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* [svn-r25496] Description:Quincey Koziol2014-07-302-15/+15
| | | | | | | | | Merge 64-bit ID changes from branch to trunk. (Plus a few minor cleanups that aren't on the branch) Tested on: Mac OSX/64 10.9.4 (amazon) w/C++ & FORTRAN (h5committested on branch already for a week)
* [svn-r25397] - remove configure checks for MPI_File_get_size and BigMohamad Chaarawi2014-07-071-1/+0
| | | | | MPI_File_set_size as they are supported by most MPI implementations. - fix bug in t_mpi.c (HDFFV-8856)
* [svn-r25188] Implement change to cmake_ext_mod config folderAllen Byrne2014-05-143-11/+11
| | | | Tested: local linux
* [svn-r25185] update cmake command name caseAllen Byrne2014-05-121-3/+3
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* [svn-r25117] Removed LT_ADD_LIBHDF5_DEPENDENCY configure conditional to roll ↵Larry Knox2014-04-251-1/+0
| | | | | | | | | | | back fix for removing rpaths from l ib files. The fix also removed dependencies on libhdf5, etc. when the --disable-sharedlib-rpath co nfigure option was invoked. Added instead configure variable hardcode_into_lib=no. This removes rpath from lib files on Linux and solaris machines. Tested with h5committest on jam, koala, ostrich and platypus (cmake), and with configure option --disable-sharedlib-rpath on emu, platypus and quail.
* [svn-r25113] Fixed Subversion EOL and executable attributes. No code changes.Dana Robinson2014-04-251-3/+3
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* [svn-r24948] Group tests by Common nameAllen Byrne2014-04-021-6/+6
| | | | | | Remove WIN32 AND NOT CYGWIN if blocks - should be just WIN32 Tested: local linux CMake
* [svn-r24937] Adds an H5free_memory() function to the library for use withDana Robinson2014-03-311-4/+5
| | | | | | | | | | | | functions that return library-allocated memory. The test and tool code were modified to use this new function where it's appropriate. Fixes HDFFV-7710, HDFFV-8519, and HDFFV-8551 Tested on: 64-bit Windows 7 w/ VS2012 32-bit LE linux w/ parallel and fortran (jam) 32-bit LE linux w/ fortran and C++ (jam)
* [svn-r24932] HDFFV-8290: Remove unnecessary $(srcdir) and use AM_CPPFLAGS ↵Allen Byrne2014-03-312-76/+467
| | | | | | instead of INCLUDES. Update automake to 1.14.1 h5committest
* [svn-r24869] Description:Quincey Koziol2014-03-231-2/+1
| | | | | | | | | | | | | | | | | | | | | | | | | Clean up more compiler warnings, plus merge a few Coverity bug fixes from the hdf5_1_8_coverity branch back to the trunk: r20877: Purpose: Fix coverity issue 1723 Description: Modified test_generate in hl/test_image to close file "f" before exit, even if an error occurs. r20879: Issue 63: change check of return of H5Tget_nmembers to <=0. No need to go futher if call fails as well as empty. r20881: Coverity #659 in Run 46: I changed the Line 442 where it tries to check whether FLAG_PRINTED is TRUE. But it had just been set to FALSE. I took out the condition check in the print statement. Tested on: Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & Parallel (too minor to require h5committest)
* [svn-r24864] Description:Quincey Koziol2014-03-212-22/+12
| | | | | | | | | | | | | | | | | | Remove all traces of MPI-POSIX VFD and GPFS detection/code. Remove remaining traces of stream VFD. Remove testpar/t_posix_compliant test (it's not actually verifying anything). Clean up H5D__mpio_opt_possible() further. Moved environment variable that disables MPI collective operations into MPI-IO VFD (instead of it being in src/H5S.c). A few other small code cleanups. Tested on: Mac OSX/64 10.9.2 (amazon) w/parallel & serial
* [svn-r24824] HDFFV-8700 -Allen Byrne2014-03-181-5/+5
| | | | | | | | KitWare recommendations: Change CMake commands to lower case. Bump up CMake minimum versions. Split test file into separate file for h5repack test. Tested: local linux
* [svn-r24789] Bump up the minimum cmake versionAllen Byrne2014-03-131-1/+1
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* [svn-r24782] HDFFV-8700 -Allen Byrne2014-03-114-106/+106
| | | | KitWare recommendations: Change CMake commands to lower case.
* [svn-r24781] HDFFV-8700 -Allen Byrne2014-03-114-188/+188
| | | | | | | KitWare recommendations: Change CMake commands to lower case. Remove INCLUDE_DIRECTORIES in src for target level includes. Change ADD_DEFINITIONS package debug defines into CMake option. Remove -DNDEBUG
* [svn-r24726] Description:Quincey Koziol2014-02-201-55/+55
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Revert some earlier usage of strncpy, which was incorrect. Bring Coverity changes from branch back to trunk: r20821: Use HDstrncpy. --gh (Fixed already, with strdup) r20822: (Not merged, incorrect use of HDstrncpy()) r20823: (Not merged, incorrect use of HDstrncpy()) r20824: Maintenance: Bug fix: addressed CID 666. Value stored at *expression_len should be used in the call to HD5packFstring to avoid overflow (and unnecessary arithmetic calculation and casting) r20825: Issue 642: Added check for error and handler with print to stderr and exit. r20826: Undo revision 20818, as that issue has already been fixed in the 1.8 branch and trunk (but not coverity branch) r20827: (Not merged, incorrect use of HDstrncpy()) r20828: Use HDstrncpy. --gh (Corrected use of strncpy()) r20829: Check return of H5Lget_val(print_udata->fid, path, targbuf, linfo->u.val_size + 1, H5P_DEFAULT) and if error set trgbuf[0] to 0. Check if H5Lunpack_elink_val(targbuf, linfo->u.val_size, NULL, &filename, &objname) was successful and allow print. Otherwise filename and objname are not created. (init those to NULL) r20830: resolved coverity issues 939, 940, 941, 944, and 947. all were complaints about use of sprintf, and in all cases, the buffers used were large enough for all eventualities. Resolved issue by replacing calls to sprintf with calls to snprintf. r20831: Maintenance: Addressed CID 852 Replaced sprintf with snprintf r20832: Purpose: Fix valgrind issues with hl/examples/ex_image2 Description: Modified hl/examples/ex_image2 to free global "gbuf" before exit. Tested on: Mac OSX/64 10.9.1 (amaon) w/C++, FORTRAN & Threadsafety (too minor to require h5committest)
* [svn-r24482] HDFFV-8635: remove test of whole file and just test dsets that ↵Allen Byrne2013-12-023-67/+5
| | | | | | have szip compression. Tested local linux with cmake and autotools
* [svn-r24481] HDFFV-8635: disable test because of szip causing different read ↵Allen Byrne2013-12-021-4/+5
| | | | call then expected.
* [svn-r24471] JAVA-1798: Add the testfiles for hdf-java and the h5dump tests ↵Allen Byrne2013-11-274-21/+672
| | | | | | including the test to read filter data. Tested: cmake and autotools - local linux
* [svn-r24411] Correct file generationAllen Byrne2013-11-071-10/+21
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* [svn-r24408] Add compound integer tests filesAllen Byrne2013-11-062-0/+500
| | | | Tested: local linux cmake
* [svn-r24392] Cleanup testfiles from scripts. Update lists of files to be ↵Allen Byrne2013-11-013-2/+48
| | | | | | cleaned. CMake update to clean testfiles. Tested: local cmake, autools, and h5committest
* [svn-r24194] Don't add hdf5 library dependencies to lib files when ↵Larry Knox2013-09-241-0/+1
| | | | | | --disable-sharedlib-rpath configure option is invoked. Fix for HDFFV-8276. Tested with h5committest and on hdf-duck.
* [svn-r24172] Position trunk/1.8 vars in similar location for comparison.Allen Byrne2013-09-191-3/+3
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* [svn-r24167] HDFFV-8513, HDFFV-8522 Plugin testing in h5repack, h5dump.Allen Byrne2013-09-191-0/+3
| | | | | | | Add more usage info for UserMacros. Add new option information about the Plugin default path. Tested: local linux, jam
* [svn-r24115] Reduce warnings for conversions of different widths.Larry Knox2013-09-062-472/+472
| | | | h5committested on jam, ostrich, koala, and platypus.
* [svn-r24104] HDFFV-8345: add User Defined filters to h5repack.Allen Byrne2013-09-061-1/+35
| | | | | | Reviewed in H5T-61 Tested: local linux - cmake and autotools
* [svn-r24101] Description:Quincey Koziol2013-09-052-7/+7
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Clean up warnings, enable new compiler warning flag(s) and bring back changes from Coverity branch: r20813: Remove the dead code as listed for coverity bug #1722. h5committested. r20814: Issue 69: Check return value and throw error if negative return. Also free datatype id on error r20815: Use HDstrncpy. --gh r20816: Replaced one last HDstrcat call with HDstrncat to resolve coverity issue 832. r20817: Use HDstrncpy and HDstrncat. --gh r20818: Purpose: Fix valgrind issues with h5jam Description: Modified h5jam to free strings strdup'd in parse_command_line before exit. Note that they may still not be freed in case of error, due to the widespread use of exit(). r20819: Issue 80: change loop to use int as loop index. r20820: Maintenance: Fixed the bug found by coverity CID 788 There were two problems with this function: 1) it tried to unnecessary free NULL pointer 2) it tried to allocate c_name buffer that is done by H5Pget_class_name Tested on: Mac OSX 10.8.4 (amazon) w/gcc 4.8.1, C++ & FORTRAN (too minor to require h5committest)
* [svn-r24058] Coorect usage text wrt dataset subsettingAllen Byrne2013-08-221-1/+1
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* [svn-r24057] Add --superblock long name to parser and add tests for both ↵Allen Byrne2013-08-223-0/+13
| | | | | | --boot-block and --superblock. Tested: local linux
* [svn-r24030] Description:Quincey Koziol2013-08-193-85/+86
| | | | | | | | Clean up more compiler warnings. Tested on: Mac OSX/64 10.8.4 (amazon) w/gcc, C++ & FORTRAN (too minor to require h5committest)
* [svn-r24029] Move TESTS to seperate file to allow easier editing by all ↵Allen Byrne2013-08-194-2138/+2179
| | | | | | developers. Tested: local linux
* [svn-r24022] any_object option should be any_pathAllen Byrne2013-08-193-5/+5
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* [svn-r24020] Description:Quincey Koziol2013-08-174-15/+19
| | | | | | | | Clean up compiler warnings Tested on: Mac OSX/64 10.8.4 (amazon) w/C++ & FORTRAN (too minor to require h5committest)
* [svn-r24002] Fix 32-bit and valgrind issues with new handle_paths code - ↵Allen Byrne2013-08-131-1/+1
| | | | | | correct math of adding a NULL to a string. Tested: local linux (valgrind) and h5committest
* [svn-r23999] Move declaration to top of block - fix for windows.Allen Byrne2013-08-131-1/+1
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* [svn-r23996] HDFFV-7989: Add any_path option to search the file for paths. ↵Allen Byrne2013-08-125-2/+281
| | | | | | New test added, scripts updated, help text updated. Tested: local linux
* [svn-r23994] Correct printf % handlingAllen Byrne2013-08-121-1/+1
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* [svn-r23991] Reorder groupingAllen Byrne2013-08-121-23/+23
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* [svn-r23960] HDFFV-8490: Reorder and group h5dump help text.Allen Byrne2013-08-011-32/+37
| | | | Tested: local linux
* [svn-r23953] Update stream handling to allow binary mode - due to unjam fix.Allen Byrne2013-07-311-1/+1
| | | | Tested: local linux
* [svn-r23944] Move stream functions into tools lib.Allen Byrne2013-07-301-171/+5
| | | | Tested: local linux
* [svn-r23862] Change printfs in perform output and h5dump to prevent overflow.Mohamad Chaarawi2013-07-031-2/+2
| | | | | | This fixes: https://jira.hdfgroup.uiuc.edu/browse/HDFFV-8450 Tested on Jam.
* [svn-r23830] HDFFV-8476: Add the optional arg to the help usage text.Allen Byrne2013-06-261-5/+1
| | | | Tested: local linux
* [svn-r23829] HDFFV-8134: allow exclusion of attributes. This implements the ↵Allen Byrne2013-06-267-17/+62
| | | | | | technique and creates a test. Help changes will be added after trunk tests pass the test cycle. Tested: local linux
* [svn-r23825] Bug HDFFV-8469: C++ comments in C code.Albert Cheng2013-06-261-2/+0
| | | | | | | | Found and removed two more "//" comments. Tested: in Koala by $ env CFLAGS="-ansi" ../hdf5/bin/buildhdf5 -fortran -cxx -config # enable fortran and cxx, configure only $ make AM_CFLAGS=-ansi # compile all source file by setting HDF5 build CFLAGS as "-ansi" only
* [svn-r23819] Change name of generated file in test to use the macro based ↵Allen Byrne2013-06-251-8/+2
| | | | | | removal line. Tested: local linux
* [svn-r23798] HDFFV-8465: dtd reference incorrect. Fixed loading of xml files ↵Allen Byrne2013-06-201-2/+2
| | | | | | with respect to XSD file. Tested: local linux
* [svn-r23745] HDFFV-8461: Add Windows /MT supportAllen Byrne2013-06-101-0/+2
| | | | This adds the UserMacros.cmake support needed.
* [svn-r23740] HDFFV-8447: subsetting broke data output file option.Allen Byrne2013-06-072-1/+10
| | | | Reviewed in H5T-59, tested local linux
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