
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| * [svn-r26594] Merge macros and fortran changes from dual_binary feature.Allen Byrne2015-03-251-2/+2
| | | | | | | | Tested: local linux
| * [svn-r26509] Run reconfigure after merges from autotools_rework branch.Jerome Soumagne2015-03-201-2/+0
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| * [svn-r26438] Fixed some double promotion warnings from gcc 4.9.2. Most were inDana Robinson2015-03-111-1/+1
| | | | | | | | | | | | format strings. Tested on: h5committest
| * [svn-r26380] Recapture updated error files for h5dump testsAllen Byrne2015-03-063-105/+21
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| * [svn-r26333] Eliminates gcc warnings due to -Wunsuffixed-float-constants.Dana Robinson2015-03-011-37/+37
| | | | | | | | | | | | | | | | | | | | | | | | - Adds 'F' suffixes for most float constants. - A few constants MUST be of type double. These now receive the long double L suffix and are then cast to double. I do this via a new H5_DOUBLE() macro which was added to H5private.h. Fixes: HDFFV-9148 Tested on: h5committest
| * [svn-r26329] Merge of r26069, r26070, and r26072 from the ↵Dana Robinson2015-02-274-28/+5
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | features/autotools_rework branch. Removed the configure option that allows selective disabling of individual internal filters (fletcher32, shuffle, etc.). This feature mucked up the code with a lot of #ifdefs, saved very little space, and was not scalable to a general scheme for library size reduction. We've decided to remove the feature while we investigate a more general scheme for decreasing the library size. Part of: HDFFV-9086 Tested on: h5committest
* | [svn-r26775] Update error file with new item.Allen Byrne2015-04-093-18/+27
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* [svn-r26303] remove files with .clog2 extension generated by MPE when doing ↵Mohamad Chaarawi2015-02-251-2/+2
| | | | make clean.
* [svn-r26208] Update cmake minimumsAllen Byrne2015-02-181-1/+1
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* [svn-r26188] Merged autotools fixes into the trunk:Scot Breitenfeld2015-02-161-1/+2
| | | | HDFFV-9089, HDFFV-9091, HDFFV-9092, HDFFV-9094, HDFFV-9095
* [svn-r26180] merge configure fixes for HDFFV-9068,9069,9096,9097,9135 from ↵Mohamad Chaarawi2015-02-161-1/+0
| | | | | | | | | | | | autotools_rework branch: - Remove Infering parallel compilers (C and Fortran) from configure.ac - Remove restriction to build shared with parallel - Cleanup parallel sections in configure.ac - remove large file support checks - MPE fixes. tested with h5committest.
* [svn-r25904] Fix CMP0054 warningAllen Byrne2014-12-191-2/+2
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* [svn-r25744] Add bitfield and opague datatype file for tests.Allen Byrne2014-10-272-0/+160
| | | | Tested: local linux
* [svn-r25570] UNDO:Added option to build tools static when building shared ↵Allen Byrne2014-09-031-7/+2
| | | | | | | | libraries. This will prevent 'dll' being appended to the tool name on windows. See HDFFV-8292. Windows DLL linkage problem because of defines needed. Tested: local linux
* [svn-r25569] Added option to build tools static when building shared ↵Allen Byrne2014-09-031-2/+7
| | | | | | libraries. This will prevent 'dll' being appended to the tool name on windows. See HDFFV-8292. Tested: local linux
* [svn-r25496] Description:Quincey Koziol2014-07-302-15/+15
| | | | | | | | | Merge 64-bit ID changes from branch to trunk. (Plus a few minor cleanups that aren't on the branch) Tested on: Mac OSX/64 10.9.4 (amazon) w/C++ & FORTRAN (h5committested on branch already for a week)
* [svn-r25397] - remove configure checks for MPI_File_get_size and BigMohamad Chaarawi2014-07-071-1/+0
| | | | | MPI_File_set_size as they are supported by most MPI implementations. - fix bug in t_mpi.c (HDFFV-8856)
* [svn-r25188] Implement change to cmake_ext_mod config folderAllen Byrne2014-05-143-11/+11
| | | | Tested: local linux
* [svn-r25185] update cmake command name caseAllen Byrne2014-05-121-3/+3
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* [svn-r25117] Removed LT_ADD_LIBHDF5_DEPENDENCY configure conditional to roll ↵Larry Knox2014-04-251-1/+0
| | | | | | | | | | | back fix for removing rpaths from l ib files. The fix also removed dependencies on libhdf5, etc. when the --disable-sharedlib-rpath co nfigure option was invoked. Added instead configure variable hardcode_into_lib=no. This removes rpath from lib files on Linux and solaris machines. Tested with h5committest on jam, koala, ostrich and platypus (cmake), and with configure option --disable-sharedlib-rpath on emu, platypus and quail.
* [svn-r25113] Fixed Subversion EOL and executable attributes. No code changes.Dana Robinson2014-04-251-3/+3
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* [svn-r24948] Group tests by Common nameAllen Byrne2014-04-021-6/+6
| | | | | | Remove WIN32 AND NOT CYGWIN if blocks - should be just WIN32 Tested: local linux CMake
* [svn-r24937] Adds an H5free_memory() function to the library for use withDana Robinson2014-03-311-4/+5
| | | | | | | | | | | | functions that return library-allocated memory. The test and tool code were modified to use this new function where it's appropriate. Fixes HDFFV-7710, HDFFV-8519, and HDFFV-8551 Tested on: 64-bit Windows 7 w/ VS2012 32-bit LE linux w/ parallel and fortran (jam) 32-bit LE linux w/ fortran and C++ (jam)
* [svn-r24932] HDFFV-8290: Remove unnecessary $(srcdir) and use AM_CPPFLAGS ↵Allen Byrne2014-03-312-76/+467
| | | | | | instead of INCLUDES. Update automake to 1.14.1 h5committest
* [svn-r24869] Description:Quincey Koziol2014-03-231-2/+1
| | | | | | | | | | | | | | | | | | | | | | | | | Clean up more compiler warnings, plus merge a few Coverity bug fixes from the hdf5_1_8_coverity branch back to the trunk: r20877: Purpose: Fix coverity issue 1723 Description: Modified test_generate in hl/test_image to close file "f" before exit, even if an error occurs. r20879: Issue 63: change check of return of H5Tget_nmembers to <=0. No need to go futher if call fails as well as empty. r20881: Coverity #659 in Run 46: I changed the Line 442 where it tries to check whether FLAG_PRINTED is TRUE. But it had just been set to FALSE. I took out the condition check in the print statement. Tested on: Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & Parallel (too minor to require h5committest)
* [svn-r24864] Description:Quincey Koziol2014-03-212-22/+12
| | | | | | | | | | | | | | | | | | Remove all traces of MPI-POSIX VFD and GPFS detection/code. Remove remaining traces of stream VFD. Remove testpar/t_posix_compliant test (it's not actually verifying anything). Clean up H5D__mpio_opt_possible() further. Moved environment variable that disables MPI collective operations into MPI-IO VFD (instead of it being in src/H5S.c). A few other small code cleanups. Tested on: Mac OSX/64 10.9.2 (amazon) w/parallel & serial
* [svn-r24824] HDFFV-8700 -Allen Byrne2014-03-181-5/+5
| | | | | | | | KitWare recommendations: Change CMake commands to lower case. Bump up CMake minimum versions. Split test file into separate file for h5repack test. Tested: local linux
* [svn-r24789] Bump up the minimum cmake versionAllen Byrne2014-03-131-1/+1
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* [svn-r24782] HDFFV-8700 -Allen Byrne2014-03-114-106/+106
| | | | KitWare recommendations: Change CMake commands to lower case.
* [svn-r24781] HDFFV-8700 -Allen Byrne2014-03-114-188/+188
| | | | | | | KitWare recommendations: Change CMake commands to lower case. Remove INCLUDE_DIRECTORIES in src for target level includes. Change ADD_DEFINITIONS package debug defines into CMake option. Remove -DNDEBUG
* [svn-r24726] Description:Quincey Koziol2014-02-201-55/+55
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Revert some earlier usage of strncpy, which was incorrect. Bring Coverity changes from branch back to trunk: r20821: Use HDstrncpy. --gh (Fixed already, with strdup) r20822: (Not merged, incorrect use of HDstrncpy()) r20823: (Not merged, incorrect use of HDstrncpy()) r20824: Maintenance: Bug fix: addressed CID 666. Value stored at *expression_len should be used in the call to HD5packFstring to avoid overflow (and unnecessary arithmetic calculation and casting) r20825: Issue 642: Added check for error and handler with print to stderr and exit. r20826: Undo revision 20818, as that issue has already been fixed in the 1.8 branch and trunk (but not coverity branch) r20827: (Not merged, incorrect use of HDstrncpy()) r20828: Use HDstrncpy. --gh (Corrected use of strncpy()) r20829: Check return of H5Lget_val(print_udata->fid, path, targbuf, linfo->u.val_size + 1, H5P_DEFAULT) and if error set trgbuf[0] to 0. Check if H5Lunpack_elink_val(targbuf, linfo->u.val_size, NULL, &filename, &objname) was successful and allow print. Otherwise filename and objname are not created. (init those to NULL) r20830: resolved coverity issues 939, 940, 941, 944, and 947. all were complaints about use of sprintf, and in all cases, the buffers used were large enough for all eventualities. Resolved issue by replacing calls to sprintf with calls to snprintf. r20831: Maintenance: Addressed CID 852 Replaced sprintf with snprintf r20832: Purpose: Fix valgrind issues with hl/examples/ex_image2 Description: Modified hl/examples/ex_image2 to free global "gbuf" before exit. Tested on: Mac OSX/64 10.9.1 (amaon) w/C++, FORTRAN & Threadsafety (too minor to require h5committest)
* [svn-r24482] HDFFV-8635: remove test of whole file and just test dsets that ↵Allen Byrne2013-12-023-67/+5
| | | | | | have szip compression. Tested local linux with cmake and autotools
* [svn-r24481] HDFFV-8635: disable test because of szip causing different read ↵Allen Byrne2013-12-021-4/+5
| | | | call then expected.
* [svn-r24471] JAVA-1798: Add the testfiles for hdf-java and the h5dump tests ↵Allen Byrne2013-11-274-21/+672
| | | | | | including the test to read filter data. Tested: cmake and autotools - local linux
* [svn-r24411] Correct file generationAllen Byrne2013-11-071-10/+21
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* [svn-r24408] Add compound integer tests filesAllen Byrne2013-11-062-0/+500
| | | | Tested: local linux cmake
* [svn-r24392] Cleanup testfiles from scripts. Update lists of files to be ↵Allen Byrne2013-11-013-2/+48
| | | | | | cleaned. CMake update to clean testfiles. Tested: local cmake, autools, and h5committest
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