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* [svn-r27493] Trying again to merge the F2003_v1.10 branch to the trunk.Scot Breitenfeld2015-08-111-5/+24
| | | | Tested: h5committest --PASSED--
* [svn-r27489] reverted merge of branchScot Breitenfeld2015-08-111-24/+5
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* [svn-r27470] svn merge -r27425:27460 https://svn.hdfgroup.uiuc.edu/hdf5/trunkScot Breitenfeld2015-08-051-4/+1
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* | [svn-r27469] Merge from trunk with dual-binary CMake code.Allen Byrne2015-08-052-14/+17
| | | | | | | | Tested: local linux with CMake
* | [svn-r27378] svn merge -r27326:27377 https://svn.hdfgroup.uiuc.edu/hdf5/trunkScot Breitenfeld2015-07-141-5/+2
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| * [svn-r27364] Add Mac Framework supportAllen Byrne2015-07-091-5/+2
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* | [svn-r27221] Reworked Fortran autools REAL KIND detection.Scot Breitenfeld2015-06-161-0/+5
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* | [svn-r27186] added fix for jam with promoted reals and integersScot Breitenfeld2015-06-101-0/+1
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* | [svn-r27167] more DT fixesScot Breitenfeld2015-06-091-0/+1
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* | [svn-r27164] various bug fixes for DTScot Breitenfeld2015-06-081-0/+1
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* | [svn-r27154] fixed issue with mis-matching long double between Fortran and CScot Breitenfeld2015-06-051-0/+1
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* | [svn-r27151] fixed __float128 errorsScot Breitenfeld2015-06-041-0/+1
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* | [svn-r27140] fixed interger*16 supportScot Breitenfeld2015-06-031-0/+1
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* | [svn-r27137] svn merge -r27115:27135 https://svn.hdfgroup.uiuc.edu/hdf5/trunkScot Breitenfeld2015-06-021-2/+2
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| * [svn-r27133] - Add a new attribute function characterstic for format:Mohamad Chaarawi2015-06-011-2/+2
| | | | | | | | | | | | | | | | * H5_ATTR_FORMAT(X,Y,Z) __attribute__((format(X, Y, Z))) - Rename UNUSED attribute characterstic to H5_ATTR_UNUSED. - Rename NORETURN attribute characterstic to H5_ATTR_NORETURN tested with h5committest.
* | [svn-r27122] removed dependency on generatored fortran source codeScot Breitenfeld2015-05-281-1/+0
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* | [svn-r27115] Moved testing KINDs and SIZEOFs to configure.Scot Breitenfeld2015-05-271-0/+11
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* | [svn-r26869] removed the --enable-fortran2003 option, it is now just ↵Scot Breitenfeld2015-04-211-3/+0
| | | | | | | | --enable-fortran
* | [svn-r26825] Added include for preprocessing fortran files with configure ↵Scot Breitenfeld2015-04-161-2/+3
|/ | | | definitions
* [svn-r26711] Recommitting revisions 26669 and 26670, removing VPATH and ↵Larry Knox2015-04-021-1/+0
| | | | | | | | redundant /usr/include and lib in fcompile and link flags checks, now that I have run reconfigure. Also changed paths to h5cc, etc. in scripts to run installed examples from relative paths to absolute paths. Tested with h5committest.
* [svn-r26660] HDFFV-9131: autotols reworkAllen Byrne2015-03-301-2/+0
| | | | | | | Remove CXX_CONDITIONAL remove unneeded/obsolete sections. h5commtitest
* [svn-r26594] Merge macros and fortran changes from dual_binary feature.Allen Byrne2015-03-251-5/+5
| | | | Tested: local linux
* [svn-r26509] Run reconfigure after merges from autotools_rework branch.Jerome Soumagne2015-03-201-2/+0
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* [svn-r26333] Eliminates gcc warnings due to -Wunsuffixed-float-constants.Dana Robinson2015-03-011-2/+2
| | | | | | | | | | | | - Adds 'F' suffixes for most float constants. - A few constants MUST be of type double. These now receive the long double L suffix and are then cast to double. I do this via a new H5_DOUBLE() macro which was added to H5private.h. Fixes: HDFFV-9148 Tested on: h5committest
* [svn-r26329] Merge of r26069, r26070, and r26072 from the ↵Dana Robinson2015-02-272-7/+0
| | | | | | | | | | | | | | | | | | features/autotools_rework branch. Removed the configure option that allows selective disabling of individual internal filters (fletcher32, shuffle, etc.). This feature mucked up the code with a lot of #ifdefs, saved very little space, and was not scalable to a general scheme for library size reduction. We've decided to remove the feature while we investigate a more general scheme for decreasing the library size. Part of: HDFFV-9086 Tested on: h5committest
* [svn-r26303] remove files with .clog2 extension generated by MPE when doing ↵Mohamad Chaarawi2015-02-251-3/+3
| | | | make clean.
* [svn-r26208] Update cmake minimumsAllen Byrne2015-02-181-1/+1
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* [svn-r26188] Merged autotools fixes into the trunk:Scot Breitenfeld2015-02-161-1/+2
| | | | HDFFV-9089, HDFFV-9091, HDFFV-9092, HDFFV-9094, HDFFV-9095
* [svn-r26180] merge configure fixes for HDFFV-9068,9069,9096,9097,9135 from ↵Mohamad Chaarawi2015-02-161-1/+0
| | | | | | | | | | | | autotools_rework branch: - Remove Infering parallel compilers (C and Fortran) from configure.ac - Remove restriction to build shared with parallel - Cleanup parallel sections in configure.ac - remove large file support checks - MPE fixes. tested with h5committest.
* [svn-r25570] UNDO:Added option to build tools static when building shared ↵Allen Byrne2014-09-031-28/+8
| | | | | | | | libraries. This will prevent 'dll' being appended to the tool name on windows. See HDFFV-8292. Windows DLL linkage problem because of defines needed. Tested: local linux
* [svn-r25569] Added option to build tools static when building shared ↵Allen Byrne2014-09-031-8/+28
| | | | | | libraries. This will prevent 'dll' being appended to the tool name on windows. See HDFFV-8292. Tested: local linux
* [svn-r25397] - remove configure checks for MPI_File_get_size and BigMohamad Chaarawi2014-07-071-1/+0
| | | | | MPI_File_set_size as they are supported by most MPI implementations. - fix bug in t_mpi.c (HDFFV-8856)
* [svn-r25188] Implement change to cmake_ext_mod config folderAllen Byrne2014-05-141-9/+9
| | | | Tested: local linux
* [svn-r25117] Removed LT_ADD_LIBHDF5_DEPENDENCY configure conditional to roll ↵Larry Knox2014-04-251-1/+0
| | | | | | | | | | | back fix for removing rpaths from l ib files. The fix also removed dependencies on libhdf5, etc. when the --disable-sharedlib-rpath co nfigure option was invoked. Added instead configure variable hardcode_into_lib=no. This removes rpath from lib files on Linux and solaris machines. Tested with h5committest on jam, koala, ostrich and platypus (cmake), and with configure option --disable-sharedlib-rpath on emu, platypus and quail.
* [svn-r25113] Fixed Subversion EOL and executable attributes. No code changes.Dana Robinson2014-04-251-3/+3
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* [svn-r24932] HDFFV-8290: Remove unnecessary $(srcdir) and use AM_CPPFLAGS ↵Allen Byrne2014-03-312-76/+460
| | | | | | instead of INCLUDES. Update automake to 1.14.1 h5committest
* [svn-r24864] Description:Quincey Koziol2014-03-211-1/+0
| | | | | | | | | | | | | | | | | | Remove all traces of MPI-POSIX VFD and GPFS detection/code. Remove remaining traces of stream VFD. Remove testpar/t_posix_compliant test (it's not actually verifying anything). Clean up H5D__mpio_opt_possible() further. Moved environment variable that disables MPI collective operations into MPI-IO VFD (instead of it being in src/H5S.c). A few other small code cleanups. Tested on: Mac OSX/64 10.9.2 (amazon) w/parallel & serial
* [svn-r24826] HDFFV-8700 -Allen Byrne2014-03-181-3/+3
| | | | | | | | KitWare recommendations: Change CMake commands to lower case. Bump up CMake minimum versions. Split test file into separate file for h5repack test. Tested: local linux
* [svn-r24824] HDFFV-8700 -Allen Byrne2014-03-181-4/+4
| | | | | | | | KitWare recommendations: Change CMake commands to lower case. Bump up CMake minimum versions. Split test file into separate file for h5repack test. Tested: local linux
* [svn-r24803] Description:Quincey Koziol2014-03-163-55/+22
| | | | | | | | | | | | Rename GCC_DIAG_OFF/ON macros to H5_GCC_DIAG_OFF/ON and move from src/H5private.h to src/H5public.h. Wrap typedef of hsize_t and hssize_t in DIAG_OFF(long-long) macros. Clean up a bunch of "macro '-' is unused" warnings. Tested on: Mac OSX/64 10.9.2 (amazon) w/gcc 4.8.2, C++, FORTRAN, parallel (too minor to require h5committest)
* [svn-r24789] Bump up the minimum cmake versionAllen Byrne2014-03-131-1/+1
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* [svn-r24782] HDFFV-8700 -Allen Byrne2014-03-112-57/+57
| | | | KitWare recommendations: Change CMake commands to lower case.
* [svn-r24781] HDFFV-8700 -Allen Byrne2014-03-112-78/+78
| | | | | | | KitWare recommendations: Change CMake commands to lower case. Remove INCLUDE_DIRECTORIES in src for target level includes. Change ADD_DEFINITIONS package debug defines into CMake option. Remove -DNDEBUG
* [svn-r24403] Cleanup temp test filesAllen Byrne2013-11-041-2/+2
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* [svn-r24400] Maintenance: When the libraries are built and tested in place, ↵Elena Pourmal2013-11-032-2/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | several files are left behind by "make distclean" (see below); modified appropriate Makefile.am files and ran bin/reconfigure to create Makefile.in to fix the problem. Here is the list of the files "make disclean" doesn't remove: tools/h5dump/testfiles tools/h5repack/testfiles/h5diff_attr1.h5 tools/h5repack/testfiles/tfamily00000.h5 tools/h5repack/testfiles/tfamily00010.h5 tools/h5repack/testfiles/tfamily00002.h5 tools/h5repack/testfiles/tfamily00004.h5 tools/h5repack/testfiles/tfamily00006.h5 tools/h5repack/testfiles/tfamily00008.h5 tools/h5repack/testfiles/tfamily00001.h5 tools/h5repack/testfiles/tfamily00003.h5 tools/h5repack/testfiles/tfamily00005.h5 tools/h5repack/testfiles/tfamily00007.h5 tools/h5repack/testfiles/tfamily00009.h5 tools/h5jam/testfiles/h5jam-ub-nohdf5.txt.err-sav tools/h5jam/testfiles/h5jam-help.txt.err-sav tools/h5jam/testfiles/h5unjam-help.txt.err-sav tools/h5jam/testfiles/h5jam-ub-nohdf5.txt.out-sav tools/h5jam/testfiles/h5jam-help.txt.out-sav tools/h5jam/testfiles/h5unjam-help.txt.out-sav hl/fortran/test/dsetf5.h5 c++/test/tattr_multi.h5 c++/test/tattr_scalar.h5 c++/test/tfattrs.h5 c++/test/tattr_basic.h5 c++/test/tattr_compound.h5 c++/test/tattr_dtype.h5 Tested on jam and emu in place and using srcdir with the svn stat command. This fix doesn't address two problems: tool/h5dump/testfiles directory is not removed by "make distclean" and it should be tools/misc/testfiles directory is removed by "make distclean" and it shouldn't be
* [svn-r24392] Cleanup testfiles from scripts. Update lists of files to be ↵Allen Byrne2013-11-011-1/+16
| | | | | | cleaned. CMake update to clean testfiles. Tested: local cmake, autools, and h5committest
* [svn-r24376] Updated all code to use HDmalloc, HDcalloc, and HDfree.Dana Robinson2013-10-311-2/+2
| | | | | | | | | | | | | Prep work for adding a memory free function, part of HDFFV-8551. Tested on: 32-bit LE linux (jam) * with C++, Fortran * with thread safety on These are minor changes (almost entirely renaming foo functions to HDfoo) that don't change functionality. This should not require a full commit test.
* [svn-r24194] Don't add hdf5 library dependencies to lib files when ↵Larry Knox2013-09-241-0/+1
| | | | | | --disable-sharedlib-rpath configure option is invoked. Fix for HDFFV-8276. Tested with h5committest and on hdf-duck.
* [svn-r24101] Description:Quincey Koziol2013-09-051-7/+10
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Clean up warnings, enable new compiler warning flag(s) and bring back changes from Coverity branch: r20813: Remove the dead code as listed for coverity bug #1722. h5committested. r20814: Issue 69: Check return value and throw error if negative return. Also free datatype id on error r20815: Use HDstrncpy. --gh r20816: Replaced one last HDstrcat call with HDstrncat to resolve coverity issue 832. r20817: Use HDstrncpy and HDstrncat. --gh r20818: Purpose: Fix valgrind issues with h5jam Description: Modified h5jam to free strings strdup'd in parse_command_line before exit. Note that they may still not be freed in case of error, due to the widespread use of exit(). r20819: Issue 80: change loop to use int as loop index. r20820: Maintenance: Fixed the bug found by coverity CID 788 There were two problems with this function: 1) it tried to unnecessary free NULL pointer 2) it tried to allocate c_name buffer that is done by H5Pget_class_name Tested on: Mac OSX 10.8.4 (amazon) w/gcc 4.8.1, C++ & FORTRAN (too minor to require h5committest)
* [svn-r24029] Move TESTS to seperate file to allow easier editing by all ↵Allen Byrne2013-08-192-427/+429
| | | | | | developers. Tested: local linux
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