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* [svn-r13972] Description:Quincey Koziol2007-07-131-0/+1
| | | | | | | | | Add --with-default-api-version configure flag. Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty) Linux/32 2.6 (kagiso)
* [svn-r13971] Description:Quincey Koziol2007-07-121-0/+1
| | | | | | | | | | | | | | Add --enable-deprecated-symbols configure option, to allow users to remove deprecated public API symbols at configure time. Add bin/make_vers script to bin/reconfigure actions. Run bin/reconfigure to regenerate autotool components. Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty) Linux/32 2.6 (kagiso)
* [svn-r13948] Description:Quincey Koziol2007-07-051-1/+1
| | | | | | | | | Make h5dump more gracious and informative about objects it doesn't understand. Tested on: Mac OS X/32 10.4.10 (amazon) No need for h5committest - very minor
* [svn-r13928] Purpose: 1) Moving H5_CXX_HAVE_OFFSETOF macro to ↵Mike McGreevy2007-06-291-3/+2
| | | | | | | | | | src/H5pubconf.h file. 2) Removing configuration of c++/src/H5cxx_pubconf.h file. Reasoning: the additional pubconf file caused compilation complications, this is cleaner. Tested: kagiso, smirom
* [svn-r13925] Purpose: intermediate checkin for offsetof fix for PGI compiler.Mike McGreevy2007-06-281-2/+3
| | | | | | | | | | Description: added new configuration to generate a pubconf file in the c++/src directory, H5cxx_pubconf.h. When C++ compiler recognizes 'offsetof', the macro H5_CXX_HAVE_OFFSETOF is defined in the new pubconf file. tested: kagiso, smirom
* [svn-r13905] Purpose:Albert Cheng2007-06-251-43/+45
| | | | | | | | | | | | | | | | | | | | | | | | Bug fix. Description: The "h5dump -o ..." test generates temporay files in the testfiles of the source code and later on remove them. This could cuase a racing condition if more than one --srcdir build is using the same copy of the source code. Since they use the same file name in the testfiles, they may conflict with each other. Solution: Changed to generate the temporary files in the build-dir's own testfiles directory. Since the build-dir can have different names, the CMP of expected output now skip the first three lines which are label lines that contains the location of the temporary. Also removed the CREATE code since actual files created now cannot be blindly copied to the expect files. Also, expected files should be create by explicit action and careful inspection of files generated. Tested platform: Done in kagiso, both by --src-dir and in-place build.
* [svn-r13874] Pedro Vicente Nunes2007-06-182-4/+3
| | | | | | | | | | | | | | | | | Changed macro names, conflict with new compiler -- changed DATASET to H5_TOOLS_DATASET -- changed DATATYPE to H5_TOOLS _DATATYPE -- changed GROUP to H5_TOOLS_GROUP In mingw's version of winsock2.h they define: typedef unsigned int GROUP; remove STORAGELAYOUT macro, it was not used tested: linux
* [svn-r13846] Purpose: To remove changes from version #13839 (regarding ↵Mike McGreevy2007-06-081-1/+0
| | | | | | | | DEFAULT_VFD). Description: Changes made during this checkin need to be greatly modified, so I'm removing them now rather than leaving them in and fixing them later.
* [svn-r13845] Description:Quincey Koziol2007-06-081-31/+32
| | | | | | | Formatting cleanups Tested on: FreeBSD/32 6.2 (duty)
* [svn-r13839] Purpose: creation of a DEFAULT_VFD macro in the ↵Mike McGreevy2007-06-071-0/+1
| | | | | | | | | | | test/Makefile. Description: a new configure flag has been created that will now set a macro in the test/Makefile. The flag is with-default-vfd=. When set to a virtual file driver (e.g. "--with-default-vfd=sec2"), the macro DEFAULT_VFD will hold this value. Tested: kagiso, smirom, linew
* [svn-r13829] Some systems (only SGI Altix ProPack 4 discovered so far) ↵Raymond Lu2007-06-021-0/+1
| | | | | | | | | | | | doesn't return correct file size from MPI_File_get_size. Bypass this problem by replacing it with stat. Add an option --disable-mpi-size in configure to indicate this function doesn't work properly. Add a test in testpar/t_mpi.c, too. If it returns wrong file size, print out a warning. Tested on kagiso (parallel) because already tested the same change to v1.6 on several platforms (kagiso, cobalt, copper, and sol).
* [svn-r13815] Description:Quincey Koziol2007-05-291-0/+2
| | | | Regenerate configuration files after latest checkin
* [svn-r13805] Pedro Vicente Nunes2007-05-241-0/+6
| | | | | | Early detection of no arguments, print usage and exit Tested: linux
* [svn-r13775] Pedro Vicente Nunes2007-05-211-10/+92
| | | | | | | Modified the current h5dump test script to use h5import/h5diff calls to validate the binary output. At this moment it can only be used with the native test, since h5import does not deal with input endianess. tested: linux, sunos 5.10
* [svn-r13766] In Visual Studio 2005 for 64-bit, _WIN32 is defined, but not ↵Scott Wegner2007-05-181-1/+1
| | | | | | | WIN32, so I've standardized all #ifdef's to use _WIN32. This should not affect any other platform. Tested: Visual Studio (32- and 64-bit) on Win XP
* [svn-r13720] Pedro Vicente Nunes2007-05-011-1/+1
| | | | | | | | Bug fix The parsing routine -b was not correctly affecting one of the variables that sets the binary output Tested linux
* [svn-r13648] Description:Quincey Koziol2007-04-121-4/+4
| | | | | | | | | | Rename new error handling API routines from H5E<foo>_stack() to H5E<foo>2(). Tested on: Mac OS X/32 10.4.9 (amazon) FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty)
* [svn-r13616] This check-in updates the bin/reconfigure file to point to the ↵Mike McGreevy2007-04-091-78/+64
| | | | | | | | most recent versions of the autotools. Updated autotool versions are: autoconf 2.61, automake 1.10.0, and libtool 1.5.22. Tested on kagiso.
* [svn-r13580] Description:Quincey Koziol2007-04-031-30/+30
| | | | | | | | | | | | Add version # and flags to external link format (as fields in a single byte), in order to accomodate future changes/expansions. Tested on: Mac OS X/32 10.4.9 (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2) FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty)
* [svn-r13507] Pedro Vicente Nunes2007-03-121-8/+12
| | | | make 1.7 files similar to 1.6
* [svn-r13506] Pedro Vicente Nunes2007-03-121-2/+3
| | | | make comments equal in 1.6 and 1.7
* [svn-r13503] Pedro Vicente Nunes2007-03-124-1178/+1178
| | | | Preparation for making 1.6 and 1.7 h5dump more similar and 1.6 to have 1.7 fixed bugs incorporated
* [svn-r13418] Cleaned up some old paths in config/commence.am and removed ↵James Laird2007-02-271-7/+7
| | | | | | | | some comments in the template file config/Makefile.am.blank. This is just a cleanup checkin. Tested on kagiso.
* [svn-r13379] Added 'make help' target. This actually runs a script, ↵James Laird2007-02-231-1/+4
| | | | | | | | bin/makehelp (formatting the output in the makefile was pretty hard). Tested that make still works on kagiso; no code changes at all.
* [svn-r13365] Bug fix.Albert Cheng2007-02-211-26/+0
| | | | | | | | | | | | Description: Multiple copies of Copyright appeared in Makefile.in. This was due to automake copying the copyright right in the included files such as config/commence.am. Solution: Automake treats double hashes as comments and does not copy them to Makefile.in. Changed all the copyright notices in config/*.am to use double hashes for the Copyright right notice. Tested: kagiso via bin/reconfigure.
* [svn-r13359] Fixed a bug where the -shlib flag for h5cc would end up on the ↵James Laird2007-02-201-5/+31
| | | | | | | | Dependency line in the Makefile. Makefile change only. Tested on kagiso, to be used to test on cobalt.
* [svn-r13297] Description:Quincey Koziol2007-02-141-1/+1
| | | | | | | | | | | | | | | | Add small 'h5mkgrp' tool to create groups in an HDF5 file from the command line, allowing the group structure for a file to be created in a script. This tool closely follows the 'mkdir' command line tool in UNIX/Linux. Allow tool library applications to pass a FAPL to the h5tool_fopen() call, giving some additional flexibility to tools which are adding objects to an existing HDF5 file (like h5copy & h5mkgrp). Fix missing files in MANIFEST from previous checkin(s). Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13296] Pedro Vicente Nunes2007-02-141-1/+1
| | | | temporary fix for a daily test failure
* [svn-r13292] Description:Quincey Koziol2007-02-131-1/+1
| | | | | | | | | | | | | | | Add feature to h5copy to allow it to add an object to an existing file, instead of blowing away existing file. Modify h5tools_fopen() routine to take access flags, so it can be used to open an existing file for writing. Added check to h5copy test script that verifies it has produced a file with the correct structure. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13286] Pedro Vicente Nunes2007-02-131-3/+3
| | | | replaced a dataset type from H5T_NATIVE_CHAR to H5T_NATIVE_SCHAR
* [svn-r13285] Pedro Vicente Nunes2007-02-122-67/+2
| | | | remove a test that was incorrectly added previously, that was not the feature that had to be tested
* [svn-r13283] Pedro Vicente Nunes2007-02-122-2/+70
| | | | added a test for the printing of long long numbers greater than 4GB
* [svn-r13280] Pedro Vicente Nunes2007-02-122-13/+145
| | | | 2 tests that were previously incorporated inside the array indices test file were separated from it. These are a test with a dataset with dimensions greater tan 4GB and a test to read by hyperslabs
* [svn-r13264] Updated Makefile.am with new THG copyright notice.Albert Cheng2007-02-072-4/+6
| | | | Ran reconfigure to generate the Makefile.in files.
* [svn-r13261] Updated copyright notices.Albert Cheng2007-02-072-4/+6
| | | | Tested: visual inspection as they are all just comments.
* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-074-8/+12
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
* [svn-r13181] Added a configure check to prevent a failure on Cygwin.James Laird2007-01-231-1/+1
| | | | | | | | | | | | | | It seems that while Cygwin supports the time command, it has trouble with the syntax srcdir="../../hdf5/test" time ./testhdf5 and complains. The solution is to test the above case in configure and not to use the time command if it fails; Cygwin is fine with srcdir="../../hdf5/test" ./testhdf5 Tested on Cygwin and kagiso. This feature shouldn't be a major compatibility problem since every platform but Cygwin is already fine with the current syntax.
* [svn-r13179] Pedro Vicente Nunes2007-01-231-5/+5
| | | | replaced the path to XML schema from NCSA page to hdfgroup.org
* [svn-r13139] Fixed the MULTI problem (Bug #731) that corrupted the data. ↵Raymond Lu2007-01-122-0/+5
| | | | | | | The problem came from the EOA for the whole MULTI file. It's taken out because it's meaningless for MULTI file. Instead, each individual file has its EOA.
* [svn-r13134] Pedro Vicente Nunes2007-01-101-3/+4
| | | | | | | | | | New version of the function h5tools_dump_simple_subset, to display subsetting. The new algorithm is: Introduced an outer loop for cases where dimensionality is greater than 2D. In each iteration a 2D block is displayed by rows in a inner loop. The remainning slower dimensions above the first 2 are incremented one at a time in the outer loop Note: when blocks are introduced, the display is not correct. This is a bug that requires an improvement of the algorithm.
* [svn-r13132] Pedro Vicente Nunes2007-01-102-2/+5
| | | | Fixed #720 h5dump: improve how region references are displayed. h5dump now uses the new API function H5Rget_name to display the name of the dataset referenced instead of its ID. Added a case to the script test file
* [svn-r13078] Pedro Vicente Nunes2006-12-191-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | one more fix related to bug 551. the printing of the subsetting parameters was not using the new hsize_t printing format correct output is now [pvn@kagiso ad]$ /home1/pvn/build_hdf5/tools/h5dump/h5dump -d /a -s "0,8899716890" -c "1,10" jasp_char.h5 HDF5 "jasp_char.h5" { DATASET "/a" { DATATYPE H5T_STD_I8LE DATASPACE SIMPLE { ( 20, 8899716900 ) / ( 20, 8899716900 ) } SUBSET { START ( 0, 8899716890 ); STRIDE ( 1, 1 ); COUNT ( 1, 10 ); BLOCK ( 1, 1 ); DATA { (0,8899716890): 1, (0,8899716891): 1, (0,8899716892): 2, (0,8899716893): 2, (0,8899716894): 3, (0,8899716895): 3, (0,8899716896): 4, (0,8899716897): 4, (0,8899716898): 5, (0,8899716899): 5 } } } }
* [svn-r13076] Pedro Vicente Nunes2006-12-191-1/+2
| | | | | | | | | | | | | | fix for bugzilla bug #551 several programming errors contributed to this bug 1) the parsing of subsetting was using atoi to convert the parameter to an int, which caused problems for numbers greater that int. Substitute with atof 2) several index counters were declared as int, use hsize_t instead 3) the numerical format passed for printf was %lu, defined one compatible with hsize_t instead (unsigned long long)
* [svn-r13064] Pedro Vicente Nunes2006-12-143-14/+20
| | | | | | | | | | | | | | | | | | | Fix several bugs 1) the parsing of subsetting was using atoi to convert the parameter to an int, which caused problems for numbers greater that int. Substitute with atof 2) the printing of indices in the subsetting case was not being done. Solution: calculate the element position at the start of the subsetting using the algorythm Given an index I(z,y,x) its position from the beginning of an array of sizes A(size_z, size_y,size_x) is given by Position of I(z,y,x) = index_z * size_y * size_x + index_y * size_x + index_x And pass that position to the function that dumps data, h5tools_dump_simple_data. 3) several index counters were declared as int, use hsize_t instead 4) modified the test generation program so that it includes test cases for subsetting of 1d, 2d, 3d, and 4d arrays and add these tests to the shell script
* [svn-r13034] Description:Quincey Koziol2006-12-081-1/+1
| | | | | | | | Take out separate memory type in the file for SOHM objects and create aliases for existing memory types for SOHM use. Tested on: FreeBSD/32 4.11 (sleipnir)
* [svn-r13024] Pedro Vicente Nunes2006-12-061-10/+12
| | | | | | | | fixed 2 initializations of char* with HDstrdup and HDcalloc info->prefix = HDcalloc(1, 1); fname = HDstrdup(argv[opt_ind]); some were exposed by compiler warnings
* [svn-r12929] Hopefully this really is a fix for the tg-login errors.James Laird2006-11-161-3/+1
| | | | | | | | | | | The version of libtool used by HDF5 isn't directly affected by the reconfigure script; instead, libtoolize --force must be used by hand. Libtool was the source of the problem, so rolling its version back to 1.5.14 should solve the issue (at least temporarily). Reconfigure should still work on both heping and kagiso. Tested on heping, kagiso, and tg-login3.
* [svn-r12911] Backed up to previous versions of automake and libtool. ↵James Laird2006-11-141-1/+3
| | | | | | | | Hopefully this will fix issues on tg-login3. bin/reconfigure should still work on both heping/mir and kagiso.
* [svn-r12902] Checkin of Shared Object Header Message work.James Laird2006-11-131-1/+1
| | | | | | | | | | | | This feature is still in progress; Shared Object Header Messages are not complete as a feature and are not thoroughly tested. There are still "TODO" comments in the code (comments with the word "JAMES" in them, so as not to be confused with other TODO comments). Hopefully this checkin will reduce the liklihood of conflicts as I finish implementing this feature. All current tests pass on juniper, copper (parallel), heping, kagiso, and mir.
* [svn-r12895] Description:Quincey Koziol2006-11-131-4/+4
| | | | | | | | | | | | | Add new H5Lget_val_by_idx() routine & tests. Also includes most of changes for H5Ldelete_by_idx() routine. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir) AIX/32 5.? (copper)
generated by cgit v0.12 at 2024-09-04 16:04:22 (GMT)