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* [svn-r14902] Merged fortran_1_8 branch changes r14505:14901 into the trunk. ↵Scot Breitenfeld2008-04-303-86/+38
| | | | New fortran wrappers added.
* [svn-r14893] fix typo in commentPedro Vicente Nunes2008-04-291-1/+1
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* [svn-r14892] RFC display compression ratio in h5dumpPedro Vicente Nunes2008-04-291-6/+77
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Here's the current behavior of h5dump regarding the printing of the dataset creation property list For example ./h5dump -H -p -d filters HDF5 "tfilters.h5" { DATASET "deflate" { DATATYPE H5T_STD_I32LE DATASPACE SIMPLE { ( 20, 10 ) / ( 20, 10 ) } STORAGE_LAYOUT { CHUNKED ( 10, 5 ) SIZE 385 } FILTERS { COMPRESSION DEFLATE { LEVEL 9 } } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET VALUE 0 } ALLOCATION_TIME { H5D_ALLOC_TIME_INCR } } } The proposed behavior is to add this information after SIZE SIZE 385 (51.9%COMPRESSION) That percentage is obtained trough Per = (b-a) / a Where a = theoretical size obtained by multiplying datum size times number of elements b = size obtained with H5Dget_storage_size The final print would look like HDF5 "tfilters.h5" { DATASET "deflate" { DATATYPE H5T_STD_I32LE DATASPACE SIMPLE { ( 20, 10 ) / ( 20, 10 ) } STORAGE_LAYOUT { CHUNKED ( 10, 5 ) SIZE 385 (51.9%COMPRESSION) } FILTERS { COMPRESSION DEFLATE { LEVEL 9 } } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET VALUE 0 } ALLOCATION_TIME { H5D_ALLOC_TIME_INCR } } } tested: windows, linux, solaris
* [svn-r14792] bug fix: #1106 h5dump -b will dump ASCII values for datasets ↵Pedro Vicente Nunes2008-04-031-30/+8
| | | | | | after the first one. One variable that controls the binary output was incorrectly reset to zero after a binary output was done a first time. The effect was that on cases of several datasets, the ones after the first were not binary written. Eliminated the resetting of that variable and tested a file with several datasets. Modified the test file so that it is easier to test with the tool binread, that reads the binary output of h5dump. tested: windows, linux
* [svn-r14716] remove a commented test call that was calling for an invalid ↵Pedro Vicente Nunes2008-03-101-2/+1
| | | | | | block selection tested: linux
* [svn-r14437] bug fix for h5dump subsetting (deal with blocks)and new test runsPedro Vicente Nunes2008-01-162-5/+39
| | | | | | | | | | | | | | | | | | | | | | | | | add a check for block overlap after the command line parsing * Algorithm * * In a inner loop, the parameters from SSET are translated into temporary * variables so that 1 row is printed at a time (getting the coordinate indices * at each row). * We define the stride, count and block to be 1 in the row dimension to achieve * this and advance until all points are printed. * An outer loop for cases where dimensionality is greater than 2D is made. * In each iteration, the 2D block is displayed in the inner loop. The remaining * slower dimensions above the first 2 are incremented one at a time in the outer loop * * The element position is obtained from the matrix according to: * Given an index I(z,y,x) its position from the beginning of an array * of sizes A(size_z, size_y,size_x) is given by * Position of I(z,y,x) = index_z * size_y * size_x * + index_y * size_x * + index_x * tested: windows, linux
* [svn-r14420] Description:Quincey Koziol2008-01-151-1/+1
| | | | | | | | Correct the prototype for H5Sselect_elements() to take an 'hsize_t *' for the coordinates, instead of 'hsize_t **'. Tested on: Mac OS X/32 10.5.1 (amazon)
* [svn-r14414] revert the subsetting calls of h5dump to 1 size block, still a ↵Pedro Vicente Nunes2008-01-151-2/+2
| | | | | | bug with size > 1 tested: linux
* [svn-r14412] more progress on the block hyperslab bug, clean code Pedro Vicente Nunes2008-01-141-1/+1
| | | | | | modified the 3D test case for subsetting with block and stride factors tested: windows, linux
* [svn-r14411] more progress on the block hyperslab bug, clean code Pedro Vicente Nunes2008-01-141-1/+1
| | | | | | | modified the 2D test case for subsetting with block and stride factors tested: windows, linux
* [svn-r14409] more progress on the block hyperslab bug, clean code Pedro Vicente Nunes2008-01-141-2/+9
| | | | | | modified the 1D test case for subsetting with block and stride factors tested: windows, linux
* [svn-r14402] Description:Quincey Koziol2008-01-131-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Add work-around to allow reading files that were produced with a buggy earlier version of the library, which could create objects with the wrong object header message count. There is now a configure flag "--enable-strict-format-checks" which triggers a failure on reading a file with this sort of corruption (when enabled) and allows the object to be read (when disabled). The default value for the "strict-format-checks" flag is yes when the "debug" flag is enabled and no when the "debug" flag is disabled. Note that if strict format checks are disabled (allowing objects with this particular kind of corruption to be read) and the file is opened with write access, the library will re-write the object header for the corrupt object with the correct # of object header messages. This closes bugzilla bug #1010. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r14339] bug fix: aligned a line in usage that was not alignedPedro Vicente Nunes2007-12-121-1/+1
| | | | tested: linux
* [svn-r14324] bug fix: #786 (E3) h5dump refers to the user block as "boot block"Pedro Vicente Nunes2007-12-061-4/+4
| | | | | | replaced usage message with "super block" tested: linux
* [svn-r14284] Description:Quincey Koziol2007-11-241-6/+4
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Add H5Lvisit_by_name() API routine to library. Eliminated all (five!) other group traversal routines and changed them all to use the new API routine. Cleaned up output of h5ls & h5stat: - Issue error when requesting recursive traversal of a file with the "group info" flag, but no group given - Print info about root group in all(?) appropriate situations - Don't print "verbose" information about root group until the root group is in the list of objects to display (mostly because h5ls & h5stat had a different twist on traversing the groups in a file that the other utilities) Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r14266] enhancement: format usage messagePedro Vicente Nunes2007-11-191-1/+2
| | | | tested: linux
* [svn-r14229] Description:Quincey Koziol2007-11-012-19/+19
| | | | | | | | | | | | | | | | | | | Change H5O[gs]et_comment to H5O[gs]et_comment_by_name and re-add simpler forms of H5O[gs]et_comment. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r14225] Description:Quincey Koziol2007-10-311-7/+7
| | | | | | | | | | | | | | | | | | | Change H5Oget_info -> H5Oget_info_by_name and re-add H5Oget_info in a simpler form for querying a particular object, to align with other new API routines. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14224] Description:Quincey Koziol2007-10-301-8/+8
| | | | | | | | | | | | | | | | | | | Change H5Literate -> H5Literate_by_name and add simpler form of H5Literate, to bring this routine into alignment with the other new API routines. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14220] Description:Quincey Koziol2007-10-301-21/+21
| | | | | | | | | | | | | | | | | | | | Change H5Aiterate2 -> H5Aiterate_by_name to be more consistent with other new API routine names Re-add H5Aiterate2, to operate on a particular object Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14218] Description:Quincey Koziol2007-10-301-30/+30
| | | | | | | | | | | | | | | | | | | | | Changed H5Acreate2 -> H5Acreate_by_name, to be more consistent with other new API routines. Re-added simpler form of H5Acreate2, which creates attributes directly on an object. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14217] Description:Quincey Koziol2007-10-301-3/+3
| | | | | | | | | | | | | | | | | | | | | Change H5Aopen -> H5Aopen_by_name, in order to be more consistent with other new API routines. Re-add H5Aopen as a simpler routine, to open attributes on a particular object. (Much like the old H5Aopen_name routine). Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14212] Description:Quincey Koziol2007-10-182-57/+55
| | | | | | | | | | | | | | | | | | | | | | Make H5Tarray_create() and H5Tget_array_dims() versioned, and drop the "perm" parameter from the '2' versions. Shift internal library usage to '2' versions. Add simple regression tests for '1' versions. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14208] Description:Quincey Koziol2007-10-181-10/+6
| | | | | | | | | | | | | | | | | | | | Make H5Pget_filter_by_id() API versioned and switch internal usage to H5Pget_filter_by_id2(). Add simple regression test for H5Pget_filter_by_id1(). Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14206] Description:Quincey Koziol2007-10-171-13/+2
| | | | | | | | | | | | | | | | | | | | Make H5Pget_filter API versioned and switch internal usage to H5Pget_filter2. Add regression test for H5Pget_filter1. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14201] attribute ordering: added objects that do not have creation ↵Pedro Vicente Nunes2007-10-111-7/+83
| | | | | | | | | | order tracked current behavior is if DCPL has creation order tracked for attributes then sort the attributes by creation order otherwise by name regarding sort order (ascending or descending) it is done in whatever is requested tested: linux
* [svn-r14200] added tests for XML output of attribute iteration orders (same ↵Pedro Vicente Nunes2007-10-111-0/+9
| | | | | | calls as DDL ) tested: linux
* [svn-r14199] Description:Quincey Koziol2007-10-111-789/+787
| | | | | | | | | | | | | | | | | | | | | Add H5Dcreate to API versioned routines, replacing internal usage with H5Dcreate2 Fix thread-safe error stack initialization for API versioned error stack printing routines. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14197] added attribute iteration orders to the XML codePedro Vicente Nunes2007-10-091-9/+69
| | | | tested: linux
* [svn-r14196] cleaned a few linux warningsPedro Vicente Nunes2007-10-091-17/+7
| | | | tested: linux
* [svn-r14195] Pedro Vicente Nunes2007-10-091-6/+37
| | | | | | added attribute iteration orders for named datatypes current behavior: if there is a request to do H5_INDEX_CRT_ORDER and tracking order is set in the named datatype's creation property list for attributes, then, sort by creation order, otherwise by name
* [svn-r14194] added attribute iteration orders for datasetsPedro Vicente Nunes2007-10-091-6/+34
| | | | | current behavior: if there is a request to do H5_INDEX_CRT_ORDER and tracking order is set in the dataset's creation property list for attributes, then, sort by creation order, otherwise by name
* [svn-r14193] Description:Quincey Koziol2007-10-081-28/+21
| | | | | | | | | | | | | | | | | | | Make H5Dopen versioned and change all internal usage to use H5Dopen2 Add simple regression test for H5Dopen1 Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14190] Pedro Vicente Nunes2007-10-062-137/+117
| | | | | | | Bug fixes Avoid passing iteration flags on the dump_group function parameters but instead inspect the groups's property list just before calling H5Literate and H5Aiterate, in this later case checking the creation order flags with H5Pget_attr_creation_order Tested: windows, linux
* [svn-r14188] added a named datatype with attributes to the h5 file that ↵Pedro Vicente Nunes2007-10-052-17/+62
| | | | | | shows attributes with several iteration orders tested: windows, linux
* [svn-r14187] Description:Quincey Koziol2007-10-041-93/+91
| | | | | | | | | | | | | | | | | | | | Put H5Acreate() under API versioning, with all internal usage shifted to H5Acreate2(). Add regression tests for H5Acreate1(). Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14186] Added support for displaying several iteration orders on group ↵Pedro Vicente Nunes2007-10-042-42/+88
| | | | | | and named datatype attributes tested: windows, linux
* [svn-r14185] Description:Quincey Koziol2007-10-041-3/+3
| | | | | | | | | | | | | | | | | | | | | Move H5Aopen_name() routine to deprecated symbol section and replace internal usage with H5Aopen(). Add simple regression test for H5Aopen_name() to deprecated routine test. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14182] Pedro Vicente Nunes2007-10-043-26/+125
| | | | | | | Added support for displaying several iteration orders on dataset attributes, 4 new tests in test script (name ascending, name descending, creation_order ascending, creation_order descending) New h5 file is made on the generator program Tested: windows, linux
* [svn-r14180] Description:Quincey Koziol2007-10-041-12/+14
| | | | | | | | | | | | | | | | | | | Make H5Aiterate() versioned and change all internal use to H5Aiterate2() Leave some regression tests that exercise H5Aiterate1() Fix attribute display in h5dump & h5ls to be "by name" by default Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14178] code cleaning:Pedro Vicente Nunes2007-10-021-62/+0
| | | | | removed one unused function tested: linux
* [svn-r14177] bug fix: Pedro Vicente Nunes2007-10-021-6/+6
| | | | | uncomment code that cleans output files, that was accidently left commented tested: linux
* [svn-r14174] new h5dump usage to include -q and -zPedro Vicente Nunes2007-10-021-6/+10
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | tested: windows, linux, solaris 5.10 usage: h5dump [OPTIONS] file OPTIONS -h, --help Print a usage message and exit -n, --contents Print a list of the file contents and exit -B, --bootblock Print the content of the boot block -H, --header Print the header only; no data is displayed -A, --onlyattr Print the header and value of attributes -i, --object-ids Print the object ids -r, --string Print 1-byte integer datasets as ASCII -e, --escape Escape non printing characters -V, --version Print version number and exit -a P, --attribute=P Print the specified attribute -d P, --dataset=P Print the specified dataset -y, --noindex Do not print array indices with the data -p, --properties Print dataset filters, storage layout and fill value -f D, --filedriver=D Specify which driver to open the file with -g P, --group=P Print the specified group and all members -l P, --soft-link=P Print the value(s) of the specified soft link -o F, --output=F Output raw data into file F -b B, --binary=B Binary file output, of form B -t P, --datatype=P Print the specified named datatype -w N, --width=N Set the number of columns of output -q Q, --sort_by=Q Sort groups and attributes by index Q -z Z, --sort_order=Z Sort groups and attributes by order Z -x, --xml Output in XML using Schema -u, --use-dtd Output in XML using DTD -D U, --xml-dtd=U Use the DTD or schema at U -X S, --xml-ns=S (XML Schema) Use qualified names n the XML ":": no namespace, default: "hdf5:" E.g., to dump a file called `-f', use h5dump -- -f Subsetting is available by using the following options with a dataset attribute. Subsetting is done by selecting a hyperslab from the data. Thus, the options mirror those for performing a hyperslab selection. The START and COUNT parameters are mandatory if you do subsetting. The STRIDE and BLOCK parameters are optional and will default to 1 in each dimension. -s L, --start=L Offset of start of subsetting selection -S L, --stride=L Hyperslab stride -c L, --count=L Number of blocks to include in selection -k L, --block=L Size of block in hyperslab D - is the file driver to use in opening the file. Acceptable values are "sec2", "family", "split", "multi", "direct", and "stream". Without the file driver flag, the file will be opened with each driver in turn and in the order specified above until one driver succeeds in opening the file. F - is a filename. P - is the full path from the root group to the object. N - is an integer greater than 1. L - is a list of integers the number of which are equal to the number of dimensions in the dataspace being queried U - is a URI reference (as defined in [IETF RFC 2396], updated by [IETF RFC 2732]) B - is the form of binary output: MEMORY for a memory type, FILE for the file type, LE or BE for pre-existing little or big endian types. Must be used with -o (output file) and it is recommended that -d (dataset) is used Q - is the sort index type. It can be "creation_order" or "name" (default) Z - is the sort order type. It can be "descending" or "ascending" (default) Examples: 1) Attribute foo of the group /bar_none in file quux.h5 h5dump -a /bar_none/foo quux.h5 2) Selecting a subset from dataset /foo in file quux.h5 h5dump -d /foo -s "0,1" -S "1,1" -c "2,3" -k "2,2" quux.h5 3) Saving dataset 'dset' in file quux.h5 to binary file 'out.bin' using a litt le-endian type h5dump -d /dset -b LE -o out.bin quux.h5
* [svn-r14173] Pedro Vicente Nunes2007-10-021-4/+43
| | | | | | | | | | | | | | | | | | | bug fix the binary option expects a full path in -o TOOLTEST tbin1.ddl -d integer -o $TESTDIR/out1.bin -b LE tbinary.h5 and it prints it in the expected output , making it absolutely not portable Solution: made a special macro function TOOLTEST1 identical to TOOLTEST except that it does not print the Expected output header ############################# Expected output for 'h5dump -d integer -o /home/pvn/kagiso/build_hdf5/tools/h5dump/../testfiles/out1.bin -b LE tbinary.h5' ############################# Tested : linux
* [svn-r14172] Pedro Vicente Nunes2007-10-021-22/+30
| | | | | | | | | 1) added 5 new tests for the group creation order 2) modified the h5dump test script to automatically generated non existing (new) output files 3) cleaning of unused DDL files 4) new modified DDL files include tcomp-3.ddl ( new form of named datatype) and the binary output files tested : linux
* [svn-r14171] Pedro Vicente Nunes2007-10-021-1/+0
| | | | | | | | bug fix: the new option --sort_by clashes with the existing abreviated form of soft-link "so" solution: eliminate the form "so" tested: windows, linux
* [svn-r14168] bug fix:Pedro Vicente Nunes2007-10-021-37/+31
| | | | | | | | groups and creation order: if there is a request to do H5_INDEX_CRT_ORDER and this flag is set in the group, then, sort by creation order, otherwise by name tested: windows, linux
* [svn-r14167] Pedro Vicente Nunes2007-10-011-33/+145
| | | | | | | | | | | | Added 2 new switch flags for sort parameters of groups. -q sort_by [creation_order | name] -z sort_order [ascending | descending ] Added extra parameter to dump_group of type H5_iter_order_t to control the iteration order, to be passed to H5Literate. Note : code under development, tests not added yet and flags NOT added to usage Tested : windows, linux
* [svn-r14164] Pedro Vicente Nunes2007-10-012-53/+386
| | | | | | | | | | | | | | | first batch for displaying groups in creation order 1) Added extra parameter to dump_group of type H5_index_t , to be passed to H5Literate. When a group is tried to be displayed, an inquiry of its creation properties is made. If H5P_CRT_ORDER_TRACKED is present on the group property list then the display is made by creation order, otherwise it is made by name 2) Added a new file to h5dumpgentest that generates a file with a hierarchy of groups with creation order on and off in alternately Note : XML code was not modified Tested : windows, linux
* [svn-r14160] Description:Quincey Koziol2007-09-271-9/+9
| | | | | | | | | | | | | | | | Make H5Topen versioned, and add regression test for H5Topen1. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode AIX/32 5.3 (copper) w/FORTRAN, w/parallel, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
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