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* [svn-r9993] Purpose:James Laird2005-02-112-2/+2
| | | | | | | | | | | | | | | | | | | | Bug fix Description: Arabica exhibited strange errors when linker found wrong versions of header files. This happened because include directories were given to linker in the wrong order. Solution: Move include directories from AM_CFLAGS variable to INCLUDES variable to put them before CPPFLAGS variable. Trust me, it works. This bug may also have contributed to strange errors on other platforms (kelgia?). Platforms tested: copper, sleipnir, arabica. (h5dump broke while building on arabica, but this happened in a clean checkout, too).
* [svn-r9989] Purpose:Robert E. McGrath2005-02-113-0/+30
| | | | | | | | | | | | | | | Feature Description: Adding support for NBIT compression to dumper Solution: Platforms tested: arabica, verbena, copper64 Misc. update:
* [svn-r9988] Purpose:James Laird2005-02-111-15/+4
| | | | | | | | | | | | | | | | | | | | Bug fix Description: pmake (on modi4, for instance) complains about undefined variables if it is run without the -V flag, which turns those errors to warnings. Solution: Added test to configure.in to see if $MAKE will allow Makefiles with undefined variables. If not, sets -V flag in AM_MAKEFLAGS. Ensured that all custom make targets use AM_MAKEFLAGS. Also defined all variables that caused errors in top-level Makefile.am. This means that pmake can be used to build hdf5 *from the top level only*. To run make from a subdirectory, still need to use -V flag (or use make or gmake). Platforms tested: modi4, heping, copper, sleipnir
* [svn-r9961] Pedro Vicente Nunes2005-02-081-3/+15
| | | | | | | | | | | | | | | | | | | | | | | Purpose: bug fix, new test file Description: h5dump was not properly displaying array indices > 3D Solution: added the same algorythm and data structure that h5diff uses to calculate the array index from a element number position Platforms tested: linux solaris Misc. update:
* [svn-r9951] Purpose: Minor bug fix.Raymond Lu2005-02-071-14/+44
| | | | | | | | | | | | | Description: The byte order for all 1-byte integer types was fixed as little-endian even on a big-endian machine. This's corrected in h5detect.c. When types are only 1 byte long, a native int is used substitute the type to detect byte order. Some tools like h5dump and h5repack are also corrected in this case. Platforms tested: fuss, copper, sol.(There're some failures from the recent configure change). Misc. update: Information in the RELEASE.txt.
* [svn-r9930] James Laird2005-02-031-1/+1
| | | | | | | | | | | | | | | | | | Purpose: Bug fix Description: Parallel builds were breaking in tools/lib Solution: talign didn't realize it depended on libh5tools.la because its dependencies listed the full path (../../tools/lib/libh5tools.la). Changed this, and made similar changes in a couple of other directories. This checkin should also add the --foreign flag to every Makefile.in Platforms tested: sleipnir (minor change)
* [svn-r9928] Purpose:Quincey Koziol2005-02-031-1/+1
| | | | | | | | | | | | | New feature Description: Add basic code for new B-tree implementation. They don't do much yet, aren't hooked up to anything yet and the format may change, but I'd like to start getting them into the daily tests. Platforms tested: FreeBSD 4.11 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r9921] Purpose:Pedro Vicente Nunes2005-02-021-1/+1
| | | | | | | | | | | | | | | bug fix Description: the test fail condtion of a close function was set to if H5Dclose < 1 Solution: set to < 0 Platforms tested: linux Misc. update:
* [svn-r9920] Purpose:James Laird2005-02-021-2/+3
| | | | | | | | | | | | | | | | | | | Bug fix Description: Found the permanant fix to automake/CVS dependency problem Solution: Added AM_MAINTAINER_MODE macro to configure.in. Now automake will never try to regenerate Makefiles, Makefiles.in, configure, H5config.h, etc. when they are out of date, nor will it print any warnings. Developers should be very very careful to use reconfigure script, and can add --enable-maintainer-mode flag to configure on heping to regenerate these files correctly. Platforms tested: heping sleipnir copper
* [svn-r9915] Purpose:James Laird2005-02-021-6/+6
| | | | | | | | | | | | | | | Bug fix Description: Configuration files' timestamps were incorrect. Solution: Update Makefiles.in. Also added correct paths to autotools on heping, so heping build should be able to re-generate configuration files even if they are still broken. Platforms tested: sleipnir
* [svn-r9912] Purpose:James Laird2005-02-011-87/+8
| | | | | | | | | | | | | | | | | Bug fix Description: Dependencies between configure files (aclocal, configure.in, configure, Makefiles.am and .in) are still causing Makefiles to try to run autotools during build. Solution: Committed all Makefiles.in to update their timestamps. As a temporary measure, forcibly prevented automake from running autotools during build by redefining the variables it uses. Platforms tested: sleipnir (No changes to Makefile content)
* [svn-r9907] Purpose:James Laird2005-02-011-0/+1
| | | | | | | | | | | | | Bug fix Description: Different compilers use different flags to include Fortran module files Solution: Changed boilerplate to use configure variable rather than hardcoded -M flag. Platforms tested: sleipnir, sol, copper
* [svn-r9902] Purpose:James Laird2005-02-013-172/+762
| | | | | | | | | | | | | | | Configuration feature Description: HDF5 now uses automake to generate Makefiles Solution: Makefile.in files are now generated from Makefile.am files. To reconfigure (after chaning a Makefile.am or configure.in): /bin/sh bin/reconfigure.sh Platforms tested: Many
* [svn-r9778] Purpose:Quincey Koziol2005-01-081-1/+2
| | | | | | | | | | | | | | | Remove feature Description: Retire threaded, balanced binary tree code from HDF5 use. Requiescat in pace... Also, regenerate dependencies files. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Too minor to require full h5committesting (the code is already disconnected from everything except its tests)
* [svn-r9747] Purpose:Xuan Bai2005-01-051-0/+1
| | | | | | | | | | | | | | | | | | | Bug fix. Description: When building h5dumpgentest.c with Visual C++ 6.0, I got the following warning message: h5dumpgentest.c(4528) : warning C4013: 'h5tools_can_encode' undefined; assuming extern returning int Solution: Add the header file h5tools.h into h5dumpgentest.c. Platforms tested: Heping (Linux) Visual C++ 6.0 on Windows XP/2000. .NET on Windows XP. (Tested with SZIP-with-encoder and SZIP-without-encoder). Misc. update:
* [svn-r9727] Purpose:Quincey Koziol2004-12-294-344/+34
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-) Description: Generally speaking, this is the "signed->unsigned" change to selections. However, in the process of merging code back, things got stickier and stickier until I ended up doing a big "sync the two branches up" operation. So... I brought back all the "infrastructure" fixes from the development branch to the release branch (which I think were actually making some improvement in performance) as well as fixed several bugs which had been fixed in one branch, but not the other. I've also tagged the repository before making this checkin with the label "before_signed_unsigned_changes". Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel & fphdf5 FreeBSD 4.10 (sleipnir) w/threadsafe FreeBSD 4.10 (sleipnir) w/backward compatibility Solaris 2.7 (arabica) w/"purify options" Solaris 2.8 (sol) w/FORTRAN & C++ AIX 5.x (copper) w/parallel & FORTRAN IRIX64 6.5 (modi4) w/FORTRAN Linux 2.4 (heping) w/FORTRAN & C++ Misc. update:
* [svn-r9542] Purpose:Albert Cheng2004-11-182-0/+35
| | | | | | | | | | | | | | | | | | | Bug fix (#264) Description: h5dump did not print attribute data in ASCII format when -r is used. Solution: Added the ability to print in ASCII for Attributes Data also. Added a test for printing Attributes with -r option. Platforms tested: H5committested. Also in heping. Misc. update: Update MANIFEST.
* [svn-r9495] Purpose:Robert E. McGrath2004-11-021-10/+10
| | | | | | | | | | | | Fix SZIP filter to dynmically detect encoder. Description: Solution: See: http://hdf.ncsa.uiuc.edu/RFC/SZIP/Szip_dynamic_12_Oct.pdf Changes to h5dump tests, contingent on detecting SZIP encoder.
* [svn-r9370] Purpose:Quincey Koziol2004-10-062-89/+69
| | | | | | | | | | | | | | | Refactor code Description: Refactor common code for determining the native type for using in the tools into separate routine. Also, reduce diffs between the two branches and bring back some fixes from the development branch to the release branch. Platforms tested: FreeBSD 4.10 (sleipnir) too minor to require h5committest
* [svn-r9364] Raymond Lu2004-10-051-3/+24
| | | | | | | | | | | | Purpose: change feature Description: Back up support bitfield and time datatypes in H5Tget_native_type.Leave it to future support. Let it return "not supported" error message for now. Platforms tested: h5committest and fuss. Misc. update: RELEASE.txt
* [svn-r9234] Purpose:Quincey Koziol2004-09-091-1/+1
| | | | | | | | | | | | | | | | | | | | | | | Code cleanup Description: Tweak recent "forward compatibility" changes to the H5E* API (which allowed for the old H5E API functions to remain unchanged) by allowing for the error stack callback function (H5E_auto_t) to also remain unchanged from the 1.6 branch. This required changing the H5E{get|set}_auto routines to have the old style H5E_auto_t type (which didn't have a stack ID parameter) and the new H5E{get|set}_auto_stack routines to have a newer "H5E_auto_stack_t" type (which has a stack ID parameter). This should make the H5E API changes as forwardly compatible as possible. One side-affect of this change was that it was impossible to determine if the current auto error callback was the old style (H5E_auto_t) or the new style (H5E_auto_stack_t) of callback, so a new API function (H5Eauto_is_stack) was adde to query this. Platforms tested: FreeBSD 4.10 (sleipnir) IRIX64 6.5 (modi4) h5committest
* [svn-r9183] Purpose: New featureRaymond Lu2004-09-011-12/+3
| | | | | | | | | | | | Description: Restore 6 old error API functions back to the library to be backward compatible with v1.6. They are H5Epush, H5Eprint, H5Ewalk, H5Eclear, H5Eset_auto, H5Eget_auto. These functions do not have error stack as parameter. Solution: Internally, these functions use default error stack. Platforms tested: h5committest and fuss. Misc. update: RELEASE.txt
* [svn-r8983] Purpose:Quincey Koziol2004-08-021-89/+89
| | | | | | | | | | | | Update dependencies Description: Update dependencies after config/depend1.in bugfix Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel IRIX64 6.5 (modi4) h5committested
* [svn-r8852] Purpose:Pedro Vicente Nunes2004-07-092-29/+84
| | | | | | | | | | | | | | | | h5dump new tests Description: added new tests for the print of array indices (nested objects, several ranks) Solution: Platforms tested: linux AIX solaris Misc. update:
* [svn-r8826] Purpose:Pedro Vicente Nunes2004-07-073-133/+122
| | | | | | | | | | | | | | | | | | h5dump new tests Description: added more tests for the escape/not escape feature for string data (with vlen, with compound, with char data) Solution: Platforms tested: linux solaris AIX Misc. update:
* [svn-r8813] Purpose:Pedro Vicente Nunes2004-07-061-1/+1
| | | | | | | | | | | | | | bug fix Description: one run from the tests had a wrong dataset name Solution: Platforms tested: linux (small ) Misc. update:
* [svn-r8812] Purpose:Pedro Vicente Nunes2004-07-063-61/+162
| | | | | | | | | | | | | | | | | | h5dump new tests Description: added new tests for the -p option, superblock, file contents, fill values, array indices. Solution: Platforms tested: linux AIX solaris Misc. update:
* [svn-r8792] Purpose:Pedro Vicente Nunes2004-07-021-25/+1
| | | | | | | | | | | | | | | | | | | change features Description: for the file contents dump and for hardlinks, one arrow "->" is printed, followed by the first found name for that object options for not printing specific types of objects were postponed Solution: Platforms tested: linux solaris AIX Misc. update:
* [svn-r8790] Purpose:Pedro Vicente Nunes2004-07-022-126/+165
| | | | | | | | | | | | | | | | | | | | | | | | | Description: the original code that showed a name for HARDLINK was reassigning that name to a name made in the dump traversal (made by concatenation by nested objects) Solution: removed this reassigmnet now the name showed after HARDLINK is always the first name found for that object (this object is printed once interely; subsequent printings show the word HARDLINK and the first name ) Platforms tested: linux AIX solaris Misc. update:
* [svn-r8782] Purpose:Quincey Koziol2004-07-011-2/+2
| | | | | | | | | | | Code cleanup Description: Clean up almost all warnings from Windows builds. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r8781] James Laird2004-07-012-16/+49
| | | | | | | | | | | | | | | | Purpose: HDF5 now supports SZIP with no encoder. Description: SZIP can be configured to have both encoder and decoder or just to have the decoder. HDF5 can now query the configuration of any filter, and will throw errors if users try to write using a filter with encoding disabled. Solution: Added H5Zget_filter_info function, changed API for H5Pget_filter and H5P_get_filter_by_id. See SZIP RFC. Platforms tested: Copper (fortran, C++, parallel), Sleipnir (C++), Arabica (fortran, C++), Verbena (fortran, C++) Misc. update:
* [svn-r8777] Purpose:Pedro Vicente Nunes2004-06-301-3/+4
| | | | | | | | | | | | | changed the name of one dataset, it was confusing Description: Solution: Platforms tested: linux (small) Misc. update:
* [svn-r8773] Purpose:Pedro Vicente Nunes2004-06-301-14/+11
| | | | | | | | | | | | | | | | | bug fix Description: the indentation was not made properly for nested objects when printing array indices Solution: added the indentation to h5tools_simple_prefix function Platforms tested: linux AIX solaris Misc. update:
* [svn-r8760] Purpose:Quincey Koziol2004-06-291-1/+3
| | | | | | | | | | | | | Code cleanup & small bug fix Description: Regenerate dependency files Add htri_t as separate type from hbool_t for code tracing purposes. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel too minor to require h5committest
* [svn-r8758] Purpose:Pedro Vicente Nunes2004-06-292-10/+43
| | | | | | | | | | | | | | | | | h5dump new feature, bug fix Description: added the dump of unmamed types to the file contents fixed a bug in the type array, it was printing invalid characters with the array indices option on Solution: Platforms tested: linux AIX solaris Misc. update:
* [svn-r8749] Purpose:Pedro Vicente Nunes2004-06-282-97/+196
| | | | | | | | | | | | | | | | | | | | | | | | | | | | dumper new features Description: 1) added options for not printing : datasets, groups, datatypes, links 2) added a section for the user block 3) in the traversal routine, added the printing of an arrow for soft links and t he word HARDLINK for hardlinks the print of the file contents is made during traversal , instead of at the e nd of it (this is helpful for very large files, where the wait time can be very long) 4) changed the description of the fill value properties 5) added a colon after the printing of the array indices Solution: Platforms tested: linux AIX solaris Misc. update:
* [svn-r8735] Purpose:Pedro Vicente Nunes2004-06-241-28/+12
| | | | | | | | | | | | | | | cleaned SGI compiler warnings Description: Solution: Platforms tested: linux solaris AIX Misc. update:
* [svn-r8732] Purpose:Quincey Koziol2004-06-231-1/+1
| | | | | | | | | | | | Code cleanup Description: Reduce compiler warnings on SGI IRIX Platforms tested: FreeBSD 4.10 (sleipnir) SGI IRIX6 (Cheryl's machine) Too minor to require full h5committest
* [svn-r8718] Purpose:Pedro Vicente Nunes2004-06-221-1/+1
| | | | | | | | | | | | | | bug fix Description: the name of a dataset in one test had a typo Solution: Platforms tested: linux (small change ) Misc. update:
* [svn-r8715] Purpose:Pedro Vicente Nunes2004-06-223-65/+151
| | | | | | | | | | | | | | | | | | | | | | h5dump output change, new tests Description: the storage layout output format the storage layout output format had some changes same for the user defined filter add an option (-y) for not printing the array indices (default is print indices ) the option for escaping non printable characters covers all characters (default is not escape) (this might be not very portable, the test files are tstring.ddl and tstringe.ddl ) add tests for the new options Solution: Platforms tested: linux solaris AIX Misc. update:
* [svn-r8714] *** empty log message ***Raymond Lu2004-06-214-21/+47
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* [svn-r8703] Purpose: bug fixRaymond Lu2004-06-171-48/+42
| | | | | | | | | Description: After I added H5S_NULL dataspace to dumper test, the output violate XML schema for attribute data. Solution: changed. Platforms tested: RH8(fuss), minor change, only dumper is involved.
* [svn-r8688] Purpose:Pedro Vicente Nunes2004-06-151-1/+1
| | | | | | | | | | | | | | | | h5dump new feature Description: add processing of tab characters (in the context of the new option process CR/LF) Solution: Platforms tested: linux solaris AIX Misc. update:
* [svn-r8655] Purpose:Quincey Koziol2004-06-111-1/+1
| | | | | | | | | | | Code cleanup Description: Add more files that should be removed to the clean & distclean targets. Platforms tested: FreeBSD 4.10 (sleipnir) Too minor to require h5committest
* [svn-r8647] Purpose:Pedro Vicente Nunes2004-06-101-664/+288
| | | | | | | | | | | | | | h5dump update Description: updated the h5dump test files generator , so that it coincides with the 1.6 branch Solution: Platforms tested: linux (small) Misc. update:
* [svn-r8644] Purpose: h5dump new featuresPedro Vicente Nunes2004-06-103-40/+515
| | | | | | | | | | | | | | | | | | | | | | | Description: added the code for print strings with new line and display the path of references (new source files h5tools_ref.c and .h ) added a test suite in testh5dump.sh.in for ( note : to create testh5dump.sh , one must redo ./configure; this detects the availability of filters and generates testh5dump.sh accordingly) 1) storage layout 2) fill value 3) print reference with path 4) print strings with new lines 5) filters Solution: Platforms tested: linux solaris AIX Misc. update:
* [svn-r8635] Purpose:Quincey Koziol2004-06-091-1/+1
| | | | | | | | | | | Bug fix Description: Correct path to new testh5dump.sh, now that it's generated. Platforms tested: FreeBSD 4.10 (sleipnir) w & w/o srcdir Too minor to require h5committest
* [svn-r8627] Purpose:Quincey Koziol2004-06-091-0/+9
| | | | | | | | | | | | Update shell scripts Description: Switch to generating the testh5dump.sh script at configure time, so we can determine which filters are available to test. Platforms tested: FreeBSD 4.9 (sleipnir) too small to require h5committest
* [svn-r8622] Purpose:Pedro Vicente Nunes2004-06-073-81/+1292
| | | | | | | | | | | | | | | | | | | | | | | | | h5dump new version Description: added the changes already made for 1.6 support for dumping of 1) filters 2) storage layout 3) fill value 4) comments 5) superblock 6) file contents 7) array indices Solution: Platforms tested: linux solaris AIX Misc. update:
* [svn-r8562] Purpose: New featureRaymond Lu2004-05-213-67/+124
| | | | | | | Description: Add null dataspace to h5dump and h5ls. Platforms tested: h5committest
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