| Commit message (Collapse) | Author | Age | Files | Lines |
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Cleaned compiler warnings
Bug fixes:
1)change the options block size variable from int to hsize_t, to match the H5Pset_userblock call
2) do not print print compression ratio when the requested filter is NONE
3) print references object names
Tested: windows, linux
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1) Add a userblock to an HDF5 file during the repack. The user gives
give a filename and userblock size as command line parameters to
h5repack and the contents of that file are stored in the
userblock for the HDF5 file created by h5repack.
2) add a copy of userblock from HDF5 file
New flags to handle this -u and -b
tested: windows, linux
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tested: linux
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tested: windows, linux, solaris
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1) have several global filters
2) do a check on the verify code about private filter values
Note: some shuffle and szip private symbols were made public
tested: windows, linux, solaris
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Minor tunings to output verbose messages: when there is not a filter request do not print a message saying the filter was not apllied when the dataset was too small
Tested:linux
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more code cleaning
tested linux
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Code cleaning
Move inclusion of .h files to .c
Tested linux, aix, solaris
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h5repack revision and 1.6 implementation of 1.7 bugs fixed in the last few months.
#676. h5repack, h5diff: cannot handle big datasets
#228 h5repack should not use H5Tget_native_type
#584 H5repack ouput the percent of compression
#674 : h5repack, adding error messages like h5dump does
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Tested platform: Kagiso (serial, pp)
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Code cleanup
Description:
Trim trailing whitespace, which is making 'diff'ing the two branches
difficult.
Solution:
Ran this script in each directory:
foreach f (*.[ch] *.cpp)
sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f
end
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
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Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-)
Description:
Generally speaking, this is the "signed->unsigned" change to selections.
However, in the process of merging code back, things got stickier and stickier
until I ended up doing a big "sync the two branches up" operation. So... I
brought back all the "infrastructure" fixes from the development branch to the
release branch (which I think were actually making some improvement in
performance) as well as fixed several bugs which had been fixed in one branch,
but not the other.
I've also tagged the repository before making this checkin with the label
"before_signed_unsigned_changes".
Platforms tested:
FreeBSD 4.10 (sleipnir) w/parallel & fphdf5
FreeBSD 4.10 (sleipnir) w/threadsafe
FreeBSD 4.10 (sleipnir) w/backward compatibility
Solaris 2.7 (arabica) w/"purify options"
Solaris 2.8 (sol) w/FORTRAN & C++
AIX 5.x (copper) w/parallel & FORTRAN
IRIX64 6.5 (modi4) w/FORTRAN
Linux 2.4 (heping) w/FORTRAN & C++
Misc. update:
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new feature
Description:
added a check that the chunk size must be smaller than pixels per block in SZIP request
prints a message and exits, if not met
Solution:
Platforms tested:
linux
solaris
aix
Misc. update:
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bug fix
Description:
the option CHUNK:NONE (remove chunking ) was not setting the layout to contiguous
Solution:
Platforms tested:
linux
solaris
AIX
Misc. update:
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h5diff and h5repack changes
Description:
h5diff
introduced the following four modes of output:
Normal mode: print the number of differences found and where they occured
Report mode: print the above plus the differences
Verbose mode: print the above plus a list of objects and warnings
Quiet mode: do not print output (h5diff always returns an exit code of 1 when differences are found)
h5repack
added an extra parameter for SZIP filter (coding method)
the new syntax is
-f SZIP=<pixels per block,coding>
(pixels per block is a even number in 2-32 and coding method is 'EC' or 'NN')
Example of use:
./h5repack -i file1 -o file2 -f SZIP=8,NN -v
updated usage messages, test scripts and files accordingly
Solution:
Platforms tested:
linux
solaris
AIX
Misc. update:
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bug fix, new feature
Description:
fixed bug in the parse function:
cases where we have an already inserted name but there is a new name also
example:
-f dset1:GZIP=1 -l dset1,dset2:CHUNK=20x20
dset1 is already inserted, but dset2 must also be (it was not)
added a CHECK_SZIP symbol to enable/disable checking of library related szip parameters
added the print of the filter name in verbose mode (confirms visually that the filter was applied )
Solution:
Platforms tested:
linux
aix
solaris
Misc. update:
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updated some comments
Description:
Solution:
Platforms tested:
linux
Misc. update:
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h5repack changes
Description:
there were some requests to change some minor h5repack features
h5repack only made a warning about a non available filter in verbose mode ( -v )
without -v it kept silent, and users sometimes missed this warning
the request was that it should print this warning always. so, the new format, is e.g
./h5repack -i test_szip.h5 -o out.h5
Warning: dataset </dset_szip> cannot be read, SZIP filter is not available
due to this, and to avoid a lot of these messages in the shell test script, I modified
the script h5repack.sh so that it detects the presence of all filters in the environment
(previously it only detected SZIP)
the test files were also divided in more files , to make the script code easier to
follow
Solution:
Platforms tested:
linux
AIX (without SZIP)
solaris (without gzip and SZIP)
Misc. update:
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