| Commit message (Collapse) | Author | Age | Files | Lines |
|
|
|
| |
Tested with h5committest on jam, koala and ostrich.
|
|
|
|
|
|
| |
if configured with --disable-static the default for HDF5_USE_SHLIB in the compile scripts will be changed to yes. This is a fix for HDFFV-8141, where the compile scripts try to link to non-existant static hdf5 libraries.
Tested on jam,koala,ostrich(h5committest) and other THG machines.
|
| |
|
|
|
|
|
|
| |
autotools TESTS var, rename configure.in to configure.ac, convert test scripts from hard *.sh to configure managed *sh.in files.
Tested: h5committest
|
|
|
|
|
|
| |
libtool 2.4.2
Tested THG machines.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Fix for HDFFV-8107 testh5diff will fail if build/test in HDF5 source tree
Description:
This is sub-task for "HDFFV-8105 testh5diff.sh uses the wrong operator (-a) in an if statement."
From the HDFFV-8105's update, h5diff test failed if build&test is performed in HDF5 source tree because 'cp' try to copy test files to self dir.
It's addressed by skipping if cp's src dir and dest dir is same.
Also this applied for all other tools under src/tools dir.
No change to the CMakeLists.txt files because CMake cautions/demands that in-source builds be avoided.
Tested:
jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), some manual tests as well
|
| |
|
|
|
|
|
|
| |
adding cast
Tested: local linux
|
|
|
|
|
|
| |
for windows when configured with RelWithDebInfo
Tested: local linux and Windows
|
|
|
|
|
|
|
|
| |
Minor code safety issue in test/fheap.c and whitespace in other files.
Tested on:
Mac OSX/64 10.7.3 (amazon) w/debug
(Too minor to require h5committest)
|
|
|
|
| |
Remove "STAR" test as some platforms vary in interpretation.
|
| |
|
|
|
|
| |
Tested: local linux
|
| |
|
|
|
|
|
|
| |
The test scripts for cmake, on windows, and the h5ls shell script do not work properly.
Tested: h5committest
|
|
|
|
| |
runTest.cmake script
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
HDFFV-7602 - GMQS: HDF5 command tools: Provide framework for reusable test files among tools
Stage2 working for h5ls tool.
Description:
Update cmake script to fetch test files from any tools to a test directory
and run test in organized manner.
Also keep the apperance similiar to shell script for better maintainance.
Tested:
CMake (Windows and jam)
|
|
|
|
| |
Tested: local linux and windows
|
|
|
|
|
|
| |
HDFFV-7949
Tested: local linux and h5committest
|
|
|
|
|
|
| |
h5tools.h
Tested: local linux
|
|
|
|
|
|
| |
library uses HDfprintf() functions.
Tested: local linux, jam-pp
|
|
|
|
| |
Checked for HD support.
|
|
|
|
| |
Checked for HD support.
|
|
|
|
| |
Checked for HD support.
|
|
|
|
| |
Checked for HD support.
|
|
|
|
|
|
| |
Fix some more HD prefix issues in tools.
Tested: local linux
|
|
|
|
|
|
|
|
| |
been '%"H5_PRINTF_LL_WIDTH"u'
Moved lib variables windows linking declarations to proper file location.
Tested: local linux windows
|
|
|
|
|
|
| |
h5ls format to use HSIZE_T_FORMAT.
Tested: local linux and windows 32
|
|
|
|
| |
Tested: local linux
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Fix for HDFFV-7838 h5ls: segfault for handling region reference in attribute with -v option
Description:
Segfault occurred when h5ls access region reference data in an attribute.
This didn't occurred when -v option was used.
The cause was "h5tool_format_t info;" struct variable members were accessed
without proper values were assigned (was NULL), so printf failed later in the code.
Tested:
jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), cmake-Windows (32-LE)
|
|
|
|
| |
standard 2.8.6
|
|
|
|
|
|
| |
OPTION command for solution folder and no packaging.
Tested: local linux
|
|
|
|
|
|
| |
needs some polish - the solution folder assignment should go closer to the target declaration and not all projects are grouped (parallel, c++, fortran, hl, and a few others).
Tested on Windows.
|
|
|
|
|
|
| |
Ran bin/reconfigure to update the Makefile.in in directories not part of the fortran directory check=in. Updates Makefile.in due to changes made in configure.in for the Fortran 2003 additions.
Tested on all platforms run under daily tests.
|
|
|
|
|
|
|
|
|
|
|
| |
Purpose:
Work for HDFFV-7602 - HDF5 command tools: Provide framework for reusable
test files among tools
Description:
Provide framework to share test files among tools for tools test.
Tested:
jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE)
|
|
|
|
|
|
| |
status of check
Tested: heiwa
|
|
|
|
|
|
| |
inside the test macro. Allows individual tests to be independently executed.
Tested: local linux
|
|
|
|
| |
Tested: Debug windows
|
|
|
|
|
|
|
|
|
|
|
| |
HDFFV-7607: h5ls - improve efficiency of test scripts - removing top 3 extra lines from expected output files
Description:
This is a subtask from 'HDFFV-7514 - gmqs: h5dump - improve effectiveness of testing scripts for handling expected output files'.
This is prerequisite for 'HDFFV-7602 tools - upgrade tools' test scripts to share test files among tools, providing framework for test file re-usability.'
Tested:
jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE), Cmake (jam)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Test scripts sometimes need to filter some system-specific messages from the
actual output so that it can match the correct expected output. These filtering
functions, ususally called "STDOUT_FILTER()" and "STDERR_FILTER()" were being
repeated in individual test scripts. This becomes a maintenance problem and
is error prone.
Solution:
Extract the two filter functions code to bin/output_filter.sh and then each
test script sources it in. This allows reuse of coding and is much easier to
maintain and to add new filtering.
Tested:
LLNL Zeus (linux64 cluster) and Dawndev (Blue-Gene cluster), both for serial
mode only.
--This line, and those below, will be ignored--
M tools/misc/testh5mkgrp.sh
M tools/h5dump/testh5dump.sh.in
M tools/h5diff/testh5diff.sh
M tools/h5copy/testh5copy.sh
M tools/h5ls/testh5ls.sh.in
M MANIFEST
A bin/output_filter.sh
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
General shared library improvements for CYGWIN / AIX
Description:
Shared libraries are disabled on both CYGWIN and AIX due
to inability to build them correctly. Part of the problem
in both of these situations is the lack of the libtool
flag -no-undefined, which tells libtool that all needed
symbols are defined at link time (a requirement on these
systems) and that it's okay to build shared libraries.
Another problem are lack of dependencies between wrapper
libraries and core C HDF5 library.
This patch addresses both of these by fixing configure to
add in -no-undefined flag for libtool during linking and
adds automake dependencies in the Makefile.am files.
After testing, both CYGWIN and AIX now generate shared
libraries, but there are still some test failures in each.
(cache_api, dt_arith, and testerror.sh on CYGWIN, and
fortran tests on AIX).
Even though the shared libraries are not quite perfect,
this is a general improvement to what we had before, so
I'm applying the patch anyways. Note that default behavior
of shared libraries on these systems being disabled has
NOT been changed and requires the use of the
--enable-unsupported to attempt to build them.
We will need to address the test failures in each
architecture prior to formally supporting shared
libraries on each.
Tested:
h5committested & CYGWIN tested (on bangan)
(AIX tested by Albert on bp-login2)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Add "silent make" mode configure option.
Description:
Automake 1.11 has a new option available that allows for a
silent make mode. This functionality needs to be explicitly
enabled in configure.in via the use of the automake macro
AM_SILENT_RULES, which is what this commit is adding.
This introduces a new configure option:
--{en|dis}able-silent-rules
This option is on by default, and simplies compile and link
line outputs when building the library. Disabling this option
will print full "verbose" output (i.e., full compile and
linking lines for each target).
Tested:
This was tested on jam & h5committested
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
- Revise shared Fortran library disabling scenarios in configure
- Improve configure output summary
Description:
Shared Fortran libraries are not supported on Mac, but were being
disabled by configure in a way that also forced the C libraries
to be static-only. This has been fixed, so now only shared Fortran
is disabled while shared C can remain.
This prompted two additional changes:
1. While working on the check that addresses whether or not
shared Fortran libraries are allowed, removed old and no
longer needed check(s) that disable shared Fortran
libraries with HP, Intel 8, PGI, and Absoft compilers.
(Essentially, Mac is the only situation in which Fortran
shared are disabled by configure.)
2. Having two different states of libraries (i.e. shared C
library with static-only Fortran library) was not apparent
in the configure summary, which labeled all libraries as
either shared and/or static. I've added lines to both the
C++ and Fortran output sections to list shared/static-ness
of these libraries specifically.
Additionally, I've made sure that the new --enable-unsupported
configure option correctly overrides configure if it tries to
disable a shared library.
Tested:
jam, fred, & h5committest
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug 2182 - h5ls and h5dump: update to use --enable-error-stack among tools, also update related descriptions
Description:
Decided to use --enable-error-stack long option name only to
display error stack messages from HDF5 lib among tools.
Updated to unify option name to '--enable-error-stack' for printing
HDF5 error stack messages for HDF5 tools. h5ls and h5dump for now.
For h5ls, this replaces "-e/--errors" option, which is deprecated.
For h5dump, remove -E from help page and RM , which was added by mistake
before release1.8.7.
Help page and RM got updated.
Updated test case.
Tested:
jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Improve the previous fix for Bug 2216 - GMQS: h5diff - memory leak when
compares vlen string in dataset or attributes
Description:
Related to the previous checkin r20270 and r20266.
Improve h5tools_detect_vlen() code for better performance. H5Tdetect_class
already recusive on given type so don't need to be part of recusive call
again. Also improve error handlings in h5tools_detect_vlen and
h5tools_detect_vlen_str functions.
Also updated h5ls and h5dump code accordingly.
Tested:
jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Cmake - jam
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Improve the previous fix for Bug 2216 - GMQS: h5diff - memory leak when
compares vlen string in dataset or attributes
Description:
Improve the fix along with the previous checkin r20266.
Add a new function to tool lib, h5tools_detect_vlen_data() which return
TRUE if include any kind of vlen data all at once, either VLEN-data or
VLEN-string and so on.
Also updated h5ls and h5dump code accordingly.
Tested:
jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Cmake - jam
|
| |
|
|
|
|
| |
Add SKIPPED to test name if test skipped, also do not run skipped tests if doing memcheck
|
|
|
|
|
|
|
|
| |
h5tools_detect_vlen_str to match other functions in tools lib.
Added back test for H5Tdetect_class of H5T_VLEN after each instance of above function to catch all VLEN types in h5dump.
Tested: local linux
|
|
|
|
|
|
|
|
|
|
| |
Fixed Bug 1904 - h5ls : usage of '-a' option is not clear to display expected output
Description:
Fixed incorrect content and improved help page for -a option of h5ls.
Tested:
jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), Cmake (jam)
|